FvH4_3g26250

Eukaryotic mitochondrial regulator protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011235
Physical Location & Seq
Reverse (-)
19190004 .. 19193741
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26250.t2

Sequence Viewer

Length: 1125 bp
ATGCAGAATTTGCACCGTCTTCTATCTCGTCTTTCCTCAACTTCAATCTCCCCCAGCACGAGTGCAGCAAAGGTTTTGAGGGAGAAGTGCAAAGTCGGTTTGGAAAGCAATGGTATTGAAGTTTGTAAGCTTATCAGCTCCCGATTTTTTTCTTTCCAATCAGGTGGTGATGGCCAAAATGAGGGTGGAGATGGGTGGGATAAACCTTCTGCTGGAACGTTTGGCGATAATGCATCAGATAATTTGGGGTGGGATAACACATCCTCATGGTCTCTTGGACTGACCAAGGAGCATTTTGATGGGGAGGTGGTTGGGCGGAGAGTAAGCGGAGATGAGAATCCTCAGTCTGCCATCATCAATAGTTTGCAAGAGATTGAGGATAGAATAAAGGAATTGGAGGCAGAGAACCGGAAGAGTAAAAAATTTGTTGATGGATGGGGAGACAGATTGAAGGAGATAAGTGTGCTGATGAAGCAAGTGCGTGAACCTGGTGCAAGAGGGTCTTATCTCAAGGACTCGGAGAAGGCTGAGATGTATCAACTGCACAAGGAAAACCCTGATGTTTACACTATTGAGCGCCTCGCGAAGGATTATAGGATTATGAGACAAAGAGTGCATGCCATTCTTTGGCTAAAGGAGCTTCAGGAGGAAGAGGAGAAGAAGCGTGGTCGTCCATTAGATGATTCTGTTGAGCTCCTGCTTGACACCTATCCTGAATTTTTCAGTTCCCATGACCGTGAATTTCATGTTGCATCACTTCCCTACAAACCTGACTTCAAGGTCATGCCCGAGGGTTGGGATGGTACCACCAGAGATTTGGATGAAGTCCACTACGAGATCTCCAAGAAGGAAGATGAGATGCTGTATCAAGAATTTGTCCAGAGGTTGAACTTCAACAAAATGAAAATGAGAGGAGAGGTTTTCCGCCACAAGTATAGTCGTCGTCGTTCTGCAGATGGGTGGAATTTTACTGTGGAGAAAATGGGACCCAAAGGAAAGCGTGGAGGTGGTGGTGGCTGGAAGTTTGTCAGTCTGCCAGATGGTTCTAGCCGACCACTGAATGAAAAGGAGAAAATGTATGTCAAGCGAGAAACTCCACGCCATCGACGCAAGATCCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bot1p MRP-L20

Protein Analysis

375

Amino Acids

43.13

Weight (kDa)

