FvH4_3g26742

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013644
Physical Location & Seq
Forward (+)
19891891 .. 19899915
8025 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26742.t2

Sequence Viewer

Length: 3033 bp
ATGGCACGCTCTAGATATGATGCATTGGCCACCATGGCTGTAAAGAGATTGAACCAGCTTATGGAGGACATGGGACATGCGACCACTGACTTTAGGGTACTCATCCCTGATTCAACCTCTCAACAATTTGTCTTAGGTCCAGCACTCAAATCTGAACATAGCTTCCCTGACATTTATAGTGAATTTCCCAAGGGAAAAACTGAAGGTTTTCTTATACATAGTAAAATTGCCAAGTTCTATGAATGGTTTCACACTAAGCATCGTTTTTGGCCTGGCAATGATCCTGATTGGGTCTCTTGGTTTGAAAGAGTTCAAGCTCAAAAGAGTTACGTTTGGCATCAAGCTGGGATCTATGACATCCTCCAATTCTCTCAGTTTACCATTCCTCTAAATCGTTCTTTGGTACTGGCTGCACTTTGCTTTTGGTCAACTTCCACCAACTCTTTTCATTTTGGTCATGGTCCTCTTACTATTACTCTCTTGGATCTTAGTGCTCTGGTAGGACTTAGACCATGTGGTGCCCCATTTGATGTTGTTGTTGCTGATTCCATCCCCATCCCGGATGATATTTGTGGCATTCAAATCACCCAATCTCCCAATTTTCCTTCATTTATTAGGGAACATAACAAGATTGAAGGAGCTGTGACAGATGAAGAGCATGTAGCATTTCTTCACTATTGGCTTTGTCGTTACCTTCTCTGTTCTCCATCATTCAAGATCATCAAAGCCAATTTGCCTTTGGCTGTGGCTTTGTCTAGGGGTGAGTCCTATGCTTTAGGACCCGTTGTTCTTGCATACTTGTATAGAGGCATCAATGACTTGCTGCATTCTCAATTAAATACAACGGGTGGACCGTTATGGATTCTTCAACTTTGGCTTCATGCATACTTTCCCGAAATGCGTCCAGATTGCTTTGCCATTCCTAACCTCTCCTGTCATGGACTAAAGTATGTTTCTTTCAAAGAGCCTAAACTTTCATTTCACGATTGTCTATTGTTTATGTACCACTTAGACAGAGAAGAGAATTTCAACTTCAACCCGTATTCAAAGTTAGATGCTTTACCTCCATGGTTAATATTTCCTTGGTCTGAAATGTCTGAAACTGAATTTTCTAAACTCAAGGACATGTGGGCTAGCTTTCTTGTTAGTCGTGATCTTCCTGTAGGTATTTCTCTTCCAAAATTTGGACACAAGACGTTTGGTTTTGAAGTGTATTGCCCAAATCTTTGTGCACGCCAGTTTGGCCTGATTCAAGGCATTCCTACTCCCCCGTTCTTTTCTCTTAGTACCCATTTCCTGGAAAAGATAAGTGTTGGGGGTTTTGAAGAACAACTCCAGTTACTTAAAGTTACCACAGCTCAGTTGTTAACAAAACTTGAACTTTCATCATATTCACCACTACCTAGTACCAGCTCATCCTTCAAAACTTGGTGGACCAAATACTATAAGCAGGTCTTCCCTCATGATTTGCACTATCTTGTAAAGCTTGATGACTTGACACGAAACAGAACGCCTCGCCAAGAGCCTGCAGAGAAAGCAATAAGGAATGCTTTTAGGAAGCGCAAAGTGGAAATCCCCATTCAAGACTCCAGTTCTCACCAACAGCGAGTACCAGAGCCTGGTAGATCAAGAAAAAGGATTAGGTATGTGGATAAGCAAGGAATATGTTCAAGTGTGAAGGACGAAAAAGAAATGGTGCCTGAAATACAATGCCTGCGTGGACAAGGCAGAATTCATAGCAAGACAAGAATGACTATTAAAGCGTGCCATTTTTTGAGAAGTATAAGAAAGGGAAATTATTTATGTCACACCAAGTTCGAGGAAGCTGCTAGGAAGAATAAACAAGCTAATCGCCCATCTAAAAATCAATTCCAGATTGCGCAAGGAAAAAGTTGTGGCAAAAAATCGACACCAATAGAGGAAGCGCATTGTTGTTTGATAAATCTGACAGATTCCCATTCTCAGTTTCTCTCTGAGGCCACTAGAGCTACTTTCCAGAAGAAAACATGTCCTCAGTCAAAGCATCAAAACTCTGATGCTGTATGTGTGGGACTAGTTGTTGAATCTACTGAAGATAACATTAACTTTCAGGTTAATGATCGTCCACTAACAGAGACTATGGATGCTTCAAATGACAGGCTAACTAGTCAAATTTCCTCTCCACCAACAGAAGCAGCTGACCCTCAGACTCCTCAATCCCCATTCCATGCACCATCATCTCATCCTAACCCTTCTGGTTCTCACACCATCCGTGACCCTGAGGTGTCAAAGCCTACAAATTCTATACAAGCGTTGGAATTTCTGGAATGTTATCTACATAAGCATTCATATATTAGTGACTTGGTCAAAGCGGAACAAACTCCAATTCCTGATTCTGAAGTAATTTCTGAAGCCAAGGTCAAGATCCAAAGTATTTCAACACTTCCTCTGGATAAAGTCATGGAAACTGAATGTCTGCAAAGCTTCAAATTATCACTGGAAACATTGGTCAGATCTAATGAACAAACTGGAGTGCAGTTAGCAAACATTGAAGATGTCCTGAGAAAACTTGCTTTTCTGGAGTCCAAGTACCCGTCAGCTAGTGGAATCACAACCGAAGTTAACAAAGCATATGTTCAGAAATTACAGCTAGAACATGAAGTGACAGAATATACTAACCAAATTTCTGAAGCTAAAAAAGAAGAGGCAAAGTTTCTCAATTGTGTAGATATACAGAAGTCGATAGTTGAGGAACTTGAGACAAAATTGGCTGAAGAGAAAGCTAGTTTGATTGCATTGGAGAAGTACCATGCCACCTACAAATGCAAAATAGATGAACTGAATTACAAGTGTGAGCAATCTCAGCAGATGCTTGGTCATCATTGTATCAATGAGAGAATTTGGGTGAACAAAGCTTTGCAAGCGAGAAGTGATTTTAAATCGATTGAAGCAACTTGGGTTCAAATTCAGCATCTTCTTTCCTCAATTGGTGGCAGCAAGCAGGACATGACAGATGTTTTTGATGAACATGTGGAGGTTGTATGTATATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

