Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Forward (+)

26150088 .. 26150985

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0243700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCAAAAGAACTCTCATCACTACAAGCAAGTTGGAGAAAGGCTACAAGGGATTCCGGCAAGGCCGCCACTCAGTACCGGAAACAAGGCTGAGGGAATTAGTAACCATCGTGGTCTTAGGCACAGTTATATGGTATCGTCTCCGAGGACCAGACTGGCGTGTACGTGCGGGAATAGGCCTGGGTTGAACCGGTGTAACCACCACGGGTTTGCCGTGCCCGGCGGGGAAAAATGGAGGAAAAACTATGCAAACAAGGAGATATTGAGGAGAGCACTTAGGACTGCACCGGCTCGAGGCTTAAGTCTTCGGTGGTGGAACTTTCAACCTACCCCTAGTCGGCTCTCTAACATGTCTATGGCTGAGAGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

123

Amino Acids

13.96

Weight (kDa)

11.56

Isoelectric Point (pI)

73.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	65, 168, 222
AfaI	GTAC	2 cut(s)	76, 163
AfiI	CCNNNNNNNGG	2 cut(s)	293, 336
AflII	CTTAAG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	348
AgeI	ACCGGT	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	187, 323
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	1 cut(s)	369
AluI	AGCT	1 cut(s)	369
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	2 cut(s)	62, 176
AsiGI	ACCGGT	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	333, 370
BfrI	CTTAAG	1 cut(s)	298
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	180, 219
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	180, 219
BpiI	GAAGAC	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	143, 179, 202
BsaWI	WCCGGW	2 cut(s)	77, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 336
Bse118I	RCCGGY	2 cut(s)	189, 286
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	3 cut(s)	143, 179, 202
BseLI	CCNNNNNNNGG	2 cut(s)	293, 336
BseMII	CTCAG	3 cut(s)	81, 85, 351
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	64, 178
BshTI	ACCGGT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	5 cut(s)	56, 78, 190, 219, 287
BslI	CCNNNNNNNGG	2 cut(s)	293, 336
BsmAI	GTCTC	1 cut(s)	144
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	64, 178
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	219, 274
BspACI	CCGC	3 cut(s)	65, 168, 222
BspANI	GGCC	2 cut(s)	64, 178
BspCNI	CTCAG	3 cut(s)	82, 84, 352
BspTI	CTTAAG	1 cut(s)	298
BsrFI	RCCGGY	2 cut(s)	189, 286
BsrI	ACTGG	1 cut(s)	159
BssAI	RCCGGY	2 cut(s)	189, 286
BssECI	CCNNGG	3 cut(s)	143, 179, 202
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	165
BstDEI	CTNAG	5 cut(s)	71, 90, 116, 275, 360
BstDSI	CCRYGG	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	178, 217
BstSLI	GKGCMC	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	64, 178
BtgI	CCRYGG	1 cut(s)	202
Cfr10I	RCCGGY	2 cut(s)	189, 286
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	75, 162
CspAI	ACCGGT	1 cut(s)	189
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	9 cut(s)	43, 64, 89, 178, 290, 297, 340, 359, 369
CviKI_1	RGCY	9 cut(s)	43, 64, 89, 178, 290, 297, 340, 359, 369
CviQI	GTAC	2 cut(s)	75, 162
DdeI	CTNAG	5 cut(s)	71, 90, 116, 275, 360
Eco147I	AGGCCT	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	352
FaiI	YATR	5 cut(s)	129, 131, 246, 350, 356
FatI	CATG	1 cut(s)	348
FauI	CCCGC	2 cut(s)	161, 215
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	333, 370
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	64, 178
HapII	CCGG	5 cut(s)	56, 78, 190, 219, 287
Hin1II	CATG	1 cut(s)	352
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	5 cut(s)	56, 78, 190, 219, 287
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	4, 248, 284
HpyF3I	CTNAG	5 cut(s)	71, 90, 116, 275, 360
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	9 cut(s)	69, 91, 140, 163, 165, 192, 203, 232, 300
MaeI	CTAG	2 cut(s)	333, 370
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	101, 194
MboII	GAAGA	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	219, 274
MluCI	AATT	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	85, 138, 228, 258, 287, 357
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	298
MspI	CCGG	5 cut(s)	56, 78, 190, 219, 287
MspR9I	CCNGG	2 cut(s)	180, 219
MvaI	CCWGG	1 cut(s)	180
NciI	CCSGG	1 cut(s)	219
NlaIII	CATG	1 cut(s)	352
NspI	RCATGY	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	178
PciI	ACATGT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	165
PscI	ACATGT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	147
PspXI	VCTCGAGB	1 cut(s)	291
RsaI	GTAC	2 cut(s)	76, 163
RsaNI	GTAC	2 cut(s)	75, 162
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	180, 219
SduI	GDGCHC	2 cut(s)	219, 274
SetI	ASST	3 cut(s)	167, 328, 371
Sfr274I	CTCGAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	291, 298
SmoI	CTYRAG	2 cut(s)	291, 298
Sse9I	AATT	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	3 cut(s)	65, 168, 222
SspMI	CTAG	2 cut(s)	333, 370
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	2 cut(s)	178, 217
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	96
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	147
XceI	RCATGY	1 cut(s)	352
XhoI	CTCGAG	1 cut(s)	291
XspI	CTAG	2 cut(s)	333, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.