Rorug05G0258100

Eukaryotic mitochondrial regulator protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011235
Physical Location & Seq
Forward (+)
28973097 .. 28981301
8205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0258100.1

Sequence Viewer

Length: 1077 bp
ATGGAGGGTTTAGAATCTGAGGGCAATAGAAATGGAGCTCCGGCAGTTTACTGTGTCACCGGAGCCACTGGTTATATCGGGTCTTGGTTGGTGAAGACTCTGCTTGAAAGAGGCCACACTGTTCATGCCACAGTCCGCGATCCTGCCAAGTGTTTGCACCTTCTATCATTGTGGGTCGGCACTGACCGGTTGAGATTATTCCGAGCTGATTTGCAAGAAGAAGGAAGCTTCGACGAGGCTGTTAAGGGATGCGATGGTGTGTTTCATGTTGCAGCATCAATGCAATTCAGTGTTCCTGTGGAAGAGAACATTGAGGCTTATGTTCAATCAAATATCATCGACCCTGCAATCAAAGGAACCTTGGACCTCCTCAAATCCTGTGTGAAATCGGGTACCGTGAATAGGGTTGTGCTTACCTCTTCTATCAGTACTTTGACTGCCAAAGATAGCAGTGGAAATCCAATCTCTGTTGTTGATGAATCTTGTAAAACTCCAGTTGATCGTGTCTGGGATGCGAAAGCAAGTGGATGGGTTTATGCTCTTCCAAAGATCCTCACAGAGGAAGCAGCATTTAGATTTGCAAGTGAGAATGGGATTAATCTTGTTTCAGTAATAACAAGTACTGTTGGAGGACCATTTCTCACTTCCAATGTTCCATCAAGCATTCGAGTTCTTTTGTCACCATTGACAGGTGACTCTGAGCTCTATGGGATATTAACTGCTGTAAATGCAAGAATGGGATCAATTGTATTAGTTCACATTGAGGACATATGCAATGCCCACATTTTTTTAATGGAGAATAATGAAGCAGAAGGAAGATACATATGTGCTGCCAAAAGTATTCCAATGTCTGAGTTGGTTCTTTATCTAGCTCAGGCATTTCCTTCCTCAAATTCACGGAGATGCAGGGTTGTGGTGGAGGAAGAACAGAATAATCCAGCACCCTCTGAGATATCTTCAAAGAAGCTAAGTGATTTGGGTTTTAATTACAAGCATGGAGTAGAAGATATTATTCACCAGTCAGTTTCTTCTTGTCTGGATTTTGGCCTTCTACCTCGTACTGGAAATTGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bot1p MRP-L20

Protein Analysis

358

Amino Acids

38.67

Weight (kDa)