1011

Amino Acids

115.09

Weight (kDa)

6.97

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 116 - 424 8.6e-45 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26742 FvH4_3g26742
malus_domestica MD11G1175200.v1.1
pyrus_communis pycom11g15030
rosa_chinensis RchiOBHm_Chr5g0049171
rosa_laevigata RLG00000034596
rosa_multiflora Rmu_sc0001677.1_g000029
rosa_roxburghii Rroxscaffold_1G00032560
rosa_rugosa Rorug05G0244500 Rorug05G0244600 Rorug05G0244700 Rorug05G0244800 Rorug05G0244900
rosa_samantha Rh5AG323200 Rh5BG333700 Rh5CG358800 Rh5DG345200
rosa_wichuraiana Rw5G030510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1881
Acc36I ACCTGC 1 cut(s) 1441
AccB1I GGYRCC 2 cut(s) 518, 1696
AccB7I CCANNNNNTGG 4 cut(s) 61, 1184, 1297, 1619
AciI CCGC 1 cut(s) 2351
AclWI GGATC 4 cut(s) 275, 356, 492, 2398
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 6 cut(s) 222, 2091, 2397, 2409, 2688, 2772
AfaI GTAC 8 cut(s) 99, 405, 1004, 1288, 1408, 1611, 2570, 2786
AfiI CCNNNNNNNGG 5 cut(s) 61, 559, 1184, 1297, 1619
AflIII ACRYGT 3 cut(s) 1125, 2006, 3007
AhlI ACTAGT 2 cut(s) 2053, 2144
AjnI CCWGG 3 cut(s) 271, 1296, 1618
AjuI GAANNNNNNNTTGG 2 cut(s) 2356, 2388
AloI GAACNNNNNNTCC 4 cut(s) 147, 179, 771, 803
Alw21I GWGCWC 2 cut(s) 496, 1234
Alw26I GTCTC 3 cut(s) 298, 2108, 2732
Alw44I GTGCAC 1 cut(s) 1230
AlwI GGATC 4 cut(s) 275, 356, 492, 2398
AlwNI CAGNNNCTG 1 cut(s) 1619
AoxI GGCC 4 cut(s) 27, 269, 1243, 1977
ApaLI GTGCAC 1 cut(s) 1230
ApeKI GCWGC 5 cut(s) 410, 823, 1826, 2174, 2973
Asp700I GAANNNNTTC 4 cut(s) 207, 246, 309, 1666
AspLEI GCGC 3 cut(s) 1563, 1882, 1927
AspS9I GGNCC 5 cut(s) 137, 461, 779, 851, 1434
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 5 cut(s) 577, 773, 1386, 1589, 2896
AsuNHI GCTAGC 1 cut(s) 1133
AvaII GGWCC 5 cut(s) 137, 461, 779, 851, 1434
AxyI CCTNAGG 1 cut(s) 2259
BaeGI GKGCMC 2 cut(s) 523, 1234
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 2 cut(s) 518, 1696
BarI GAAGNNNNNNTAC 2 cut(s) 654, 686
BbsI GAAGAC 1 cut(s) 1447
Bbv12I GWGCWC 2 cut(s) 496, 1234
BbvI GCAGC 5 cut(s) 397, 810, 1813, 2186, 2985
BccI CCATC 6 cut(s) 557, 563, 715, 1864, 2221, 2255
BcgI CGANNNNNNTGC 2 cut(s) 1808, 1842
BciT130I CCWGG 3 cut(s) 273, 1298, 1620
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 3 cut(s) 298, 2108, 2732
BcuI ACTAGT 2 cut(s) 2053, 2144
BfmI CTRYAG 2 cut(s) 1161, 1527
BfuAI ACCTGC 1 cut(s) 1441
BglI GCCNNNNNGGC 2 cut(s) 35, 1242
BglII AGATCT 1 cut(s) 2492
BisI GCNGC 5 cut(s) 411, 824, 1827, 2175, 2974
BlsI GCNGC 5 cut(s) 412, 825, 1828, 2176, 2975
Bme1390I CCNGG 4 cut(s) 273, 560, 1298, 1620
Bme18I GGWCC 5 cut(s) 137, 461, 779, 851, 1434
BmgT120I GGNCC 5 cut(s) 137, 461, 779, 851, 1434
BmiI GGNNCC 3 cut(s) 520, 781, 1698
BmrFI CCNGG 4 cut(s) 273, 560, 1298, 1620
BmtI GCTAGC 1 cut(s) 1137
BpiI GAAGAC 1 cut(s) 1447
BpmI CTGGAG 4 cut(s) 1319, 1573, 2529, 2579
BpuEI CTTGAG 2 cut(s) 1103, 2756
BpuMI CCSGG 1 cut(s) 560
Bsa29I ATCGAT 1 cut(s) 2921
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 5 cut(s) 33, 189, 1067, 1082, 2394
BsaXI ACNNNNNCTCC 4 cut(s) 577, 607, 2552, 2582
