Rorug05G0243600

YABBY protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009025
Physical Location & Seq
Reverse (-)
26146633 .. 26147550
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0243600.1

Sequence Viewer

Length: 918 bp
ATGGGAGATAGACCATCTTACTCTTGGCGAAGTATCATGGAGGCTCGACCAATAATCAAAGCTGGCCTTCTGTGGAGAATTGGGAATGGTACCTCTGTGAAAATTTCGGAGGATGAGTGGATTCCAAATGTTGCTTCCCATTCCTTAGTTAAACCGGCTGACACTATTTTTGAGATAGTCTCGGATTTGATTGATACAAGTACATGGACGTGGGATAGTGTCGCTGTTCATGCATGTTTTGATGAGGATGTAGCTATGAATGTTCTTTCTATTCCATTAAGCAGAAGGTTTGGTTTGGATAGGGTTGCTTGGAAGTTTGATAAGAAAGGTTTTTTCTCAGTTAAATCTGCATATACTGTGGCTCGAGATTTCTCCATTGGCAACCTTTTTGCTTCAACTTCTATGGGGGACCCTTATGCTCCATTATGGAAGGCCATGTGGAAGGCAAAAGTCCCTAACAAGGTGGCAATATTTGGATGGAGAGCAGCTCATAACCTCCTTCCAACTAGAACAGCTTTGACTGCTAAAGGCTACACGGGTGAGTTGCATTGTGTAGTCTGTTCTCAATTTGTGGAAACACTTGAACATTTGTTTTGTGATTGCACTATTGCTCGTGCGATGTTGAGTGCTCCTCCTTTCTCTATTCCTACATCTGCTCTGCCGTGGAAAGAATGGCTCCTGGAGAGGGCTAGTTCTTTGTCCTCTACTCTTTTTGATAAGCTATTAATTCTTCTATGGAGCATTTGGAGAAATAGAAATGATGTATTGTGGAGGAACCATTCCCAAACTAGTTCCGGCCTGGTGGCTTCCTCATTGGCTTGGTATGAGGAATATTTGCAGGCAAACATTTCTTCGGGTAGTTCTCAGCCTAGACAAAAGAATGCAAGAAATGGATACCGCCTGAGGGTGATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YABBY

Protein Analysis

305

Amino Acids

34.44

Weight (kDa)