5.26

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 18 - 270 2.9e-25 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 18 - 141 2.5e-06 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 19 - 278 1.8e-12 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 19 - 164 1.3e-12 3-beta hydroxysteroid dehydrogenase/isomerase family
NmrA PF05368 19 - 114 1.1e-10 NmrA-like family
NAD_binding_4 PF07993 19 - 202 9e-08 Male sterility protein
NAD_binding_10 PF13460 21 - 147 4.3e-13 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011235)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62270 AT5G62270
fragaria_vesca FvH4_3g26250 FvH4_3g26250
malus_domestica MD03G1229800.v1.1 MD11G1250300.v1.1
prunus_persica Prupe.4G179500_v2.0.a1
pyrus_communis pycom03g17740 pycom11g22150
rosa_chinensis RchiOBHm_Chr5g0048751
rosa_laevigata RLG00000034557
rosa_multiflora Rmu_sc0006382.1_g000016
rosa_roxburghii Rroxscaffold_1G00033070
rosa_rugosa Rorug05G0241000 Rorug05G0258100
rosa_samantha Rh5AG320800 Rh5CG356500 Rh5DG341800
rosa_wichuraiana Rw5G030140 Rw5G030270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 392
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 136
AclWI GGATC 3 cut(s) 134, 544, 748
AcsI RAATTY 1 cut(s) 892
AfaI GTAC 4 cut(s) 394, 430, 622, 1060
AfiI CCNNNNNNNGG 4 cut(s) 402, 559, 689, 1061
AgeI ACCGGT 1 cut(s) 186
AgsI TTSAA 3 cut(s) 107, 326, 960
AluBI AGCT 6 cut(s) 38, 206, 228, 703, 872, 967
AluI AGCT 6 cut(s) 38, 206, 228, 703, 872, 967
Alw21I GWGCWC 2 cut(s) 40, 705
AlwI GGATC 3 cut(s) 134, 544, 748
AoxI GGCC 2 cut(s) 112, 1045
ApeKI GCWGC 3 cut(s) 272, 566, 830
ApoI RAATTY 1 cut(s) 892
AseI ATTAAT 1 cut(s) 597
AsiGI ACCGGT 1 cut(s) 186
Asp718I GGTACC 1 cut(s) 392
AspS9I GGNCC 2 cut(s) 364, 632
AsuHPI GGTGA 5 cut(s) 49, 103, 672, 704, 1007
AvaII GGWCC 2 cut(s) 364, 632
BaeI ACNNNNGTAYC 2 cut(s) 811, 844
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 2 cut(s) 40, 705
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 2 cut(s) 40, 705
BbvI GCAGC 3 cut(s) 284, 578, 817
BccI CCATC 3 cut(s) 248, 522, 664
BfaI CTAG 2 cut(s) 869, 1075
BisI GCNGC 3 cut(s) 273, 567, 831
BlsI GCNGC 3 cut(s) 274, 568, 832
BmcAI AGTACT 2 cut(s) 430, 622
Bme18I GGWCC 2 cut(s) 364, 632
BmgT120I GGNCC 2 cut(s) 364, 632
BmiI GGNNCC 3 cut(s) 64, 358, 394
BmsI GCATC 4 cut(s) 239, 284, 502, 893
BpiI GAAGAC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 873
BsaJI CCNNGG 1 cut(s) 360
BsaWI WCCGGW 2 cut(s) 59, 186
Bsc4I CCNNNNNNNGG 4 cut(s) 402, 559, 689, 1061
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 4 cut(s) 73, 494, 1018, 1066
Bse3DI GCAATG 1 cut(s) 781
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 3 cut(s) 254, 517, 533
BseLI CCNNNNNNNGG 4 cut(s) 402, 559, 689, 1061
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 5 cut(s) 9, 690, 843, 887, 939
BseNI ACTGG 4 cut(s) 73, 494, 1018, 1066
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 3 cut(s) 284, 578, 817
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 114, 1047
