RLG00000034593

YABBY protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009025
Physical Location & Seq
Reverse (-)
45574833 .. 45581669
6837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034593

Sequence Viewer

Length: 738 bp
ATGGAATTGGCCGGGCAAAGATTAATCTTTGTTGTGAGTGTTCCAGCATTCAACGGCCCATTGACGGCGGCAACGCCGACAGTGGTGACGGTGAGATGTGGTCACTGCGCAAATCTGCTGTCTGTTAACATCGGAGCAGCTTCGCTCCAATACCACTCATCTAGTCCCAGTCCTACCACTACTGCTGCTGCTGCTCCTCACCCTCATCCCCATACTCAGCATTATCATTCTCACCCTAACATTTTCGCGCACCAGAAGCAACATCTGGTGAGCTCTGAGGACTCCTCATCAAATAAGGACTACGGATCTTCATCATCATCGTCTACTTCTTCCAAATGCAACAAGTTTGCTGCTGCTCCTGCATTTGATCAGTCCTCTACTACTGTAGACCAACCAAGAGTCTCTCCCATTCGCCGGAGGAAATCCAAAGGATCAAAGCTGGTAATCCTGACATTAGCCATAGGGAAGCTTTTAGCACAGCAGCCAAAAATGATTCGTGGTGAGCCATGGGTACAAGTTGACGGAGACGGCGAGGGTGGTGGTGTCATGCGTGTGAAACCCGGGCGGAATAAGTTGCCGGCGACAGAAAGGGCGAGGTTGAAGTCGAGGCAAGGAGTGGTGGATTTGGATATGGGTAAGCAGGAAAGAGACAATGCTCTGTTAAGAGAGGGAAGAGAAAGAACAGAGGGCCAAAGCCAAAGATGGGCATATGAGAAAGAGTGGGCCCCGCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YABBY

Protein Analysis

246

Amino Acids

26.56

Weight (kDa)

