pycom03g17740

Eukaryotic mitochondrial regulator protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011235
Physical Location & Seq
Reverse (-)
18851034 .. 18853248
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17740.3

Sequence Viewer

Length: 1194 bp
ATGCAGAATCTGCACCGTGTTATTTCTCGTCTTTCCTCAACTTCACTTGGCACGAGTACAGCAAAGTTTCTGAGAGAGAAAAGCAAACCGACTTTGGGAAGCACTGGTGTGCTTCCATTGAAGAATGGTATCGAATCTTGTCAGTTTATCACTCCCCGATTCTTTTCTTTCAGCTCTGGAGGTGATGGCGAAAATGCTGGTAAAGACGAGTGGGATAAACCCCCGTCTGGGACATTCAGCAATAATGCATCAGATGATTTGGGGTGGGATAAACCTCCGCCTGGAACATTTAGCAATAATGCATCAGATGATTTGGGGTGGGATACTGCATCAGCGTGGTCGACTGGATTGACCAAGGAGCATTTTGATGGGGAGGTGGTAGGCCGACGGACAAGTGGGCCCGACCCATCTCAATCATCAGTGGTATCTGGTTTGCAAGAAATTGAGGACAGGATAAGAGAACTGGAAGAAGAGAACAAGAAAAGCAAAAAGTTTGTGGATGGGTGGGGAGAAAGATTGCGGGAGATAAGTGTGCTTCTGAAGCAAGTGCGTGAGCCTGGTGCCAGAGGGTCTTATCTCAAGGACTCAGAGAAGGCTGAGATGTATAAGAAGCACAAGGAAAACCCTGAGGTTTATACTGTTGAGAGGCTGGCTAAGGATTATAGGATTATGAGGCAGAGAGTGCATGCTATTCTTTGGCTCAAAGAGCTTGAGGAGGAAGAGGAGAAAAAGCTTGGTCGTCCTTTAGATGATTCTGTTGAGCTCCTGCTTGACACCTGCCCAGAATTTTTTAATTCTCATGACCGCGAATTCCACGTGGCATCCCTTCCCTACAAACCTGATTTCAAGGTTATGCCAGAGGGTTGGGACGGTACCACCAGAGATTTGGATGAAGTTCATTATGAAATCTCGAAGAAAGAAGATGAAATGCTCTATCAAGAATTTGTCCAGAGAATGAACTTCAACAAAATGAAAATGAAAGGAGAGGTCTTCTGCCACAAGCATAGTCGTCGTCGGACTTCACACGGGTGGAACTTCACCGTTGAAAAACTCGGACCCAGAGGAAAGCGTGGAGGTGGCGGTGGCTGGAAGTTTGTCAGCCAGCCAGATGGTTCAAGCCGACCGCTGAATGAAACGGAGAAAATGTACGTGAAGCGAGAAACACCCCGCCGCCGGCGCAAGATCCTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bot1p MRP-L20

Protein Analysis

398

Amino Acids

45.49

Weight (kDa)