8.55

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-L20 PF12824 138 - 220 1.9e-06 Mitochondrial ribosomal protein subunit L20
Bot1p PF12298 169 - 234 7.3e-06 Eukaryotic mitochondrial regulator protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011235)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62270 AT5G62270
fragaria_vesca FvH4_3g26250 FvH4_3g26250
malus_domestica MD03G1229800.v1.1 MD11G1250300.v1.1
prunus_persica Prupe.4G179500_v2.0.a1
pyrus_communis pycom03g17740 pycom11g22150
rosa_chinensis RchiOBHm_Chr5g0048751
rosa_laevigata RLG00000034557
rosa_multiflora Rmu_sc0006382.1_g000016
rosa_roxburghii Rroxscaffold_1G00033070
rosa_rugosa Rorug05G0241000 Rorug05G0258100
rosa_samantha Rh5AG320800 Rh5CG356500 Rh5DG341800
rosa_wichuraiana Rw5G030140 Rw5G030270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc65I GGTACC 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 803
AccB7I CCANNNNNTGG 1 cut(s) 627
AccII CGCG 1 cut(s) 584
AciI CCGC 3 cut(s) 316, 327, 925
AclI AACGTT 1 cut(s) 218
AclWI GGATC 1 cut(s) 1108
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 6 cut(s) 7, 422, 716, 740, 872, 964
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 5 cut(s) 181, 212, 586, 627, 795
AgsI TTSAA 6 cut(s) 45, 119, 451, 778, 889, 895
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 4 cut(s) 130, 138, 640, 694
AluI AGCT 4 cut(s) 130, 138, 640, 694
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 3 cut(s) 276, 435, 598
AlwI GGATC 1 cut(s) 1108
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 6 cut(s) 7, 422, 716, 740, 872, 964
Asp718I GGTACC 1 cut(s) 803
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 986
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 1 cut(s) 986
BalI TGGCCA 1 cut(s) 174
BanI GGYRCC 1 cut(s) 803
BanII GRGCYC 1 cut(s) 696
BauI CACGAG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 489
BcoDI GTCTC 3 cut(s) 276, 435, 598
BfaI CTAG 1 cut(s) 1047
BfmI CTRYAG 1 cut(s) 951
BfoI RGCGCY 1 cut(s) 580
BglII AGATCT 1 cut(s) 837
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 986
BmeT110I CYCGRG 1 cut(s) 788
BmgT120I GGNCC 1 cut(s) 986
BmiI GGNNCC 3 cut(s) 805, 987, 988
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 3 cut(s) 242, 761, 849
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 285, 789
BsaWI WCCGGW 1 cut(s) 408
BsaXI ACNNNNNCTCC 4 cut(s) 824, 854, 1061, 1091
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 212, 586, 627, 795
Bse3DI GCAATG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 285, 789
BseGI GGATG 4 cut(s) 260, 440, 805, 826
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 5 cut(s) 181, 212, 586, 627, 795
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 356, 519
BseRI GAGGAG 2 cut(s) 668, 927
BseXI GCAGC 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 2 cut(s) 84, 527
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 803
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 1 cut(s) 409
BslFI GGGAC 1 cut(s) 999
BslI CCNNNNNNNGG 5 cut(s) 181, 212, 586, 627, 795
BsmAI GTCTC 3 cut(s) 276, 435, 598
BsmFI GGGAC 1 cut(s) 999
BsnI GGCC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 2 cut(s) 837, 1113
Bsp68I TCGCGA 1 cut(s) 584
BspACI CCGC 3 cut(s) 316, 327, 925
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 355, 520
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 3 cut(s) 805, 987, 988
BspMAI CTGCAG 1 cut(s) 955
BspPI GGATC 1 cut(s) 1108
BspT107I GGYRCC 1 cut(s) 803
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 285, 789
BssMI GATC 2 cut(s) 837, 1113
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 3 cut(s) 17, 737, 973
Bst6I CTCTTC 2 cut(s) 407, 645
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 2 cut(s) 342, 528
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 4 cut(s) 260, 440, 805, 826
BstFNI CGCG 1 cut(s) 584
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 2 cut(s) 840, 1116
BstMAI GTCTC 3 cut(s) 276, 435, 598
BstMBI GATC 2 cut(s) 837, 1113
BstMWI GCNNNNNNNGC 4 cut(s) 10, 472, 637, 1107
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 951
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 2 cut(s) 837, 1113
BstXI CCANNNNNNTGG 2 cut(s) 164, 817
BstYI RGATCY 2 cut(s) 837, 1113
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 4 cut(s) 260, 440, 805, 826
BtsIMutI CAGTG 1 cut(s) 1055
BtuMI TCGCGA 1 cut(s) 584
Cac8I GCNNGC 1 cut(s) 618
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 1 cut(s) 986
CseI GACGC 1 cut(s) 1116
CsiI ACCWGGT 1 cut(s) 487
Csp6I GTAC 1 cut(s) 804
CviAII CATG 6 cut(s) 267, 617, 731, 746, 784, 1122
CviJI RGCY 9 cut(s) 130, 138, 174, 527, 631, 640, 694, 1017, 1050