9.83

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YABBY_N PF24868 9 - 50 6.3e-10 YABBY, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 109
AccI GTMKAC 2 cut(s) 323, 387
AccII CGCG 1 cut(s) 248
AciI CCGC 3 cut(s) 68, 565, 728
AclWI GGATC 2 cut(s) 313, 439
AcoI YGGCCR 1 cut(s) 9
AfaI GTAC 1 cut(s) 513
AfiI CCNNNNNNNGG 3 cut(s) 64, 414, 703
AgsI TTSAA 2 cut(s) 52, 601
AluBI AGCT 4 cut(s) 140, 273, 439, 469
AluI AGCT 4 cut(s) 140, 273, 439, 469
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 3 cut(s) 406, 519, 642
AlwI GGATC 2 cut(s) 313, 439
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 4 cut(s) 9, 55, 688, 723
ApaI GGGCCC 1 cut(s) 727
ApeKI GCWGC 7 cut(s) 137, 185, 188, 191, 350, 353, 481
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AseI ATTAAT 1 cut(s) 23
AspLEI GCGC 2 cut(s) 110, 250
AspS9I GGNCC 4 cut(s) 56, 688, 723, 724
AsuC2I CCSGG 3 cut(s) 13, 561, 562
AsuHPI GGTGA 6 cut(s) 97, 103, 191, 224, 280, 512
AvaI CYCGRG 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 727
BanII GRGCYC 2 cut(s) 275, 727
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 7 cut(s) 149, 172, 175, 178, 337, 340, 493
BccI CCATC 1 cut(s) 696
BceAI ACGGC 3 cut(s) 70, 81, 544
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 3 cut(s) 13, 561, 562
BcoDI GTCTC 3 cut(s) 406, 519, 642
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 384
BisI GCNGC 8 cut(s) 69, 138, 186, 189, 192, 351, 354, 482
BlsI GCNGC 8 cut(s) 70, 139, 187, 190, 193, 352, 355, 483
Bme1390I CCNGG 3 cut(s) 13, 561, 562
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 4 cut(s) 56, 688, 723, 724
BmiI GGNNCC 2 cut(s) 725, 726
BmrFI CCNGG 3 cut(s) 13, 561, 562
BmrI ACTGGG 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpuMI CCSGG 3 cut(s) 13, 561, 562
BsaBI GATNNNNATC 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 506, 560
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 414, 703
Bse118I RCCGGY 1 cut(s) 577
Bse1I ACTGG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 506, 560
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 310
BseLI CCNNNNNNNGG 3 cut(s) 64, 414, 703
BseMII CTCAG 2 cut(s) 230, 267
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 186, 274
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 7 cut(s) 149, 172, 175, 178, 337, 340, 493
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 4 cut(s) 11, 57, 690, 725
BsiHKAI GWGCWC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 4 cut(s) 12, 415, 561, 578
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 3 cut(s) 64, 414, 703
BsmAI GTCTC 3 cut(s) 406, 519, 642
BsmBI CGTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 4 cut(s) 11, 57, 690, 725
BsoBI CYCGRG 1 cut(s) 560
Bsp120I GGGCCC 1 cut(s) 723
Bsp1286I GDGCHC 2 cut(s) 275, 727
Bsp143I GATC 3 cut(s) 305, 367, 431
Bsp19I CCATGG 1 cut(s) 506
BspACI CCGC 3 cut(s) 68, 565, 728
BspANI GGCC 4 cut(s) 11, 57, 690, 725
BspCNI CTCAG 2 cut(s) 229, 268
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 2 cut(s) 725, 726
BspPI GGATC 2 cut(s) 313, 439
BsrFI RCCGGY 1 cut(s) 577
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 506, 560
BssMI GATC 3 cut(s) 305, 367, 431
BssT1I CCWWGG 1 cut(s) 506
Bst4CI ACNGT 3 cut(s) 82, 91, 385
Bst6I CTCTTC 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 2 cut(s) 216, 276
BstDSI CCRYGG 1 cut(s) 506
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 2 cut(s) 110, 250
BstKTI GATC 3 cut(s) 308, 370, 434
BstMAI GTCTC 3 cut(s) 406, 519, 642
BstMBI GATC 3 cut(s) 305, 367, 431
BstMWI GCNNNNNNNGC 3 cut(s) 191, 256, 359
BstSCI CCNGG 3 cut(s) 11, 559, 560
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 727
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 7 cut(s) 149, 172, 175, 178, 337, 340, 493
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 4 cut(s) 11, 57, 690, 725
BtgI CCRYGG 1 cut(s) 506
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 87, 103
Cac8I GCNNGC 1 cut(s) 579
CfoI GCGC 2 cut(s) 110, 250
Cfr10I RCCGGY 1 cut(s) 577
Cfr13I GGNCC 4 cut(s) 56, 688, 723, 724
Cfr9I CCCGGG 1 cut(s) 560
Csp6I GTAC 1 cut(s) 512
CviAII CATG 2 cut(s) 507, 547
CviQI GTAC 1 cut(s) 512
DdeI CTNAG 2 cut(s) 216, 276
DpnI GATC 3 cut(s) 307, 369, 433
DpnII GATC 3 cut(s) 305, 367, 431
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 667
EarI CTCTTC 1 cut(s) 667
EciI GGCGGA 1 cut(s) 580
