Rh5DG344800

YABBY protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009025
Physical Location & Seq
Reverse (-)
47201867 .. 47208318
6452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG344800.1

Sequence Viewer

Length: 522 bp
ATGTCAATGGAATTGATGGCATCCTCCGAACGTGTTTGTTATGTTCATTGCAACCTCTGCAACACCATTTTAGCGGTGAGTGTTCCAGCATTCAACGGCCCATTGACGGCGGCAACGACGACAGTGGTGACGGTGAGATGTGGTCACTGCGCAAATCTGCTGTCTGTTAACATCGGAGCAGCTTCGCTCCAATACCACTCAACTAGTCCCAGTCCTACCACTACTGCTGCTGCTACTCCTCACCCTCATCCCCATACTCAGCATTATCATTCTCACCCTAACATTTTCGCGCACCAGAAGCAACATCAGGTGAGCTCTGAGGACTCCTCATCAAATAAGGACTACGGATCTTCATCATCATCGTCTACTTCTTCCAAATGCAACAAGTTTGCTGCTGCTCCTGCATTTGATCAGTCCTCTACTACTGTAGACCAACCAAGAGTCTCTCCCATTCGCCGTCGGTCCCTCTCTCTCTCTCTCTCTCTCTCTCCAAAACACACACACATGCACAAACATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YABBY

Protein Analysis

173

Amino Acids

18.53

Weight (kDa)

9.02

Isoelectric Point (pI)

