Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Reverse (-)

10911740 .. 10913752

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCAGGTGAGTGTTCCATGCAATAGTTCAATGAATATGGTGACGGTGAGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATATTGGAGGTTCCCTTCAGTCGACTACAATTCCTCCTCATCAAGATCCCCAGAAACAACACCTGAGCTCTGAGGATTCAAATAAGAACTGCGGCTCATCATCATCATCATCCAAATCCAACAAGTTTGGTCATGCATTTGAGTCTCTAGAGCTTCATGACCAACCTAGAATCTCTCCCATAAACCCACCAGAGAAAAGACAGCGGGTTCCTTCAGCATATAACAGGTTTATCAAGGAGGAGATCCAAAGGATTAAGGCTAGTAATCCTGACATTAGCCATAGGGAAGCTTTTAGCACAGCAGCTAAAAATGTAAGTTATGGGTTTCTAACAAAGCAGCCATCATGTCTCTCAAAATTTTCATATATATGGGAGACCTTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0045165 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

156

Amino Acids

17.26

Weight (kDa)

9.04

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	104
AciI	CCGC	2 cut(s)	174, 286
AclWI	GGATC	2 cut(s)	122, 319
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	2 cut(s)	83, 279
AgsI	TTSAA	2 cut(s)	30, 162
AluBI	AGCT	4 cut(s)	150, 235, 371, 386
AluI	AGCT	4 cut(s)	150, 235, 371, 386
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	3 cut(s)	231, 434, 449
AlwI	GGATC	2 cut(s)	122, 319
ApeKI	GCWGC	2 cut(s)	383, 418
ApoI	RAATTY	1 cut(s)	437
AsuHPI	GGTGA	3 cut(s)	19, 52, 58
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	395, 430
BccI	CCATC	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	231, 434, 449
BfaI	CTAG	3 cut(s)	230, 249, 342
BisI	GCNGC	3 cut(s)	175, 384, 419
BlsI	GCNGC	3 cut(s)	176, 385, 420
BmiI	GGNNCC	2 cut(s)	94, 291
Bpu10I	CCTNAGC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	449
BsaXI	ACNNNNNCTCC	3 cut(s)	100, 130, 446
BseGI	GGATG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	137, 144
BseRI	GAGGAG	2 cut(s)	108, 335
BseXI	GCAGC	2 cut(s)	395, 430
BsiHKAI	GWGCWC	1 cut(s)	152
BsmAI	GTCTC	3 cut(s)	231, 434, 449
Bso31I	GGTCTC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	127, 324
BspACI	CCGC	2 cut(s)	174, 286
BspCNI	CTCAG	2 cut(s)	138, 145
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	94, 291
BspPI	GGATC	2 cut(s)	122, 319
BspTNI	GGTCTC	1 cut(s)	449
BssMI	GATC	2 cut(s)	127, 324
Bst4CI	ACNGT	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	146, 153
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	2 cut(s)	130, 327
BstMAI	GTCTC	3 cut(s)	231, 434, 449
BstMBI	GATC	2 cut(s)	127, 324
BstV1I	GCAGC	2 cut(s)	395, 430
BstX2I	RGATCY	2 cut(s)	127, 324
BstYI	RGATCY	2 cut(s)	127, 324
BtsCI	GGATG	1 cut(s)	191
CciI	TCATGA	1 cut(s)	238
CviAII	CATG	4 cut(s)	18, 215, 239, 426
CviJI	RGCY	8 cut(s)	150, 177, 235, 341, 360, 371, 386, 421
CviKI_1	RGCY	8 cut(s)	150, 177, 235, 341, 360, 371, 386, 421
DdeI	CTNAG	2 cut(s)	146, 153
DpnI	GATC	2 cut(s)	129, 326
DpnII	GATC	2 cut(s)	127, 324
Ecl136II	GAGCTC	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	2 cut(s)	83, 279
EcoICRI	GAGCTC	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	152
FaeI	CATG	4 cut(s)	21, 218, 242, 429
FatI	CATG	4 cut(s)	17, 214, 238, 425
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	175, 384, 419
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	175, 384, 419
FspBI	CTAG	3 cut(s)	230, 249, 342
GluI	GCNGC	3 cut(s)	175, 384, 419
Hin1II	CATG	4 cut(s)	21, 218, 242, 429
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	3 cut(s)	158, 224, 252
HphI	GGTGA	3 cut(s)	19, 52, 58
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	4 cut(s)	125, 230, 239, 350
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	107, 303
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	4, 21, 218
HpyF3I	CTNAG	2 cut(s)	146, 153
Hsp92II	CATG	4 cut(s)	21, 218, 242, 429
Kzo9I	GATC	2 cut(s)	127, 324
LpnPI	CCDG	5 cut(s)	146, 158, 285, 292, 363
Lsp1109I	GCAGC	2 cut(s)	395, 430
MaeI	CTAG	3 cut(s)	230, 249, 342
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	129, 326
MboI	GATC	2 cut(s)	127, 324
MflI	RGATCY	2 cut(s)	127, 324
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	111, 437
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	83, 126, 129, 148, 313
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	3 cut(s)	81, 336, 466
MslI	CAYNNNNRTG	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	286
NdeII	GATC	2 cut(s)	127, 324
NlaIII	CATG	4 cut(s)	21, 218, 242, 429
NlaIV	GGNNCC	2 cut(s)	94, 291
NmuCI	GTSAC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	220
PagI	TCATGA	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	158, 252
PkrI	GCNGC	3 cut(s)	176, 385, 420
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	94, 291
PsuI	RGATCY	2 cut(s)	127, 324
RseI	CAYNNNNRTG	1 cut(s)	448
SacI	GAGCTC	1 cut(s)	152
SalI	GTCGAC	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	81, 336, 466
SatI	GCNGC	3 cut(s)	175, 384, 419
Sau3AI	GATC	2 cut(s)	127, 324
SchI	GAGTC	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	448
Sse9I	AATT	2 cut(s)	111, 437
SsiI	CCGC	2 cut(s)	174, 286
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	3 cut(s)	230, 249, 342
SstI	GAGCTC	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	111, 437
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	158, 252
Tru1I	TTAA	3 cut(s)	81, 336, 466
Tru9I	TTAA	3 cut(s)	81, 336, 466
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	383, 418
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	3 cut(s)	47, 227, 432
XapI	RAATTY	1 cut(s)	437
XbaI	TCTAGA	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	104
XspI	CTAG	3 cut(s)	230, 249, 342
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.