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 506
Eco24I GRGCYC 2 cut(s) 275, 727
Eco53kI GAGCTC 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 506
EcoT38I GRGCYC 2 cut(s) 275, 727
ErhI CCWWGG 1 cut(s) 506
Esp3I CGTCTC 1 cut(s) 519
FaeI CATG 2 cut(s) 510, 550
FaiI YATR 7 cut(s) 213, 461, 508, 548, 632, 709, 711
FaqI GGGAC 1 cut(s) 150
FatI CATG 2 cut(s) 506, 546
FauI CCCGC 1 cut(s) 735
FauNDI CATATG 1 cut(s) 709
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 2 cut(s) 323, 387
Fnu4HI GCNGC 8 cut(s) 69, 138, 186, 189, 192, 351, 354, 482
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 2 cut(s) 275, 727
Fsp4HI GCNGC 8 cut(s) 69, 138, 186, 189, 192, 351, 354, 482
FspBI CTAG 1 cut(s) 162
FspI TGCGCA 1 cut(s) 109
GlaI GCGC 2 cut(s) 109, 249
GluI GCNGC 8 cut(s) 69, 138, 186, 189, 192, 351, 354, 482
HaeIII GGCC 4 cut(s) 11, 57, 690, 725
HapII CCGG 4 cut(s) 12, 415, 561, 578
HhaI GCGC 2 cut(s) 110, 250
Hin1II CATG 2 cut(s) 510, 550
Hin6I GCGC 2 cut(s) 108, 248
HinP1I GCGC 2 cut(s) 108, 248
HincII GTYRAC 2 cut(s) 127, 520
HindII GTYRAC 2 cut(s) 127, 520
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 3 cut(s) 281, 399, 493
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 4 cut(s) 12, 415, 561, 578
HphI GGTGA 6 cut(s) 97, 103, 191, 224, 280, 512
Hpy166II GTNNAC 4 cut(s) 127, 324, 388, 520
Hpy188I TCNGA 2 cut(s) 134, 277
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 4 cut(s) 127, 324, 388, 520
HpyCH4III ACNGT 3 cut(s) 82, 91, 385
HpyCH4V TGCA 2 cut(s) 339, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 256, 359
HpyF3I CTNAG 2 cut(s) 216, 276
Hsp92II CATG 2 cut(s) 510, 550
HspAI GCGC 2 cut(s) 108, 248
KroI GCCGGC 1 cut(s) 577
KroNI GCCGGC 1 cut(s) 579
Ksp22I TGATCA 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 3 cut(s) 305, 367, 431
LmnI GCTCC 4 cut(s) 134, 150, 199, 361
Lsp1109I GCAGC 7 cut(s) 149, 172, 175, 178, 337, 340, 493
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 85, 101
MalI GATC 3 cut(s) 307, 369, 433
MboI GATC 3 cut(s) 305, 367, 431
MboII GAAGA 3 cut(s) 300, 321, 684
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 2 cut(s) 275, 727
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 275, 408
MroNI GCCGGC 1 cut(s) 577
MseI TTAA 3 cut(s) 23, 126, 662
MslI CAYNNNNRTG 1 cut(s) 551
MspI CCGG 4 cut(s) 12, 415, 561, 578
MspR9I CCNGG 3 cut(s) 13, 561, 562
Mva1269I GAATGC 1 cut(s) 47
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 191, 256, 359
NaeI GCCGGC 1 cut(s) 579
NciI CCSGG 3 cut(s) 13, 561, 562
NcoI CCATGG 1 cut(s) 506
NdeI CATATG 1 cut(s) 709
NdeII GATC 3 cut(s) 305, 367, 431
NgoMIV GCCGGC 1 cut(s) 577
NlaIII CATG 2 cut(s) 510, 550
NlaIV GGNNCC 2 cut(s) 725, 726
NmuCI GTSAC 2 cut(s) 85, 101
NsbI TGCGCA 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PctI GAATGC 1 cut(s) 47
PdiI GCCGGC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 493
PkrI GCNGC 8 cut(s) 70, 139, 187, 190, 193, 352, 355, 483
PleI GAGTC 2 cut(s) 275, 407
PpsI GAGTC 2 cut(s) 275, 407
PshBI ATTAAT 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 725, 726
PspOMI GGGCCC 1 cut(s) 723
PspPI GGNCC 4 cut(s) 56, 688, 723, 724
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
RseI CAYNNNNRTG 1 cut(s) 551
SacI GAGCTC 1 cut(s) 275
SaqAI TTAA 3 cut(s) 23, 126, 662
SatI GCNGC 8 cut(s) 69, 138, 186, 189, 192, 351, 354, 482
Sau3AI GATC 3 cut(s) 305, 367, 431
Sau96I GGNCC 4 cut(s) 56, 688, 723, 724
SchI GAGTC 2 cut(s) 275, 408
ScrFI CCNGG 3 cut(s) 13, 561, 562
SduI GDGCHC 2 cut(s) 275, 727
SetI ASST 5 cut(s) 142, 275, 441, 471, 599
SfcI CTRYAG 1 cut(s) 384
SmaI CCCGGG 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 551
Sse9I AATT 1 cut(s) 5
SsiI CCGC 3 cut(s) 68, 565, 728
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 3 cut(s) 11, 559, 560
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 3 cut(s) 82, 91, 385
TaqI TCGA 1 cut(s) 605
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 3 cut(s) 23, 126, 662
Tru9I TTAA 3 cut(s) 23, 126, 662
TscAI CASTG 2 cut(s) 87, 110
TseFI GTSAC 2 cut(s) 85, 101
TseI GCWGC 7 cut(s) 137, 185, 188, 191, 350, 353, 481
Tsp45I GTSAC 2 cut(s) 85, 101
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 2 cut(s) 318, 537
TspMI CCCGGG 1 cut(s) 560
TspRI CASTG 2 cut(s) 87, 110
VspI ATTAAT 1 cut(s) 23
XmaI CCCGGG 1 cut(s) 560
XmiI GTMKAC 2 cut(s) 323, 387
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.