8.21

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011235)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62270 AT5G62270
fragaria_vesca FvH4_3g26250 FvH4_3g26250
malus_domestica MD03G1229800.v1.1 MD11G1250300.v1.1
prunus_persica Prupe.4G179500_v2.0.a1
pyrus_communis pycom03g17740 pycom11g22150
rosa_chinensis RchiOBHm_Chr5g0048751
rosa_laevigata RLG00000034557
rosa_multiflora Rmu_sc0006382.1_g000016
rosa_roxburghii Rroxscaffold_1G00033070
rosa_rugosa Rorug05G0241000 Rorug05G0258100
rosa_samantha Rh5AG320800 Rh5CG356500 Rh5DG341800
rosa_wichuraiana Rw5G030140 Rw5G030270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 785
Acc36I ACCTGC 1 cut(s) 785
Acc65I GGTACC 1 cut(s) 872
AccB1I GGYRCC 2 cut(s) 560, 872
AccI GTMKAC 1 cut(s) 341
AccII CGCG 1 cut(s) 807
AciI CCGC 7 cut(s) 278, 520, 805, 1080, 1124, 1168, 1171
AclWI GGATC 1 cut(s) 1177
AcsI RAATTY 3 cut(s) 785, 809, 941
AcuI CTGAAG 1 cut(s) 560
AcvI CACGTG 1 cut(s) 817
AfaI GTAC 3 cut(s) 58, 874, 1148
AfiI CCNNNNNNNGG 5 cut(s) 95, 227, 228, 281, 1173
AgsI TTSAA 5 cut(s) 121, 847, 964, 1046, 1116
AjnI CCWGG 2 cut(s) 280, 556
AleI CACNNNNGTG 2 cut(s) 107, 1027
AluBI AGCT 4 cut(s) 174, 709, 733, 763
AluI AGCT 4 cut(s) 174, 709, 733, 763
Alw21I GWGCWC 1 cut(s) 765
AlwI GGATC 1 cut(s) 1177
AlwNI CAGNNNCTG 1 cut(s) 10
AoxI GGCC 2 cut(s) 382, 398
ApaI GGGCCC 1 cut(s) 402
ApoI RAATTY 3 cut(s) 785, 809, 941
Asp718I GGTACC 1 cut(s) 872
AspLEI GCGC 1 cut(s) 1179
AspS9I GGNCC 3 cut(s) 398, 399, 1055
AsuHPI GGTGA 2 cut(s) 194, 1030
AvaII GGWCC 1 cut(s) 1055
AxyI CCTNAGG 1 cut(s) 627
BaeGI GKGCMC 1 cut(s) 402
BanI GGYRCC 2 cut(s) 560, 872
BanII GRGCYC 2 cut(s) 402, 765
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 817
BbsI GAAGAC 1 cut(s) 982
Bbv12I GWGCWC 1 cut(s) 765
BccI CCATC 5 cut(s) 179, 362, 415, 494, 1103
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 2 cut(s) 282, 558
BciVI GTATCC 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 785
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 1 cut(s) 1171
BlsI GCNGC 1 cut(s) 1172
Bme1390I CCNGG 2 cut(s) 282, 558
Bme18I GGWCC 1 cut(s) 1055
BmgT120I GGNCC 3 cut(s) 398, 399, 1055
BmiI GGNNCC 4 cut(s) 400, 562, 874, 1057
BmrFI CCNGG 2 cut(s) 282, 558
BmsI GCATC 4 cut(s) 257, 311, 338, 830
BpiI GAAGAC 1 cut(s) 982
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 654
BpuEI CTTGAG 2 cut(s) 563, 731
BsaAI YACGTR 2 cut(s) 817, 1150
BsaJI CCNNGG 1 cut(s) 354
BsaXI ACNNNNNCTCC 2 cut(s) 1130, 1160
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 227, 228, 281, 1173
Bse118I RCCGGY 1 cut(s) 1173
Bse1I ACTGG 3 cut(s) 109, 349, 468
Bse21I CCTNAGG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 282, 558
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 3 cut(s) 505, 821, 895
BseLI CCNNNNNNNGG 5 cut(s) 95, 227, 228, 281, 1173
BseMII CTCAG 4 cut(s) 62, 588, 600, 618
BseNI ACTGG 3 cut(s) 109, 349, 468
BseRI GAGGAG 2 cut(s) 728, 737
BseSI GKGCMC 1 cut(s) 402
Bsh1236I CGCG 1 cut(s) 807
Bsh1285I CGRYCG 1 cut(s) 1124
BshFI GGCC 2 cut(s) 384, 400
BshNI GGYRCC 2 cut(s) 560, 872
BsiEI CGRYCG 1 cut(s) 1124
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 1 cut(s) 1174
BslFI GGGAC 2 cut(s) 244, 881
BslI CCNNNNNNNGG 5 cut(s) 95, 227, 228, 281, 1173
BsmFI GGGAC 2 cut(s) 244, 881
BsnI GGCC 2 cut(s) 384, 400
Bsp120I GGGCCC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 402, 765
Bsp143I GATC 1 cut(s) 1182