9.19

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 124 - 206 6.9e-18 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AciI CCGC 1 cut(s) 898
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 2 cut(s) 91, 202
AfiI CCNNNNNNNGG 3 cut(s) 460, 685, 904
AgsI TTSAA 2 cut(s) 396, 584
AhlI ACTAGT 1 cut(s) 788
AjiI CACGTC 1 cut(s) 210
AjnI CCWGG 2 cut(s) 678, 798
AjuI GAANNNNNNNTTGG 2 cut(s) 118, 150
AluBI AGCT 5 cut(s) 62, 254, 488, 515, 721
AluI AGCT 5 cut(s) 62, 254, 488, 515, 721
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 3 cut(s) 64, 432, 796
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 102
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AseI ATTAAT 1 cut(s) 725
Asp718I GGTACC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 409
AxyI CCTNAGG 1 cut(s) 902
BaeI ACNNNNGTAYC 2 cut(s) 81, 114
BanI GGYRCC 1 cut(s) 89
BauI CACGAG 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 1 cut(s) 497
BccI CCATC 2 cut(s) 22, 471
BceAI ACGGC 1 cut(s) 646
BciT130I CCWGG 2 cut(s) 680, 800
BciVI GTATCC 1 cut(s) 887
BcoDI GTCTC 1 cut(s) 184
BcuI ACTAGT 1 cut(s) 788
BfaI CTAG 4 cut(s) 507, 690, 789, 870
BfuI GTATCC 1 cut(s) 887
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 680, 800
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 363
BmgBI CACGTC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 5 cut(s) 91, 410, 411, 677, 776
BmrFI CCNGG 2 cut(s) 680, 800
BplI GAGNNNNNCTC 6 cut(s) 164, 196, 472, 504, 616, 648
BpmI CTGGAG 1 cut(s) 701
BsaJI CCNNGG 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 460, 685, 904
Bse118I RCCGGY 1 cut(s) 154
Bse21I CCTNAGG 1 cut(s) 902
BseBI CCWGG 2 cut(s) 680, 800
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 3 cut(s) 118, 253, 482
BseLI CCNNNNNNNGG 3 cut(s) 460, 685, 904
BseMII CTCAG 3 cut(s) 351, 878, 893
BseRI GAGGAG 1 cut(s) 621
BseXI GCAGC 1 cut(s) 497
BshFI GGCC 3 cut(s) 66, 434, 798
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 2 cut(s) 155, 795
BslFI GGGAC 2 cut(s) 422, 437
BslI CCNNNNNNNGG 3 cut(s) 460, 685, 904
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 2 cut(s) 422, 437
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 3 cut(s) 66, 434, 798
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 631
BspACI CCGC 1 cut(s) 898
BspANI GGCC 3 cut(s) 66, 434, 798
BspCNI CTCAG 3 cut(s) 350, 877, 894
BspLI GGNNCC 5 cut(s) 91, 410, 411, 677, 776
BspT107I GGYRCC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 662
BssSI CACGAG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 2 cut(s) 680, 800
Bst4CI ACNGT 1 cut(s) 358
BstC8I GCNNGC 2 cut(s) 64, 840
BstDEI CTNAG 4 cut(s) 145, 337, 864, 902
BstDSI CCRYGG 1 cut(s) 662
BstF5I GGATG 3 cut(s) 118, 253, 482
BstMAI GTCTC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 230, 521
BstNI CCWGG 2 cut(s) 680, 800
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 678, 798
BstV1I GCAGC 1 cut(s) 497
Bsu36I CCTNAGG 1 cut(s) 902
BsuI GTATCC 1 cut(s) 887
BsuRI GGCC 3 cut(s) 66, 434, 798
BtgI CCRYGG 1 cut(s) 662
BtgZI GCGATG 1 cut(s) 632
BtrI CACGTC 1 cut(s) 210
BtsCI GGATG 3 cut(s) 118, 253, 482
Cac8I GCNNGC 2 cut(s) 64, 840
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 90, 201
CviAII CATG 5 cut(s) 37, 204, 230, 234, 436
CviQI GTAC 2 cut(s) 90, 201
DdeI CTNAG 4 cut(s) 145, 337, 864, 902
Eco47I GGWCC 1 cut(s) 409
Eco81I CCTNAGG 1 cut(s) 902
Eco88I CYCGRG 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 678, 798
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 5 cut(s) 40, 207, 233, 237, 439
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 2 cut(s) 422, 437
FatI CATG 5 cut(s) 36, 203, 229, 233, 435
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 3 cut(s) 125, 260, 489
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 4 cut(s) 507, 690, 789, 870
GluI GCNGC 1 cut(s) 486
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 3 cut(s) 66, 434, 798
HapII CCGG 2 cut(s) 155, 795
Hin1II CATG 5 cut(s) 40, 207, 233, 237, 439
HinfI GANTC 1 cut(s) 121
HpaII CCGG 2 cut(s) 155, 795
HphI GGTGA 1 cut(s) 551
Hpy188I TCNGA 2 cut(s) 109, 184
Hpy188III TCNNGA 1 cut(s) 365
HpyAV CCTTC 5 cut(s) 77, 279, 424, 436, 509
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 6 cut(s) 233, 350, 547, 603, 838, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 521
HpyF3I CTNAG 4 cut(s) 145, 337, 864, 902
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 5 cut(s) 40, 207, 233, 237, 439
KflI GGGWCCC 1 cut(s) 409
KpnI GGTACC 1 cut(s) 93
LmnI GCTCC 4 cut(s) 424, 634, 681, 738
LpnPI CCDG 9 cut(s) 48, 168, 665, 692, 785, 808, 812, 824, 914
Lsp1109I GCAGC 1 cut(s) 497
MaeI CTAG 4 cut(s) 507, 690, 789, 870
MaeII ACGT 1 cut(s) 209
MboII GAAGA 2 cut(s) 722, 843
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 4 cut(s) 78, 102, 566, 726
MmeI TCCRAC 1 cut(s) 527
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 4 cut(s) 150, 278, 342, 725
MslI CAYNNNNRTG 1 cut(s) 208
MspI CCGG 2 cut(s) 155, 795
MspR9I CCNGG 2 cut(s) 680, 800
Mva1269I GAATGC 1 cut(s) 886
MvaI CCWGG 2 cut(s) 680, 800
MwoI GCNNNNNNNGC 2 cut(s) 230, 521
NlaIII CATG 5 cut(s) 40, 207, 233, 237, 439
NlaIV GGNNCC 5 cut(s) 91, 410, 411, 677, 776
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 363
PctI GAATGC 1 cut(s) 886
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 409
PshBI ATTAAT 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 678, 798
PspGI CCWGG 2 cut(s) 678, 798
PspN4I GGNNCC 5 cut(s) 91, 410, 411, 677, 776
PspPI GGNCC 1 cut(s) 409
PspPPI RGGWCCY 1 cut(s) 409
RsaI GTAC 2 cut(s) 91, 202
RsaNI GTAC 2 cut(s) 90, 201
RseI CAYNNNNRTG 1 cut(s) 208
SaqAI TTAA 4 cut(s) 150, 278, 342, 725
SatI GCNGC 1 cut(s) 486
Sau96I GGNCC 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 680, 800
SduI GDGCHC 1 cut(s) 631
Sfr274I CTCGAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 363
SmiMI CAYNNNNRTG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SpeI ACTAGT 1 cut(s) 788
Sse9I AATT 4 cut(s) 78, 102, 566, 726
SsiI CCGC 1 cut(s) 898
SspI AATATT 2 cut(s) 471, 833
SspMI CTAG 4 cut(s) 507, 690, 789, 870
StyD4I CCNGG 2 cut(s) 678, 798
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 212
TaqI TCGA 2 cut(s) 46, 364
TasI AATT 4 cut(s) 78, 102, 566, 726
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 4 cut(s) 150, 278, 342, 725
Tru9I TTAA 4 cut(s) 150, 278, 342, 725
TseI GCWGC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 218, 272
VpaK11BI GGWCC 1 cut(s) 409
VspI ATTAAT 1 cut(s) 725
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XhoI CTCGAG 1 cut(s) 363
XspI CTAG 4 cut(s) 507, 690, 789, 870
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.