72.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YABBY_N PF24868 8 - 64 3.9e-23 YABBY, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 151
AccI GTMKAC 2 cut(s) 365, 429
AccII CGCG 1 cut(s) 290
AciI CCGC 2 cut(s) 74, 110
AclWI GGATC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 1 cut(s) 94
AhlI ACTAGT 1 cut(s) 203
AluBI AGCT 2 cut(s) 182, 315
AluI AGCT 2 cut(s) 182, 315
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 1 cut(s) 355
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 5 cut(s) 179, 227, 230, 392, 395
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 2 cut(s) 152, 292
AspS9I GGNCC 2 cut(s) 98, 462
AsuHPI GGTGA 6 cut(s) 88, 139, 145, 233, 266, 322
AvaII GGWCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 5 cut(s) 191, 214, 217, 379, 382
BccI CCATC 1 cut(s) 10
BceAI ACGGC 3 cut(s) 112, 123, 441
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 448
BcuI ACTAGT 1 cut(s) 203
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 6 cut(s) 111, 180, 228, 231, 393, 396
BlsI GCNGC 6 cut(s) 112, 181, 229, 232, 394, 397
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 98, 462
BmiI GGNNCC 1 cut(s) 464
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BsaBI GATNNNNATC 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 352
BseGI GGATG 2 cut(s) 20, 247
BseJI GATNNNNATC 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 272, 309
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 228, 316
BseXI GCAGC 5 cut(s) 191, 214, 217, 379, 382
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 317
BslFI GGGAC 2 cut(s) 192, 448
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 2 cut(s) 192, 448
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 347, 409
BspACI CCGC 2 cut(s) 74, 110
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 2 cut(s) 271, 310
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 464
BspPI GGATC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 46
BsrI ACTGG 1 cut(s) 210
BssMI GATC 2 cut(s) 347, 409
Bst4CI ACNGT 3 cut(s) 124, 133, 427
BstAPI GCANNNNNTGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 258, 318
BstF5I GGATG 2 cut(s) 20, 247
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 2 cut(s) 152, 292
BstKTI GATC 2 cut(s) 350, 412
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 2 cut(s) 347, 409
BstMWI GCNNNNNNNGC 3 cut(s) 57, 298, 401
BstNSI RCATGY 2 cut(s) 508, 518
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 5 cut(s) 191, 214, 217, 379, 382
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 2 cut(s) 20, 247
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 129, 145
CfoI GCGC 2 cut(s) 152, 292
Cfr13I GGNCC 2 cut(s) 98, 462
CviAII CATG 2 cut(s) 505, 515
CviJI RGCY 3 cut(s) 99, 182, 315
CviKI_1 RGCY 3 cut(s) 99, 182, 315
DdeI CTNAG 2 cut(s) 258, 318
DpnI GATC 2 cut(s) 349, 411
DpnII GATC 2 cut(s) 347, 409
Ecl136II GAGCTC 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 2 cut(s) 508, 518
FaiI YATR 5 cut(s) 42, 255, 506, 516, 520
FaqI GGGAC 2 cut(s) 192, 448
FatI CATG 2 cut(s) 504, 514
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 2 cut(s) 365, 429
Fnu4HI GCNGC 6 cut(s) 111, 180, 228, 231, 393, 396
FokI GGATG 2 cut(s) 7, 234
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 6 cut(s) 111, 180, 228, 231, 393, 396
FspBI CTAG 1 cut(s) 204
FspI TGCGCA 1 cut(s) 151
GlaI GCGC 2 cut(s) 151, 291
GluI GCNGC 6 cut(s) 111, 180, 228, 231, 393, 396
HaeIII GGCC 1 cut(s) 99
HhaI GCGC 2 cut(s) 152, 292
Hin1II CATG 2 cut(s) 508, 518
Hin6I GCGC 2 cut(s) 150, 290
HinP1I GCGC 2 cut(s) 150, 290
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 323, 441
HpaI GTTAAC 1 cut(s) 169
HphI GGTGA 6 cut(s) 88, 139, 145, 233, 266, 322
Hpy166II GTNNAC 3 cut(s) 169, 366, 430
Hpy188I TCNGA 3 cut(s) 28, 176, 319
Hpy8I GTNNAC 3 cut(s) 169, 366, 430
Hpy99I CGWCG 2 cut(s) 121, 462
HpyCH4III ACNGT 3 cut(s) 124, 133, 427
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 6 cut(s) 51, 60, 381, 404, 508, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 298, 401
HpyF3I CTNAG 2 cut(s) 258, 318
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 2 cut(s) 508, 518
HspAI GCGC 2 cut(s) 150, 290
Ksp22I TGATCA 1 cut(s) 409
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 347, 409
LmnI GCTCC 3 cut(s) 176, 192, 403
LpnPI CCDG 5 cut(s) 99, 223, 293, 308, 414
Lsp1109I GCAGC 5 cut(s) 191, 214, 217, 379, 382
LweI GCATC 1 cut(s) 29
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 127, 143
MalI GATC 2 cut(s) 349, 411
MboI GATC 2 cut(s) 347, 409
MboII GAAGA 2 cut(s) 342, 363
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 1 cut(s) 11
MlyI GAGTC 2 cut(s) 317, 450
MnlI CCTC 8 cut(s) 34, 65, 249, 255, 313, 337, 427, 476
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 2 cut(s) 503, 513
Mva1269I GAATGC 1 cut(s) 89
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 57, 298, 401
NdeII GATC 2 cut(s) 347, 409
NlaIII CATG 2 cut(s) 508, 518
NlaIV GGNNCC 1 cut(s) 464
NmuCI GTSAC 2 cut(s) 127, 143
NsbI TGCGCA 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 2 cut(s) 508, 518
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 89
PkrI GCNGC 6 cut(s) 112, 181, 229, 232, 394, 397
PleI GAGTC 2 cut(s) 317, 449
PpsI GAGTC 2 cut(s) 317, 449
Psp124BI GAGCTC 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 2 cut(s) 98, 462
PsuI RGATCY 1 cut(s) 347
RseI CAYNNNNRTG 2 cut(s) 503, 513
SacI GAGCTC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 6 cut(s) 111, 180, 228, 231, 393, 396
Sau3AI GATC 2 cut(s) 347, 409
Sau96I GGNCC 2 cut(s) 98, 462
SchI GAGTC 2 cut(s) 317, 450
SduI GDGCHC 1 cut(s) 317
SetI ASST 5 cut(s) 34, 57, 184, 312, 317
SfaNI GCATC 1 cut(s) 29
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 2 cut(s) 503, 513
SpeI ACTAGT 1 cut(s) 203
Sse9I AATT 1 cut(s) 11
SsiI CCGC 2 cut(s) 74, 110
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 1 cut(s) 317
TaaI ACNGT 3 cut(s) 124, 133, 427
TaiI ACGT 1 cut(s) 34
TaqII GACCGA 1 cut(s) 450
TasI AATT 1 cut(s) 11
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 129, 152
TseFI GTSAC 2 cut(s) 127, 143
TseI GCWGC 5 cut(s) 179, 227, 230, 392, 395
Tsp45I GTSAC 2 cut(s) 127, 143
TspDTI ATGAA 2 cut(s) 35, 342
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 129, 152
VpaK11BI GGWCC 1 cut(s) 462
XceI RCATGY 2 cut(s) 508, 518
XmiI GTMKAC 2 cut(s) 365, 429
XspI CTAG 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.