BshNI GGYRCC 1 cut(s) 392
BshTI ACCGGT 1 cut(s) 186
BsiHKAI GWGCWC 2 cut(s) 40, 705
BsiSI CCGG 3 cut(s) 41, 60, 187
BslI CCNNNNNNNGG 4 cut(s) 402, 559, 689, 1061
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 2 cut(s) 114, 1047
Bsp1286I GDGCHC 2 cut(s) 40, 705
Bsp143I GATC 4 cut(s) 139, 499, 549, 740
BspACI CCGC 1 cut(s) 136
BspANI GGCC 2 cut(s) 114, 1047
BspCNI CTCAG 5 cut(s) 10, 691, 844, 886, 940
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 64, 358, 394
BspPI GGATC 3 cut(s) 134, 544, 748
BspQI GCTCTTC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 781
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 4 cut(s) 73, 494, 1018, 1066
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 4 cut(s) 139, 499, 549, 740
BssT1I CCWWGG 1 cut(s) 360
Bst4CI ACNGT 5 cut(s) 53, 121, 133, 397, 625
Bst6I CTCTTC 3 cut(s) 297, 424, 546
BstDEI CTNAG 6 cut(s) 18, 699, 852, 873, 948, 968
BstENI CCTNNNNNAGG 1 cut(s) 557
BstF5I GGATG 3 cut(s) 254, 517, 533
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 4 cut(s) 142, 502, 552, 743
BstMBI GATC 4 cut(s) 139, 499, 549, 740
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 284, 578, 817
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BsuRI GGCC 2 cut(s) 114, 1047
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 254, 517, 533
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 5 cut(s) 66, 117, 180, 295, 457
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 364, 632
Csp6I GTAC 4 cut(s) 393, 429, 621, 1059
CspAI ACCGGT 1 cut(s) 186
CviAII CATG 3 cut(s) 125, 266, 995
CviQI GTAC 4 cut(s) 393, 429, 621, 1059
DdeI CTNAG 6 cut(s) 18, 699, 852, 873, 948, 968
DpnI GATC 4 cut(s) 141, 501, 551, 742
DpnII GATC 4 cut(s) 139, 499, 549, 740
Eam1104I CTCTTC 3 cut(s) 297, 424, 546
EarI CTCTTC 3 cut(s) 297, 424, 546
Ecl136II GAGCTC 2 cut(s) 38, 703
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 40, 705
Eco32I GATATC 1 cut(s) 954
Eco47I GGWCC 2 cut(s) 364, 632
Eco53kI GAGCTC 2 cut(s) 38, 703
EcoICRI GAGCTC 2 cut(s) 38, 703
EcoNI CCTNNNNNAGG 1 cut(s) 557
EcoRV GATATC 1 cut(s) 954
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 40, 705
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 3 cut(s) 128, 269, 998
FatI CATG 3 cut(s) 124, 265, 994
FauNDI CATATG 2 cut(s) 770, 824
Fnu4HI GCNGC 3 cut(s) 273, 567, 831
FokI GGATG 3 cut(s) 261, 524, 540
FriOI GRGCYC 2 cut(s) 40, 705
Fsp4HI GCNGC 3 cut(s) 273, 567, 831
FspBI CTAG 2 cut(s) 869, 1075
GluI GCNGC 3 cut(s) 273, 567, 831
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 2 cut(s) 114, 1047
HapII CCGG 3 cut(s) 41, 60, 187
Hin1II CATG 3 cut(s) 128, 269, 998
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 4 cut(s) 14, 97, 479, 695
HpaII CCGG 3 cut(s) 41, 60, 187
HphI GGTGA 5 cut(s) 49, 103, 672, 704, 1007
Hpy166II GTNNAC 2 cut(s) 49, 757
Hpy188I TCNGA 5 cut(s) 19, 203, 700, 853, 949
Hpy188III TCNNGA 1 cut(s) 1037
Hpy8I GTNNAC 2 cut(s) 49, 757
