Prupe.4G179500_v2.0.a1

Eukaryotic mitochondrial regulator protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011235
Physical Location & Seq
Forward (+)
10635018 .. 10638518
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G179500.1

Sequence Viewer

Length: 1122 bp
ATGCAGAATCTTCACCGTGTTATATCCCGTCTTTCCTCAACTTCACTTGGCACAAGCACGAGCGCAGCAAAGTTTCTGAGAGAGAAAAGTAAACCCACTTTGGGAAACAATGATGTGCTTTCATTGAAGAATGGTACCGAAGCTTCTCAATTTATCACCTCCCGTTTTTTTTCTTTCAAATCTGGAGGTGATGGTGAAAATAATGGCAAAGATACATTTAGCAATAACGCATCCGATGATTTGGGTTGGGATTCTTTATCCGCATGGTCGACTGGATTGACCAAGGAGCATTTTGATGGGGAGGTGGCTGGCAGACGGAAAAGTGGAGACGACACATCTCAATCTTCAGTCATCTCTGGTCTGCAAGAGATTGAAGATAGAATAAAGGAACTGGAGGAAGAGAACCGGAAAAGTAAGCGGTTTGTGGATGGATGGGGAGAGAGATTAAAAGAGGTAAGTGCACTTTTGAAGCAAGTGCGTGAGCCGGGTGCAAGGGGGTCTTATCTCAAGGACTCAGAAAAGGCTGAGATGTATCGGTTGCACAAGGAAAATCCTGAGGTTTACACTGTTGAGCGGCTGGCCAAGGATTATAGAATTATGAGGCAGAGAGTGCATGCCATTCTTTGGCTCAAGGAGCTGGAGGAAGAAGAGGAAAAAAAGCTTGGTCGTCCTTTAGATGATTCTGTTGAGCTCCTGCTTGACACCTGTCCTGAATTTTTCAATTCTCATGACCGTGAATTCCATGTCGCTTCCCTTCCTTACAAACCTGACTTCAAGGTTATGCCAGAGGGTTGGGATGGTACCACCAGAGATTTGGACGAAGTCCACTATGAGATCTCCATGAAAGAAGATGAAATGCTTTATCAAGAATTTGTCCAGAGGATGAACTTCAACAAAAAGAAAATGAAAGGGGAGGTTTTCTGCCACAAGCATAGTCGTCGTCGTACTTCGGATGGGTGGAACTTTACAGTGGAGAAACTAGGACCCAGAGGAAAGCGTGGAGGTGGTGGTGGCTGGAAGTTTGTAAGCCTGCCAGATGGTTCCAGCCGACCGCTGAATGAAATGGAGAAAATGTACGTGAAGCGAGAAACACCCCGCCGCAGACGCAAGATCCTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bot1p MRP-L20

Protein Analysis

374

Amino Acids

43.0

Weight (kDa)