BspACI CCGC 7 cut(s) 278, 520, 805, 1080, 1124, 1168, 1171
BspANI GGCC 2 cut(s) 384, 400
BspCNI CTCAG 4 cut(s) 63, 589, 599, 619
BspFNI CGCG 1 cut(s) 807
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 4 cut(s) 400, 562, 874, 1057
BspMI ACCTGC 1 cut(s) 785
BspPI GGATC 1 cut(s) 1177
BspT107I GGYRCC 2 cut(s) 560, 872
BsrFI RCCGGY 1 cut(s) 1173
BsrI ACTGG 3 cut(s) 109, 349, 468
BssAI RCCGGY 1 cut(s) 1173
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 1 cut(s) 1182
BssSI CACGAG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 282, 558
Bst4CI ACNGT 4 cut(s) 17, 640, 872, 1042
Bst6I CTCTTC 2 cut(s) 465, 714
BstAPI GCANNNNNTGC 2 cut(s) 10, 682
BstBAI YACGTR 2 cut(s) 817, 1150
BstC8I GCNNGC 4 cut(s) 651, 687, 1103, 1175
BstDEI CTNAG 5 cut(s) 71, 586, 597, 627, 654
BstF5I GGATG 3 cut(s) 505, 821, 895
BstFNI CGCG 1 cut(s) 807
BstHHI GCGC 1 cut(s) 1179
BstKTI GATC 1 cut(s) 1185
BstMBI GATC 1 cut(s) 1182
BstMCI CGRYCG 1 cut(s) 1124
BstMWI GCNNNNNNNGC 5 cut(s) 10, 541, 682, 706, 1176
BstNI CCWGG 2 cut(s) 282, 558
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 2 cut(s) 280, 556
BstSLI GKGCMC 1 cut(s) 402
BstUI CGCG 1 cut(s) 807
BstV2I GAAGAC 1 cut(s) 982
BstX2I RGATCY 1 cut(s) 1182
BstXI CCANNNNNNTGG 3 cut(s) 864, 886, 1109
BstYI RGATCY 1 cut(s) 1182
Bsu36I CCTNAGG 1 cut(s) 627
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 384, 400
BtsCI GGATG 3 cut(s) 505, 821, 895
BtsIMutI CAGTG 2 cut(s) 102, 426
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 4 cut(s) 651, 687, 1103, 1175
CaiI CAGNNNCTG 1 cut(s) 10
CciI TCATGA 1 cut(s) 799
CfoI GCGC 1 cut(s) 1179
Cfr10I RCCGGY 1 cut(s) 1173
Cfr13I GGNCC 3 cut(s) 398, 399, 1055
Csp6I GTAC 3 cut(s) 57, 873, 1147
CviAII CATG 2 cut(s) 686, 800
CviQI GTAC 3 cut(s) 57, 873, 1147
DdeI CTNAG 5 cut(s) 71, 586, 597, 627, 654
DpnI GATC 1 cut(s) 1184
DpnII GATC 1 cut(s) 1182
Eam1104I CTCTTC 2 cut(s) 465, 714
EarI CTCTTC 2 cut(s) 465, 714
EciI GGCGGA 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 402, 765
Eco47I GGWCC 1 cut(s) 1055
Eco53kI GAGCTC 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 560
Eco72I CACGTG 1 cut(s) 817
Eco81I CCTNAGG 1 cut(s) 627
EcoICRI GAGCTC 1 cut(s) 763
EcoRI GAATTC 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 280, 556
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 2 cut(s) 250, 304
EcoT38I GRGCYC 2 cut(s) 402, 765
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 2 cut(s) 689, 803
FaiI YATR 9 cut(s) 606, 636, 663, 671, 687, 801, 854, 903, 1005
FaqI GGGAC 2 cut(s) 244, 881
FatI CATG 2 cut(s) 685, 799
FauI CCCGC 2 cut(s) 513, 1175
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 1 cut(s) 1171
FokI GGATG 3 cut(s) 512, 808, 902
FriOI GRGCYC 2 cut(s) 402, 765
Fsp4HI GCNGC 1 cut(s) 1171
GlaI GCGC 1 cut(s) 1178
GluI GCNGC 1 cut(s) 1171
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 384, 400
HapII CCGG 1 cut(s) 1174
HhaI GCGC 1 cut(s) 1179
Hin1II CATG 2 cut(s) 689, 803
Hin6I GCGC 1 cut(s) 1177
HinP1I GCGC 1 cut(s) 1177
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 5 cut(s) 7, 134, 159, 584, 752
HpaII CCGG 1 cut(s) 1174
HphI GGTGA 2 cut(s) 194, 1030
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 7 cut(s) 72, 253, 307, 540, 589, 1017, 1055
Hpy188III TCNNGA 5 cut(s) 177, 800, 910, 938, 949
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 3 cut(s) 390, 1014, 1017
HpyAV CCTTC 2 cut(s) 586, 836
HpyCH4III ACNGT 4 cut(s) 17, 640, 872, 1042
