Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Reverse (-)

19076925 .. 19084048

Gene Structure 7124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1159800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCAATGGATTTGATGGCATCCGAACGCGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAATAGTTCAATGAATATGGTGACGGTGAGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATATTGGAGGTTCCCTTCAGTCGACCACCATTCCTCCTCATCAAGATCCCCAGAAACAACACCTGAGCTCTGAGGATTCAAATAAGAACTGCGGCTCATCATCATCATCATCATCATCATCATCATCATCATCCAAATCCAACAAGTTTGGTCATGCATTTGAGTCTCTAGAGCTTCATGACCAACCTAGAATCTCTCCCATACGCCCACCAGAGAAAAGACAGCGGGTTCCTTCAGCATATAACAGGTTTATCAAGGAGGAGATCCAAAGGATTAAGGCTAGTAATCCTGACATTAGCCATAGGGAAGCTTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCCCACATTCACTTTGGATTAAAGCTGGATGCCAACAGGGAACCAAAGCTAGACCAGGCTTTTGCAGGAGAGGGAACTCAAAAGTCTAATGGCTTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0045165 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

198

Amino Acids

21.75

Weight (kDa)

8.71

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	7 - 64	4.1e-30	YABBY, N-terminal
YABBY	PF04690	116 - 170	5.4e-37	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	1 cut(s)	30
AciI	CCGC	3 cut(s)	71, 240, 373
AclWI	GGATC	2 cut(s)	188, 406
AcuI	CTGAAG	2 cut(s)	149, 366
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	96, 228
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	6 cut(s)	216, 322, 458, 473, 517, 541
AluI	AGCT	6 cut(s)	216, 322, 458, 473, 517, 541
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	188, 406
ApeKI	GCWGC	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AsuHPI	GGTGA	3 cut(s)	85, 118, 124
BaeGI	GKGCMC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	4 cut(s)	317, 336, 429, 542
BisI	GCNGC	2 cut(s)	241, 471
BlsI	GCNGC	2 cut(s)	242, 472
Bme1390I	CCNGG	1 cut(s)	548
BmiI	GGNNCC	3 cut(s)	160, 378, 534
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	2 cut(s)	29, 511
Bpu10I	CCTNAGC	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
BseBI	CCWGG	1 cut(s)	548
BseGI	GGATG	3 cut(s)	20, 278, 526
BseMII	CTCAG	2 cut(s)	203, 210
BseRI	GAGGAG	2 cut(s)	174, 422
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	218, 487
Bsp143I	GATC	2 cut(s)	193, 411
BspACI	CCGC	3 cut(s)	71, 240, 373
BspCNI	CTCAG	2 cut(s)	204, 211
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	160, 378, 534
BspPI	GGATC	2 cut(s)	188, 406
BssMI	GATC	2 cut(s)	193, 411
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	212, 219
BstF5I	GGATG	3 cut(s)	20, 278, 526
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	2 cut(s)	196, 414
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	2 cut(s)	193, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	482
BstX2I	RGATCY	2 cut(s)	193, 411
BstYI	RGATCY	2 cut(s)	193, 411
BtsCI	GGATG	3 cut(s)	20, 278, 526
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
CciI	TCATGA	1 cut(s)	325
CviAII	CATG	3 cut(s)	84, 302, 326
DdeI	CTNAG	2 cut(s)	212, 219
DpnI	GATC	2 cut(s)	195, 413
DpnII	GATC	2 cut(s)	193, 411
Ecl136II	GAGCTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	149, 366
EcoICRI	GAGCTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	218
FaeI	CATG	3 cut(s)	87, 305, 329
FaiI	YATR	9 cut(s)	39, 85, 104, 303, 327, 350, 388, 390, 450
FatI	CATG	3 cut(s)	83, 301, 325
FauI	CCCGC	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	241, 471
FokI	GGATG	3 cut(s)	7, 265, 533
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	241, 471
FspBI	CTAG	4 cut(s)	317, 336, 429, 542
GluI	GCNGC	2 cut(s)	241, 471
Hin1II	CATG	3 cut(s)	87, 305, 329
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	3 cut(s)	224, 311, 339
HphI	GGTGA	3 cut(s)	85, 118, 124
Hpy166II	GTNNAC	2 cut(s)	43, 171
Hpy188I	TCNGA	2 cut(s)	25, 220
Hpy188III	TCNNGA	4 cut(s)	191, 317, 326, 437
Hpy8I	GTNNAC	2 cut(s)	43, 171
HpyAV	CCTTC	2 cut(s)	173, 390
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	5 cut(s)	48, 57, 87, 305, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	212, 219
Hsp92II	CATG	3 cut(s)	87, 305, 329
Kzo9I	GATC	2 cut(s)	193, 411
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	2 cut(s)	29, 511
MaeI	CTAG	4 cut(s)	317, 336, 429, 542
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	195, 413
MboI	GATC	2 cut(s)	193, 411
MflI	RGATCY	2 cut(s)	193, 411
MhlI	GDGCHC	2 cut(s)	218, 487
MluCI	AATT	1 cut(s)	478
MluI	ACGCGT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	149, 192, 195, 214, 400, 556
Mph1103I	ATGCAT	1 cut(s)	307
MseI	TTAA	3 cut(s)	147, 423, 512
MspA1I	CMGCKG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	2 cut(s)	193, 411
NlaIII	CATG	3 cut(s)	87, 305, 329
NlaIV	GGNNCC	3 cut(s)	160, 378, 534
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	307
PagI	TCATGA	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	224, 339
PkrI	GCNGC	2 cut(s)	242, 472
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	3 cut(s)	160, 378, 534
PsuI	RGATCY	2 cut(s)	193, 411
SacI	GAGCTC	1 cut(s)	218
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	147, 423, 512
SatI	GCNGC	2 cut(s)	241, 471
Sau3AI	GATC	2 cut(s)	193, 411
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	2 cut(s)	218, 487
SfaNI	GCATC	2 cut(s)	29, 511
Sse9I	AATT	1 cut(s)	478
SsiI	CCGC	3 cut(s)	71, 240, 373
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	4 cut(s)	317, 336, 429, 542
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	170
TasI	AATT	1 cut(s)	478
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	224, 339
Tru1I	TTAA	3 cut(s)	147, 423, 512
Tru9I	TTAA	3 cut(s)	147, 423, 512
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	113, 314
TspRI	CASTG	1 cut(s)	50
XbaI	TCTAGA	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	4 cut(s)	317, 336, 429, 542
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.