8.57

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011235)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62270 AT5G62270
fragaria_vesca FvH4_3g26250 FvH4_3g26250
malus_domestica MD03G1229800.v1.1 MD11G1250300.v1.1
prunus_persica Prupe.4G179500_v2.0.a1
pyrus_communis pycom03g17740 pycom11g22150
rosa_chinensis RchiOBHm_Chr5g0048751
rosa_laevigata RLG00000034557
rosa_multiflora Rmu_sc0006382.1_g000016
rosa_roxburghii Rroxscaffold_1G00033070
rosa_rugosa Rorug05G0241000 Rorug05G0258100
rosa_samantha Rh5AG320800 Rh5CG356500 Rh5DG341800
rosa_wichuraiana Rw5G030140 Rw5G030270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 134, 800
AccB1I GGYRCC 2 cut(s) 134, 800
AccB7I CCANNNNNTGG 1 cut(s) 624
AccBSI CCGCTC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 269
AciI CCGC 6 cut(s) 261, 418, 574, 1052, 1096, 1099
AclWI GGATC 1 cut(s) 1105
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 3 cut(s) 713, 737, 869
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 4 cut(s) 136, 802, 946, 1076
AfiI CCNNNNNNNGG 2 cut(s) 101, 624
AgsI TTSAA 7 cut(s) 127, 178, 374, 469, 721, 775, 892
AjuI GAANNNNNNNTTGG 2 cut(s) 645, 677
AluBI AGCT 4 cut(s) 143, 637, 661, 691
AluI AGCT 4 cut(s) 143, 637, 661, 691
Alw21I GWGCWC 2 cut(s) 463, 693
Alw26I GTCTC 1 cut(s) 321
Alw44I GTGCAC 1 cut(s) 459
AlwI GGATC 1 cut(s) 1105
AoxI GGCC 1 cut(s) 579
ApaLI GTGCAC 1 cut(s) 459
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 3 cut(s) 713, 737, 869
Asp718I GGTACC 2 cut(s) 134, 800
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 983
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 4 cut(s) 5, 148, 200, 206
AvaII GGWCC 1 cut(s) 983
AxyI CCTNAGG 1 cut(s) 555
BaeGI GKGCMC 1 cut(s) 463
BalI TGGCCA 1 cut(s) 581
BanI GGYRCC 2 cut(s) 134, 800
BanII GRGCYC 1 cut(s) 693
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BauI CACGAG 1 cut(s) 58
Bbv12I GWGCWC 2 cut(s) 463, 693
BbvI GCAGC 1 cut(s) 77
BccI CCATC 7 cut(s) 185, 290, 422, 426, 791, 947, 1031
BcgI CGANNNNNNTGC 2 cut(s) 920, 954
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 1 cut(s) 980
BglII AGATCT 1 cut(s) 834
BisI GCNGC 3 cut(s) 66, 575, 1099
BlsI GCNGC 3 cut(s) 67, 576, 1100
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 983
BmgT120I GGNCC 1 cut(s) 983
BmiI GGNNCC 4 cut(s) 136, 802, 985, 1042
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 239
BoxI GACNNNNGTC 1 cut(s) 705
BpmI CTGGAG 3 cut(s) 204, 413, 659
BpuEI CTTGAG 2 cut(s) 491, 614
BpuMI CCSGG 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 1078
BsaJI CCNNGG 2 cut(s) 282, 582
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 1058, 1088
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 624
Bse1I ACTGG 2 cut(s) 277, 396
Bse21I CCTNAGG 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 282, 582
BseGI GGATG 6 cut(s) 230, 433, 437, 802, 888, 958
BseLI CCNNNNNNNGG 2 cut(s) 101, 624
BseMII CTCAG 4 cut(s) 68, 516, 528, 546
BseNI ACTGG 2 cut(s) 277, 396
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 1052
BshFI GGCC 1 cut(s) 581
BshNI GGYRCC 2 cut(s) 134, 800
BsiEI CGRYCG 1 cut(s) 1052
BsiHKAI GWGCWC 2 cut(s) 463, 693
BsiSI CCGG 2 cut(s) 406, 485
BslI CCNNNNNNNGG 2 cut(s) 101, 624
BsmAI GTCTC 1 cut(s) 321
BsmBI CGTCTC 1 cut(s) 321
BsnI GGCC 1 cut(s) 581
Bsp1286I GDGCHC 2 cut(s) 463, 693
