Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Reverse (-)

48124046 .. 48130923

Gene Structure 6878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCAATGGAATTGACGGCATCCTCCGAACGTGTTTGTTATGTTCATTGCAACCTCTGCAACACCATTTTAGCGGTGAGTGTTCCAGCATTCAACGGCCCATTGACGGCGGCAACGACGACAGTGGTGACGGTGAGATGTGGTCACTGCGCAAATCTGCTGTCTGTTAACATCGGAGCAGCTTCGCTCCAATACCACTCAACTAGTCCCAGTCCTACCACTACTGCTGCTGCTGCTACTCCTCACCCTCATCCCCATACTCAGCATTATCATTCTCACCCTAACATTTTCGCGCACCAGAAGCAACATCAGGTGAGCTTTGAGGACTCCTCATCAAATAAGGACTACGGATCTTCATCATCATCGTCTACTTCTTCCAAATGCAACAAGTTTGCTGCTGCTCCTGCATTTGATCAGTCCTCTACTACTGTAGACCAACCAAGAGTCTCTCCCATTCGCCGTCAGTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

165

Amino Acids

17.51

Weight (kDa)

8.28

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	8 - 64	3.5e-23	YABBY, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	151
AccI	GTMKAC	2 cut(s)	368, 432
AccII	CGCG	1 cut(s)	293
AciI	CCGC	2 cut(s)	74, 110
AclWI	GGATC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	94
AhlI	ACTAGT	1 cut(s)	203
AluBI	AGCT	2 cut(s)	182, 318
AluI	AGCT	2 cut(s)	182, 318
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	6 cut(s)	179, 227, 230, 233, 395, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	2 cut(s)	152, 295
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	6 cut(s)	88, 139, 145, 236, 269, 325
BbvI	GCAGC	6 cut(s)	191, 214, 217, 220, 382, 385
BceAI	ACGGC	4 cut(s)	33, 112, 123, 444
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	451
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	7 cut(s)	111, 180, 228, 231, 234, 396, 399
BlsI	GCNGC	7 cut(s)	112, 181, 229, 232, 235, 397, 400
BmgT120I	GGNCC	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BsaBI	GATNNNNATC	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	355
BseGI	GGATG	2 cut(s)	20, 250
BseJI	GATNNNNATC	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	231, 319
BseXI	GCAGC	6 cut(s)	191, 214, 217, 220, 382, 385
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	192, 451
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	2 cut(s)	192, 451
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	350, 412
BspACI	CCGC	2 cut(s)	74, 110
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	293
BspPI	GGATC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	350, 412
Bst4CI	ACNGT	3 cut(s)	124, 133, 430
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	20, 250
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	152, 295
BstKTI	GATC	2 cut(s)	353, 415
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	2 cut(s)	350, 412
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 233, 301, 404
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	6 cut(s)	191, 214, 217, 220, 382, 385
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	20, 250
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	129, 145
CfoI	GCGC	2 cut(s)	152, 295
Cfr13I	GGNCC	1 cut(s)	98
CviJI	RGCY	3 cut(s)	99, 182, 318
CviKI_1	RGCY	3 cut(s)	99, 182, 318
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	352, 414
DpnII	GATC	2 cut(s)	350, 412
FaiI	YATR	2 cut(s)	42, 258
FaqI	GGGAC	2 cut(s)	192, 451
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	2 cut(s)	368, 432
Fnu4HI	GCNGC	7 cut(s)	111, 180, 228, 231, 234, 396, 399
FokI	GGATG	2 cut(s)	7, 237
Fsp4HI	GCNGC	7 cut(s)	111, 180, 228, 231, 234, 396, 399
FspBI	CTAG	1 cut(s)	204
FspI	TGCGCA	1 cut(s)	151
GlaI	GCGC	2 cut(s)	151, 294
GluI	GCNGC	7 cut(s)	111, 180, 228, 231, 234, 396, 399
HaeIII	GGCC	1 cut(s)	99
HhaI	GCGC	2 cut(s)	152, 295
Hin6I	GCGC	2 cut(s)	150, 293
HinP1I	GCGC	2 cut(s)	150, 293
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	326, 444
HpaI	GTTAAC	1 cut(s)	169
HphI	GGTGA	6 cut(s)	88, 139, 145, 236, 269, 325
Hpy166II	GTNNAC	3 cut(s)	169, 369, 433
Hpy188I	TCNGA	2 cut(s)	28, 176
Hpy8I	GTNNAC	3 cut(s)	169, 369, 433
Hpy99I	CGWCG	1 cut(s)	121
HpyCH4III	ACNGT	3 cut(s)	124, 133, 430
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	51, 60, 384, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 233, 301, 404
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	31
HspAI	GCGC	2 cut(s)	150, 293
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	350, 412
LmnI	GCTCC	3 cut(s)	176, 192, 406
LpnPI	CCDG	5 cut(s)	99, 223, 296, 311, 417
Lsp1109I	GCAGC	6 cut(s)	191, 214, 217, 220, 382, 385
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	127, 143
MalI	GATC	2 cut(s)	352, 414
MboI	GATC	2 cut(s)	350, 412
MboII	GAAGA	2 cut(s)	345, 366
MflI	RGATCY	1 cut(s)	350
MluCI	AATT	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	320, 453
MnlI	CCTC	8 cut(s)	34, 65, 252, 258, 316, 340, 430, 479
MseI	TTAA	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	89
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	57, 233, 301, 404
NdeII	GATC	2 cut(s)	350, 412
NmuCI	GTSAC	2 cut(s)	127, 143
NsbI	TGCGCA	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PctI	GAATGC	1 cut(s)	89
PkrI	GCNGC	7 cut(s)	112, 181, 229, 232, 235, 397, 400
PleI	GAGTC	2 cut(s)	320, 452
PpsI	GAGTC	2 cut(s)	320, 452
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	7 cut(s)	111, 180, 228, 231, 234, 396, 399
Sau3AI	GATC	2 cut(s)	350, 412
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	320, 453
SetI	ASST	5 cut(s)	34, 57, 184, 315, 320
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	429
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	2 cut(s)	74, 110
SspMI	CTAG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	124, 133, 430
TaiI	ACGT	1 cut(s)	34
TasI	AATT	1 cut(s)	11
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	129, 152
TseFI	GTSAC	2 cut(s)	127, 143
TseI	GCWGC	6 cut(s)	179, 227, 230, 233, 395, 398
Tsp45I	GTSAC	2 cut(s)	127, 143
TspDTI	ATGAA	2 cut(s)	35, 345
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	2 cut(s)	129, 152
XmiI	GTMKAC	2 cut(s)	368, 432
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.