Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Reverse (-)

12351745 .. 12358088

Gene Structure 6344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G147600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCGATGGATTTGATGGCATCCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAACAGCTTACAGAACATGGTGACGGTGAGATGTGGGCATTGTGCCAATCTACTGTCAGTTAATATGGGAGCTTCCCTTCAGTCGAATGCTTTTCCTTCTCAAGATCCCCAGCTACAGAAGCATCACCTGAGCTCTGAGGATTCAAATAAGAGCTGCGGATCTTCATCATCTTCCAAATGCAGCAAGTTTAGTCATCCCTTTGAGTCTGTAGAGCTTCATGACCAACCAAGCATCTCTCCCATCCGCCCACCCGAGAAGAGACAGCGGGTTCCTTCAGCATATAACAGGTTTATCAAGGAAGAAATTCAAAGGATTAAAGCTAGTAATCCTGACATTAGCCATAGGGAAGCTTTTAGCACTGCAGCAAAAAATTGGGCACATTTTCCTCACATTCACTTTGGTTTAAAGCTGGATGGCAGCAAGCAACCGAAGCTGGATCAGACTTTTGCAGGAGGAGATCAGGGAACTCAAAAGTCTAGCGGATTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0045165 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

193

Amino Acids

21.27

Weight (kDa)

8.64

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	71, 243, 331, 352, 567
AclWI	GGATC	3 cut(s)	185, 253, 531
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	2 cut(s)	149, 345
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	231, 395
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	3 cut(s)	185, 253, 531
Ama87I	CYCGRG	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	240, 267, 449, 504
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	390
AsuHPI	GGTGA	4 cut(s)	85, 118, 124, 203
AvaI	CYCGRG	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	4 cut(s)	227, 279, 461, 516
BccI	CCATC	3 cut(s)	10, 335, 494
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	2 cut(s)	408, 564
BfmI	CTRYAG	3 cut(s)	200, 294, 447
BisI	GCNGC	4 cut(s)	241, 268, 450, 505
BlsI	GCNGC	4 cut(s)	242, 269, 451, 506
BmeT110I	CYCGRG	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	357
BmsI	GCATC	3 cut(s)	29, 217, 327
Bpu10I	CCTNAGC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	250
BseGI	GGATG	4 cut(s)	20, 280, 327, 505
BseJI	GATNNNNATC	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	206, 213
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	227, 279, 461, 516
BseYI	CCCAGC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	221, 466
Bsp143I	GATC	4 cut(s)	190, 245, 523, 544
BspACI	CCGC	5 cut(s)	71, 243, 331, 352, 567
BspCNI	CTCAG	2 cut(s)	207, 214
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	3 cut(s)	185, 253, 531
BssMI	GATC	4 cut(s)	190, 245, 523, 544
Bst4CI	ACNGT	2 cut(s)	112, 141
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	2 cut(s)	215, 222
BstF5I	GGATG	4 cut(s)	20, 280, 327, 505
BstKTI	GATC	4 cut(s)	193, 248, 526, 547
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	4 cut(s)	190, 245, 523, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 205, 517
BstSFI	CTRYAG	3 cut(s)	200, 294, 447
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	4 cut(s)	227, 279, 461, 516
BstX2I	RGATCY	2 cut(s)	190, 245
BstYI	RGATCY	2 cut(s)	190, 245
BtsCI	GGATG	4 cut(s)	20, 280, 327, 505
BtsI	GCAGTG	2 cut(s)	43, 444
BtsIMutI	CAGTG	2 cut(s)	43, 444
Cac8I	GCNNGC	1 cut(s)	509
CciI	TCATGA	1 cut(s)	304
CviAII	CATG	3 cut(s)	84, 103, 305
DdeI	CTNAG	2 cut(s)	215, 222
DpnI	GATC	4 cut(s)	192, 247, 525, 546
DpnII	GATC	4 cut(s)	190, 245, 523, 544
DraI	TTTAAA	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	149, 345
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	3 cut(s)	87, 106, 308
FaiI	YATR	8 cut(s)	39, 85, 104, 152, 306, 367, 369, 429
FatI	CATG	3 cut(s)	83, 102, 304
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	241, 268, 450, 505
FokI	GGATG	4 cut(s)	7, 267, 314, 512
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	4 cut(s)	241, 268, 450, 505
FspBI	CTAG	2 cut(s)	408, 564
GluI	GCNGC	4 cut(s)	241, 268, 450, 505
GsaI	CCCAGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	87, 106, 308
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	3 cut(s)	227, 290, 570
HphI	GGTGA	4 cut(s)	85, 118, 124, 203
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	25, 223, 528
Hpy188III	TCNNGA	3 cut(s)	188, 305, 416
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	173, 192, 369
HpyCH4III	ACNGT	2 cut(s)	112, 141
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	6 cut(s)	48, 57, 87, 267, 449, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 205, 517
HpyF3I	CTNAG	2 cut(s)	215, 222
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	87, 106, 308
Kzo9I	GATC	4 cut(s)	190, 245, 523, 544
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	8 cut(s)	209, 227, 358, 429, 482, 506, 522, 533
Lsp1109I	GCAGC	4 cut(s)	227, 279, 461, 516
LweI	GCATC	3 cut(s)	29, 217, 327
MaeI	CTAG	2 cut(s)	408, 564
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	192, 247, 525, 546
MboI	GATC	4 cut(s)	190, 245, 523, 544
MboII	GAAGA	4 cut(s)	240, 249, 355, 398
MflI	RGATCY	2 cut(s)	190, 245
MhlI	GDGCHC	2 cut(s)	221, 466
MluCI	AATT	2 cut(s)	390, 457
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	3 cut(s)	217, 483, 533
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	3 cut(s)	147, 402, 491
MspA1I	CMGCKG	1 cut(s)	352
Mva1269I	GAATGC	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	54, 205, 517
NdeII	GATC	4 cut(s)	190, 245, 523, 544
NlaIII	CATG	3 cut(s)	87, 106, 308
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	106
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	227, 570
PkrI	GCNGC	4 cut(s)	242, 269, 451, 506
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	190, 245
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	147, 402, 491
SatI	GCNGC	4 cut(s)	241, 268, 450, 505
Sau3AI	GATC	4 cut(s)	190, 245, 523, 544
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	2 cut(s)	221, 466
SfaNI	GCATC	3 cut(s)	29, 217, 327
SfcI	CTRYAG	3 cut(s)	200, 294, 447
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	390, 457
SsiI	CCGC	5 cut(s)	71, 243, 331, 352, 567
SspMI	CTAG	2 cut(s)	408, 564
SstI	GAGCTC	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	112, 141
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	5, 170
TasI	AATT	2 cut(s)	390, 457
TfiI	GAWTC	2 cut(s)	227, 570
Tru1I	TTAA	3 cut(s)	147, 402, 491
Tru9I	TTAA	3 cut(s)	147, 402, 491
TscAI	CASTG	2 cut(s)	50, 451
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	4 cut(s)	240, 267, 449, 504
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	240, 293
TspRI	CASTG	2 cut(s)	50, 451
XapI	RAATTY	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	408, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.