Bsp143I GATC 2 cut(s) 834, 1110
BspACI CCGC 6 cut(s) 261, 418, 574, 1052, 1096, 1099
BspANI GGCC 1 cut(s) 581
BspCNI CTCAG 4 cut(s) 69, 517, 527, 547
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 4 cut(s) 136, 802, 985, 1042
BspPI GGATC 1 cut(s) 1105
BspT107I GGYRCC 2 cut(s) 134, 800
BsrBI CCGCTC 1 cut(s) 574
BsrI ACTGG 2 cut(s) 277, 396
BssECI CCNNGG 2 cut(s) 282, 582
BssMI GATC 2 cut(s) 834, 1110
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 282, 582
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 4 cut(s) 17, 568, 734, 970
Bst6I CTCTTC 2 cut(s) 393, 642
BstAPI GCANNNNNTGC 1 cut(s) 610
BstBAI YACGTR 1 cut(s) 1078
BstC8I GCNNGC 4 cut(s) 310, 579, 615, 1031
BstDEI CTNAG 4 cut(s) 77, 514, 525, 555
BstF5I GGATG 6 cut(s) 230, 433, 437, 802, 888, 958
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 837, 1113
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 834, 1110
BstMCI CGRYCG 1 cut(s) 1052
BstMWI GCNNNNNNNGC 3 cut(s) 610, 634, 1104
BstNSI RCATGY 1 cut(s) 617
BstPAI GACNNNNGTC 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 484
BstSLI GKGCMC 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 834, 1110
BstXI CCANNNNNNTGG 2 cut(s) 792, 814
BstYI RGATCY 2 cut(s) 834, 1110
Bsu36I CCTNAGG 1 cut(s) 555
BsuRI GGCC 1 cut(s) 581
BtsCI GGATG 6 cut(s) 230, 433, 437, 802, 888, 958
BtsIMutI CAGTG 2 cut(s) 564, 975
Cac8I GCNNGC 4 cut(s) 310, 579, 615, 1031
CciI TCATGA 1 cut(s) 727
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 983
CseI GACGC 1 cut(s) 1113
Csp6I GTAC 4 cut(s) 135, 801, 945, 1075
CviAII CATG 5 cut(s) 264, 614, 728, 743, 841
CviQI GTAC 4 cut(s) 135, 801, 945, 1075
DdeI CTNAG 4 cut(s) 77, 514, 525, 555
DpnI GATC 2 cut(s) 836, 1112
DpnII GATC 2 cut(s) 834, 1110
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 2 cut(s) 393, 642
EarI CTCTTC 2 cut(s) 393, 642
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 2 cut(s) 282, 582
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 983
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 330
Eco81I CCTNAGG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 983
EcoRI GAATTC 1 cut(s) 737
EcoT14I CCWWGG 2 cut(s) 282, 582
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 2 cut(s) 282, 582
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 5 cut(s) 267, 617, 731, 746, 844
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FatI CATG 5 cut(s) 263, 613, 727, 742, 840
FauI CCCGC 1 cut(s) 1103
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 3 cut(s) 66, 575, 1099
FokI GGATG 6 cut(s) 217, 440, 444, 809, 895, 965
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 3 cut(s) 66, 575, 1099
FspBI CTAG 1 cut(s) 980
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 66, 575, 1099
GsuI CTGGAG 3 cut(s) 204, 413, 659
HaeIII GGCC 1 cut(s) 581
HapII CCGG 2 cut(s) 406, 485
HgaI GACGC 1 cut(s) 1113
HhaI GCGC 1 cut(s) 65
Hin1II CATG 5 cut(s) 267, 617, 731, 746, 844
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 2 cut(s) 141, 659
HinfI GANTC 4 cut(s) 7, 251, 512, 680
HpaII CCGG 2 cut(s) 406, 485
HphI GGTGA 4 cut(s) 5, 148, 200, 206
Hpy166II GTNNAC 5 cut(s) 92, 270, 461, 562, 826
Hpy188I TCNGA 4 cut(s) 78, 235, 517, 952
Hpy188III TCNNGA 6 cut(s) 183, 554, 710, 728, 866, 877
Hpy8I GTNNAC 5 cut(s) 92, 270, 461, 562, 826
Hpy99I CGWCG 2 cut(s) 942, 945