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 5 cut(s) 170, 215, 806, 894, 1058
HpyCH4III ACNGT 5 cut(s) 53, 121, 133, 397, 625
HpyCH4V TGCA 9 cut(s) 157, 214, 272, 283, 347, 581, 731, 774, 906
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 6 cut(s) 18, 699, 852, 873, 948, 968
Hsp92II CATG 3 cut(s) 128, 269, 998
KpnI GGTACC 1 cut(s) 396
Kzo9I GATC 4 cut(s) 139, 499, 549, 740
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 3 cut(s) 35, 43, 62
Lsp1109I GCAGC 3 cut(s) 284, 578, 817
LweI GCATC 4 cut(s) 239, 284, 502, 893
MaeI CTAG 2 cut(s) 869, 1075
MaeIII GTNAC 4 cut(s) 55, 678, 692, 1070
MalI GATC 4 cut(s) 141, 501, 551, 742
MboI GATC 4 cut(s) 139, 499, 549, 740
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 2 cut(s) 40, 705
MluCI AATT 5 cut(s) 284, 744, 892, 985, 1066
MlyI GAGTC 2 cut(s) 91, 689
MmeI TCCRAC 1 cut(s) 607
MseI TTAA 5 cut(s) 243, 597, 716, 791, 984
MslI CAYNNNNRTG 1 cut(s) 901
MspI CCGG 3 cut(s) 41, 60, 187
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 1 cut(s) 663
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 728
NdeI CATATG 2 cut(s) 770, 824
NdeII GATC 4 cut(s) 139, 499, 549, 740
NlaIII CATG 3 cut(s) 128, 269, 998
NlaIV GGNNCC 3 cut(s) 64, 358, 394
NmuCI GTSAC 3 cut(s) 55, 678, 692
PciSI GCTCTTC 1 cut(s) 546
PctI GAATGC 1 cut(s) 663
PfeI GAWTC 2 cut(s) 14, 479
PinAI ACCGGT 1 cut(s) 186
PkrI GCNGC 3 cut(s) 274, 568, 832
PleI GAGTC 2 cut(s) 91, 689
PpsI GAGTC 2 cut(s) 91, 689
PshBI ATTAAT 1 cut(s) 597
Psp124BI GAGCTC 2 cut(s) 40, 705
PspN4I GGNNCC 3 cut(s) 64, 358, 394
PspPI GGNCC 2 cut(s) 364, 632
PsuI RGATCY 1 cut(s) 549
RsaI GTAC 4 cut(s) 394, 430, 622, 1060
RsaNI GTAC 4 cut(s) 393, 429, 621, 1059
RseI CAYNNNNRTG 1 cut(s) 901
SacI GAGCTC 2 cut(s) 40, 705
SapI GCTCTTC 1 cut(s) 546
SaqAI TTAA 5 cut(s) 243, 597, 716, 791, 984
SatI GCNGC 3 cut(s) 273, 567, 831
Sau3AI GATC 4 cut(s) 139, 499, 549, 740
Sau96I GGNCC 2 cut(s) 364, 632
ScaI AGTACT 2 cut(s) 430, 622
SchI GAGTC 2 cut(s) 91, 689
SduI GDGCHC 2 cut(s) 40, 705
SfaNI GCATC 4 cut(s) 239, 284, 502, 893
SinI GGWCC 2 cut(s) 364, 632
SmiMI CAYNNNNRTG 1 cut(s) 901
Sse9I AATT 5 cut(s) 284, 744, 892, 985, 1066
SsiI CCGC 1 cut(s) 136
SspMI CTAG 2 cut(s) 869, 1075
SstI GAGCTC 2 cut(s) 40, 705
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 5 cut(s) 53, 121, 133, 397, 625
TaqI TCGA 3 cut(s) 231, 339, 667
TasI AATT 5 cut(s) 284, 744, 892, 985, 1066
TatI WGTACW 2 cut(s) 428, 620
TfiI GAWTC 2 cut(s) 14, 479
Tru1I TTAA 5 cut(s) 243, 597, 716, 791, 984
Tru9I TTAA 5 cut(s) 243, 597, 716, 791, 984
TscAI CASTG 5 cut(s) 73, 124, 187, 295, 457
TseFI GTSAC 3 cut(s) 55, 678, 692
TseI GCWGC 3 cut(s) 272, 566, 830
Tsp45I GTSAC 3 cut(s) 55, 678, 692
TspDTI ATGAA 4 cut(s) 113, 254, 492, 819
TspGWI ACGGA 1 cut(s) 913
TspRI CASTG 5 cut(s) 73, 124, 187, 295, 457
VpaK11BI GGWCC 2 cut(s) 364, 632
VspI ATTAAT 1 cut(s) 597
XagI CCTNNNNNAGG 1 cut(s) 557
XapI RAATTY 1 cut(s) 892
XspI CTAG 2 cut(s) 869, 1075
ZrmI AGTACT 2 cut(s) 430, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.