CviKI_1 RGCY 9 cut(s) 130, 138, 174, 527, 631, 640, 694, 1017, 1050
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 2 cut(s) 342, 528
DpnI GATC 2 cut(s) 839, 1115
DpnII GATC 2 cut(s) 837, 1113
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 407, 645
EarI CTCTTC 2 cut(s) 407, 645
EciI GGCGGA 2 cut(s) 331, 914
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 696
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 986
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 694
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 986
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 285
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 6 cut(s) 270, 620, 734, 749, 787, 1125
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FaqI GGGAC 1 cut(s) 999
FatI CATG 6 cut(s) 266, 616, 730, 745, 783, 1121
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 4 cut(s) 247, 447, 812, 833
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 1047
GlaI GCGC 1 cut(s) 578
GluI GCNGC 1 cut(s) 66
GsaI CCCAGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 580
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 409
HgaI GACGC 1 cut(s) 1116
HhaI GCGC 1 cut(s) 579
Hin1II CATG 6 cut(s) 270, 620, 734, 749, 787, 1125
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 337, 515, 683
HpaII CCGG 1 cut(s) 409
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 3 cut(s) 485, 565, 829
Hpy188I TCNGA 2 cut(s) 238, 520
Hpy188III TCNNGA 6 cut(s) 141, 583, 644, 713, 869, 880
Hpy8I GTNNAC 3 cut(s) 485, 565, 829
Hpy99I CGWCG 3 cut(s) 945, 948, 1110
HpyAV CCTTC 5 cut(s) 216, 445, 517, 580, 841
HpyCH4III ACNGT 3 cut(s) 17, 737, 973
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 472, 637, 1107
HpyF3I CTNAG 2 cut(s) 342, 528
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 6 cut(s) 270, 620, 734, 749, 787, 1125
HspAI GCGC 1 cut(s) 577
KflI GGGWCCC 1 cut(s) 986
KpnI GGTACC 1 cut(s) 807
Kzo9I GATC 2 cut(s) 837, 1113
LmnI GCTCC 4 cut(s) 143, 289, 637, 699
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 3 cut(s) 242, 761, 849
MabI ACCWGGT 1 cut(s) 487
MaeI CTAG 1 cut(s) 1047
MaeII ACGT 1 cut(s) 218
MalI GATC 2 cut(s) 839, 1115
MboI GATC 2 cut(s) 837, 1113
MboII GAAGA 5 cut(s) 11, 424, 662, 670, 863
MflI RGATCY 2 cut(s) 837, 1113
MhlI GDGCHC 1 cut(s) 696
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 8 cut(s) 7, 241, 392, 422, 716, 740, 872, 964
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 1 cut(s) 509
Mox20I TGGCCA 1 cut(s) 174
Mph1103I ATGCAT 1 cut(s) 235
MscI TGGCCA 1 cut(s) 174
MslI CAYNNNNRTG 3 cut(s) 265, 297, 735
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 4 cut(s) 10, 472, 637, 1107
NdeII GATC 2 cut(s) 837, 1113
NlaIII CATG 6 cut(s) 270, 620, 734, 749, 787, 1125
NlaIV GGNNCC 3 cut(s) 805, 987, 988
NruI TCGCGA 1 cut(s) 584
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 620
PaeI GCATGC 1 cut(s) 620
PfeI GAWTC 2 cut(s) 337, 683
PflMI CCANNNNNTGG 1 cut(s) 627
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PpuMI RGGWCCY 1 cut(s) 986
Psp124BI GAGCTC 1 cut(s) 696
Psp1406I AACGTT 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 1 cut(s) 487
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 3 cut(s) 805, 987, 988
PspPI GGNCC 1 cut(s) 986
PspPPI RGGWCCY 1 cut(s) 986
PstI CTGCAG 1 cut(s) 955
PsuI RGATCY 2 cut(s) 837, 1113
RruI TCGCGA 1 cut(s) 584
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 3 cut(s) 265, 297, 735
SacI GAGCTC 1 cut(s) 696
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 837, 1113
Sau96I GGNCC 1 cut(s) 986
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 1 cut(s) 696
SexAI ACCWGGT 1 cut(s) 487
SfaNI GCATC 3 cut(s) 242, 761, 849
SfcI CTRYAG 1 cut(s) 951
SinI GGWCC 1 cut(s) 986
SmiMI CAYNNNNRTG 3 cut(s) 265, 297, 735
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SphI GCATGC 1 cut(s) 620
Sse9I AATT 8 cut(s) 7, 241, 392, 422, 716, 740, 872, 964
SsiI CCGC 3 cut(s) 316, 327, 925
SspMI CTAG 1 cut(s) 1047
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 3 cut(s) 17, 737, 973
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 1105
TasI AATT 8 cut(s) 7, 241, 392, 422, 716, 740, 872, 964
TfiI GAWTC 2 cut(s) 337, 683
TscAI CASTG 1 cut(s) 1062
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 5 cut(s) 485, 734, 837, 917, 1077
TspRI CASTG 1 cut(s) 1062
Van91I CCANNNNNTGG 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 986
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 6 cut(s) 7, 422, 716, 740, 872, 964
XceI RCATGY 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 814
XspI CTAG 1 cut(s) 1047
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.