HpyCH4IV ACGT 2 cut(s) 816, 1149
HpyCH4V TGCA 7 cut(s) 4, 13, 248, 302, 329, 436, 685
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 541, 682, 706, 1176
HpyF3I CTNAG 5 cut(s) 71, 586, 597, 627, 654
HpySE526I ACGT 2 cut(s) 816, 1149
Hsp92II CATG 2 cut(s) 689, 803
HspAI GCGC 1 cut(s) 1177
KpnI GGTACC 1 cut(s) 876
KroI GCCGGC 1 cut(s) 1173
KroNI GCCGGC 1 cut(s) 1175
Kzo9I GATC 1 cut(s) 1182
LmnI GCTCC 2 cut(s) 358, 768
LweI GCATC 4 cut(s) 257, 311, 338, 830
MaeII ACGT 2 cut(s) 816, 1149
MalI GATC 1 cut(s) 1184
MboI GATC 1 cut(s) 1182
MboII GAAGA 7 cut(s) 133, 479, 482, 731, 925, 932, 982
MflI RGATCY 1 cut(s) 1182
MhlI GDGCHC 2 cut(s) 402, 765
MluCI AATT 5 cut(s) 441, 785, 793, 809, 941
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 995
Mph1103I ATGCAT 2 cut(s) 250, 304
MreI CGCCGGCG 1 cut(s) 1173
MroNI GCCGGC 1 cut(s) 1173
MseI TTAA 1 cut(s) 792
MslI CAYNNNNRTG 4 cut(s) 107, 334, 366, 1027
MspA1I CMGCKG 1 cut(s) 1126
MspI CCGG 1 cut(s) 1174
MspR9I CCNGG 2 cut(s) 282, 558
MvaI CCWGG 2 cut(s) 282, 558
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 5 cut(s) 10, 541, 682, 706, 1176
NaeI GCCGGC 1 cut(s) 1175
NdeII GATC 1 cut(s) 1182
NgoMIV GCCGGC 1 cut(s) 1173
NlaIII CATG 2 cut(s) 689, 803
NlaIV GGNNCC 4 cut(s) 400, 562, 874, 1057
NsiI ATGCAT 2 cut(s) 250, 304
NspI RCATGY 1 cut(s) 689
OliI CACNNNNGTG 2 cut(s) 107, 1027
PaeI GCATGC 1 cut(s) 689
PagI TCATGA 1 cut(s) 799
PaqCI CACCTGC 1 cut(s) 785
PdiI GCCGGC 1 cut(s) 1175
PfeI GAWTC 4 cut(s) 7, 134, 159, 752
PkrI GCNGC 1 cut(s) 1172
PleI GAGTC 1 cut(s) 578
PmaCI CACGTG 1 cut(s) 817
PmlI CACGTG 1 cut(s) 817
PpsI GAGTC 1 cut(s) 578
Ppu21I YACGTR 2 cut(s) 817, 1150
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 2 cut(s) 280, 556
PspCI CACGTG 1 cut(s) 817
PspGI CCWGG 2 cut(s) 280, 556
PspN4I GGNNCC 4 cut(s) 400, 562, 874, 1057
PspOMI GGGCCC 1 cut(s) 398
PspPI GGNCC 3 cut(s) 398, 399, 1055
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 1182
RsaI GTAC 3 cut(s) 58, 874, 1148
RsaNI GTAC 3 cut(s) 57, 873, 1147
RseI CAYNNNNRTG 4 cut(s) 107, 334, 366, 1027
SacI GAGCTC 1 cut(s) 765
SalI GTCGAC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 792
SatI GCNGC 1 cut(s) 1171
Sau3AI GATC 1 cut(s) 1182
Sau96I GGNCC 3 cut(s) 398, 399, 1055
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 2 cut(s) 282, 558
SduI GDGCHC 2 cut(s) 402, 765
SfaNI GCATC 4 cut(s) 257, 311, 338, 830
SgrAI CRCCGGYG 1 cut(s) 1173
SinI GGWCC 1 cut(s) 1055
SmiMI CAYNNNNRTG 4 cut(s) 107, 334, 366, 1027
SmlI CTYRAG 2 cut(s) 578, 710
SmoI CTYRAG 2 cut(s) 578, 710
SphI GCATGC 1 cut(s) 689
Sse9I AATT 5 cut(s) 441, 785, 793, 809, 941
SsiI CCGC 7 cut(s) 278, 520, 805, 1080, 1124, 1168, 1171
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 280, 556
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 4 cut(s) 17, 640, 872, 1042
TaiI ACGT 2 cut(s) 819, 1152
TaqI TCGA 3 cut(s) 132, 341, 911
TasI AATT 5 cut(s) 441, 785, 793, 809, 941
TatI WGTACW 1 cut(s) 56
TauI GCSGC 1 cut(s) 1173
TfiI GAWTC 4 cut(s) 7, 134, 159, 752
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 2 cut(s) 109, 426
TspDTI ATGAA 8 cut(s) 887, 906, 918, 939, 971, 986, 992, 1146
TspGWI ACGGA 3 cut(s) 403, 1151, 1179
TspRI CASTG 2 cut(s) 109, 426
VpaK11BI GGWCC 1 cut(s) 1055
XapI RAATTY 3 cut(s) 785, 809, 941
XceI RCATGY 1 cut(s) 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 341
Zsp2I ATGCAT 2 cut(s) 250, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.