Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Reverse (-)

45006050 .. 45013741

Gene Structure 7692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1189200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCAATGGATTTGATGGCATCTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAACAGTTTACTGAATATGGTGACGGTGAGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATACTGGAGGTTCCCTTCAGTCGACTACCATTCCTCCTCAAGATCCTCAGAAACAACACCTGAGCTCCGAGGATTCAAATAAAAACTGTGGATCGTCGTCATCGTCGTCATCATCCAAATCCAACAAGTTCGGTCATGCATTTGAGTCTCTAGAGCTTCATGAACAACCTAGAGTCTCTCCCATACCCCCACCAGAGAAAAGACAGCGGGTTCCCTCAGCATATAACAGGTTTATTAAGGAGGAGATCCAAAGGATTAAAGCTAGTAACCCTGACATTAGTCATAGGGAAGCTTTTAGCAAGGCAGCTAAAAATTGGGCACATTTTCCCCACATTCACTTTGGATTAAAGCTGGATGCCAACAAGCAACCAAAGCTAGACCAGGCTTTTGCAGGAAAGGGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0045165 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

185

Amino Acids

20.29

Weight (kDa)

9.02

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	7 - 61	2.1e-30	YABBY, N-terminal
YABBY	PF04690	111 - 164	2.8e-35	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	2 cut(s)	71, 355
AclWI	GGATC	3 cut(s)	185, 247, 388
AcuI	CTGAAG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	7 cut(s)	213, 304, 410, 440, 455, 499, 523
AluI	AGCT	7 cut(s)	213, 304, 410, 440, 455, 499, 523
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	300, 328
AlwI	GGATC	3 cut(s)	185, 247, 388
ApeKI	GCWGC	1 cut(s)	452
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
AsuHPI	GGTGA	3 cut(s)	85, 118, 124
BaeGI	GKGCMC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	300, 328
BfaI	CTAG	4 cut(s)	299, 318, 411, 524
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	160, 360
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	2 cut(s)	29, 493
BoxI	GACNNNNGTC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	2 cut(s)	209, 364
BpuEI	CTTGAG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 197, 227
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	260, 508
BseMII	CTCAG	3 cut(s)	200, 209, 378
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	174, 404
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	300, 328
Bsp1286I	GDGCHC	2 cut(s)	215, 469
Bsp143I	GATC	3 cut(s)	190, 239, 393
BspACI	CCGC	2 cut(s)	71, 355
BspCNI	CTCAG	3 cut(s)	201, 208, 377
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	160, 360
BspPI	GGATC	3 cut(s)	185, 247, 388
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	190, 239, 393
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	3 cut(s)	92, 112, 236
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	195, 209, 364
BstF5I	GGATG	2 cut(s)	260, 508
BstKTI	GATC	3 cut(s)	193, 242, 396
BstMAI	GTCTC	2 cut(s)	300, 328
BstMBI	GATC	3 cut(s)	190, 239, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 520
BstNI	CCWGG	1 cut(s)	530
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	190, 393
BstYI	RGATCY	2 cut(s)	190, 393
BtsCI	GGATG	2 cut(s)	260, 508
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
CciI	TCATGA	1 cut(s)	307
CviAII	CATG	3 cut(s)	84, 284, 308
CviJI	RGCY	8 cut(s)	213, 304, 410, 440, 455, 499, 523, 533
CviKI_1	RGCY	8 cut(s)	213, 304, 410, 440, 455, 499, 523, 533
DdeI	CTNAG	3 cut(s)	195, 209, 364
DpnI	GATC	3 cut(s)	192, 241, 395
DpnII	GATC	3 cut(s)	190, 239, 393
Ecl136II	GAGCTC	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	528
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	215
FaeI	CATG	3 cut(s)	87, 287, 311
FaiI	YATR	9 cut(s)	39, 85, 104, 285, 309, 332, 370, 372, 432
FatI	CATG	3 cut(s)	83, 283, 307
FauI	CCCGC	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	247, 515
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	4 cut(s)	299, 318, 411, 524
GluI	GCNGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	174
Hin1II	CATG	3 cut(s)	87, 287, 311
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	3 cut(s)	221, 293, 321
HphI	GGTGA	3 cut(s)	85, 118, 124
Hpy166II	GTNNAC	3 cut(s)	43, 95, 171
Hpy188I	TCNGA	3 cut(s)	25, 198, 217
Hpy188III	TCNNGA	3 cut(s)	188, 299, 308
Hpy8I	GTNNAC	3 cut(s)	43, 95, 171
Hpy99I	CGWCG	2 cut(s)	247, 256
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	3 cut(s)	92, 112, 236
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	48, 57, 87, 287, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 520
HpyF3I	CTNAG	3 cut(s)	195, 209, 364
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	87, 287, 311
Kzo9I	GATC	3 cut(s)	190, 239, 393
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	138, 221, 354, 361, 432, 485, 515, 525, 542
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	2 cut(s)	29, 493
MaeI	CTAG	4 cut(s)	299, 318, 411, 524
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	106, 413
MalI	GATC	3 cut(s)	192, 241, 395
MboI	GATC	3 cut(s)	190, 239, 393
MflI	RGATCY	2 cut(s)	190, 393
MhlI	GDGCHC	2 cut(s)	215, 469
MluCI	AATT	1 cut(s)	460
MlyI	GAGTC	2 cut(s)	302, 330
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	7 cut(s)	149, 192, 195, 204, 211, 373, 382
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	5 cut(s)	147, 384, 405, 494, 553
MspA1I	CMGCKG	1 cut(s)	355
MspR9I	CCNGG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	2 cut(s)	54, 520
NdeII	GATC	3 cut(s)	190, 239, 393
NlaIII	CATG	3 cut(s)	87, 287, 311
NlaIV	GGNNCC	2 cut(s)	160, 360
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	289
PagI	TCATGA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	2 cut(s)	248, 251
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	2 cut(s)	301, 329
PpsI	GAGTC	2 cut(s)	301, 329
PshAI	GACNNNNGTC	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	160, 360
PsuI	RGATCY	2 cut(s)	190, 393
SacI	GAGCTC	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	5 cut(s)	147, 384, 405, 494, 553
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	3 cut(s)	190, 239, 393
SchI	GAGTC	2 cut(s)	302, 330
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	215, 469
SfaNI	GCATC	2 cut(s)	29, 493
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	2 cut(s)	71, 355
SspMI	CTAG	4 cut(s)	299, 318, 411, 524
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	92, 112, 236
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	5 cut(s)	147, 384, 405, 494, 553
Tru9I	TTAA	5 cut(s)	147, 384, 405, 494, 553
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	296, 324
TspRI	CASTG	1 cut(s)	50
XbaI	TCTAGA	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	4 cut(s)	299, 318, 411, 524
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.