HpyAV CCTTC 1 cut(s) 764
HpyCH4III ACNGT 4 cut(s) 17, 568, 734, 970
HpyCH4IV ACGT 1 cut(s) 1077
HpyCH4V TGCA 6 cut(s) 4, 364, 461, 491, 541, 613
HpyF10VI GCNNNNNNNGC 3 cut(s) 610, 634, 1104
HpyF3I CTNAG 4 cut(s) 77, 514, 525, 555
HpySE526I ACGT 1 cut(s) 1077
Hsp92II CATG 5 cut(s) 267, 617, 731, 746, 844
HspAI GCGC 1 cut(s) 63
KpnI GGTACC 2 cut(s) 138, 804
Kzo9I GATC 2 cut(s) 834, 1110
LmnI GCTCC 3 cut(s) 286, 634, 696
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 239
MaeI CTAG 1 cut(s) 980
MaeII ACGT 1 cut(s) 1077
MalI GATC 2 cut(s) 836, 1112
MbiI CCGCTC 1 cut(s) 574
MboI GATC 2 cut(s) 834, 1110
MboII GAAGA 7 cut(s) 139, 336, 386, 410, 656, 659, 860
MflI RGATCY 2 cut(s) 834, 1110
MhlI GDGCHC 2 cut(s) 463, 693
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 6 cut(s) 149, 594, 713, 721, 737, 869
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 1 cut(s) 506
Mox20I TGGCCA 1 cut(s) 581
MscI TGGCCA 1 cut(s) 581
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 2 cut(s) 294, 732
Msp20I TGGCCA 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 1054
MspI CCGG 2 cut(s) 406, 485
MspR9I CCNGG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 610, 634, 1104
NciI CCSGG 1 cut(s) 486
NdeII GATC 2 cut(s) 834, 1110
NlaIII CATG 5 cut(s) 267, 617, 731, 746, 844
NlaIV GGNNCC 4 cut(s) 136, 802, 985, 1042
NspI RCATGY 1 cut(s) 617
PaeI GCATGC 1 cut(s) 617
PagI TCATGA 1 cut(s) 727
PfeI GAWTC 3 cut(s) 7, 251, 680
PflFI GACNNNGTC 1 cut(s) 821
PflMI CCANNNNNTGG 1 cut(s) 624
PkrI GCNGC 3 cut(s) 67, 576, 1100
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
Ppu21I YACGTR 1 cut(s) 1078
PpuMI RGGWCCY 1 cut(s) 983
PshAI GACNNNNGTC 1 cut(s) 705
Psp124BI GAGCTC 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 983
PspN4I GGNNCC 4 cut(s) 136, 802, 985, 1042
PspPI GGNCC 1 cut(s) 983
PspPPI RGGWCCY 1 cut(s) 983
PsuI RGATCY 2 cut(s) 834, 1110
PsyI GACNNNGTC 1 cut(s) 821
RsaI GTAC 4 cut(s) 136, 802, 946, 1076
RsaNI GTAC 4 cut(s) 135, 801, 945, 1075
RseI CAYNNNNRTG 2 cut(s) 294, 732
SacI GAGCTC 1 cut(s) 693
SalI GTCGAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 3 cut(s) 66, 575, 1099
Sau3AI GATC 2 cut(s) 834, 1110
Sau96I GGNCC 1 cut(s) 983
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 2 cut(s) 463, 693
SfaNI GCATC 1 cut(s) 239
SinI GGWCC 1 cut(s) 983
SmiMI CAYNNNNRTG 2 cut(s) 294, 732
SmlI CTYRAG 2 cut(s) 506, 629
SmoI CTYRAG 2 cut(s) 506, 629
SphI GCATGC 1 cut(s) 617
Sse9I AATT 6 cut(s) 149, 594, 713, 721, 737, 869
SsiI CCGC 6 cut(s) 261, 418, 574, 1052, 1096, 1099
SspMI CTAG 1 cut(s) 980
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 2 cut(s) 282, 582
TaaI ACNGT 4 cut(s) 17, 568, 734, 970
TaiI ACGT 1 cut(s) 1080
TaqI TCGA 1 cut(s) 269
TasI AATT 6 cut(s) 149, 594, 713, 721, 737, 869
TauI GCSGC 2 cut(s) 577, 1101
TfiI GAWTC 3 cut(s) 7, 251, 680
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 2 cut(s) 571, 975
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 6 cut(s) 111, 857, 867, 899, 920, 1074
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 2 cut(s) 571, 975
Tth111I GACNNNGTC 1 cut(s) 821
Van91I CCANNNNNTGG 1 cut(s) 624
VneI GTGCAC 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 983
XapI RAATTY 3 cut(s) 713, 737, 869
XceI RCATGY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.