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 559, 1184, 1297, 1619
Bse1I ACTGG 6 cut(s) 411, 1237, 1336, 1590, 2481, 2512
Bse21I CCTNAGG 1 cut(s) 2259
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 3 cut(s) 273, 1298, 1620
BseCI ATCGAT 1 cut(s) 2921
BseDI CCNNGG 5 cut(s) 33, 189, 1067, 1082, 2394
BseGI GGATG 9 cut(s) 102, 357, 549, 555, 568, 1415, 2128, 2221, 2247
BseLI CCNNNNNNNGG 5 cut(s) 61, 559, 1184, 1297, 1619
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 9 cut(s) 386, 1373, 1965, 1976, 2027, 2198, 2250, 2531, 2855
BseNI ACTGG 6 cut(s) 411, 1237, 1336, 1590, 2481, 2512
BseRI GAGGAG 1 cut(s) 2181
BseSI GKGCMC 2 cut(s) 523, 1234
BseXI GCAGC 5 cut(s) 397, 810, 1813, 2186, 2985
BseYI CCCAGC 1 cut(s) 344
BsgI GTGCAG 2 cut(s) 396, 2534
BshFI GGCC 4 cut(s) 29, 271, 1245, 1979
BshNI GGYRCC 2 cut(s) 518, 1696
BshVI ATCGAT 1 cut(s) 2921
BsiHKAI GWGCWC 2 cut(s) 496, 1234
BsiSI CCGG 1 cut(s) 560
BslFI GGGAC 2 cut(s) 87, 2064
BslI CCNNNNNNNGG 5 cut(s) 61, 559, 1184, 1297, 1619
BsmAI GTCTC 3 cut(s) 298, 2108, 2732
BsmFI GGGAC 2 cut(s) 87, 2064
BsmI GAATGC 5 cut(s) 576, 826, 1257, 1552, 2323
BsnI GGCC 4 cut(s) 29, 271, 1245, 1979
Bso31I GGTCTC 1 cut(s) 298
Bsp1286I GDGCHC 3 cut(s) 496, 523, 1234
Bsp143I GATC 9 cut(s) 280, 348, 484, 717, 1153, 1625, 2098, 2403, 2492
Bsp19I CCATGG 2 cut(s) 33, 1067
BspACI CCGC 1 cut(s) 2351
BspANI GGCC 4 cut(s) 29, 271, 1245, 1979
BspCNI CTCAG 9 cut(s) 385, 1372, 1966, 1975, 2026, 2197, 2251, 2532, 2854
BspDI ATCGAT 1 cut(s) 2921
BspHI TCATGA 1 cut(s) 1462
BspLI GGNNCC 3 cut(s) 520, 781, 1698
BspMAI CTGCAG 1 cut(s) 1531
BspMI ACCTGC 1 cut(s) 1441
BspOI GCTAGC 1 cut(s) 1137
BspPI GGATC 4 cut(s) 275, 356, 492, 2398
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 2 cut(s) 518, 1696
BspTNI GGTCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 6 cut(s) 411, 1237, 1336, 1590, 2481, 2512
BssECI CCNNGG 5 cut(s) 33, 189, 1067, 1082, 2394
BssMI GATC 9 cut(s) 280, 348, 484, 717, 1153, 1625, 2098, 2403, 2492
BssT1I CCWWGG 5 cut(s) 33, 189, 1067, 1082, 2394
Bst2UI CCWGG 3 cut(s) 273, 1298, 1620
Bst4CI ACNGT 1 cut(s) 855
Bst6I CTCTTC 5 cut(s) 648, 1014, 1179, 2676, 2748
BstC8I GCNNGC 8 cut(s) 7, 1135, 1234, 1527, 1715, 1765, 2901, 2978
BstDSI CCRYGG 2 cut(s) 33, 1067
BstF5I GGATG 9 cut(s) 102, 357, 549, 555, 568, 1415, 2128, 2221, 2247
BstHHI GCGC 3 cut(s) 1563, 1882, 1927
BstKTI GATC 9 cut(s) 283, 351, 487, 720, 1156, 1628, 2101, 2406, 2495
BstMAI GTCTC 3 cut(s) 298, 2108, 2732
BstMBI GATC 9 cut(s) 280, 348, 484, 717, 1153, 1625, 2098, 2403, 2492
BstMWI GCNNNNNNNGC 6 cut(s) 35, 1242, 1535, 1985, 2842, 2900
BstNI CCWGG 3 cut(s) 273, 1298, 1620
BstNSI RCATGY 5 cut(s) 80, 662, 1129, 2010, 3011
BstSCI CCNGG 4 cut(s) 271, 558, 1296, 1618
BstSFI CTRYAG 2 cut(s) 1161, 1527
BstSLI GKGCMC 2 cut(s) 523, 1234
BstV1I GCAGC 5 cut(s) 397, 810, 1813, 2186, 2985
BstV2I GAAGAC 1 cut(s) 1447
BstX2I RGATCY 4 cut(s) 348, 484, 2403, 2492
BstYI RGATCY 4 cut(s) 348, 484, 2403, 2492
Bsu15I ATCGAT 1 cut(s) 2921
Bsu36I CCTNAGG 1 cut(s) 2259
BsuRI GGCC 4 cut(s) 29, 271, 1245, 1979
BsuTUI ATCGAT 1 cut(s) 2921
BtgI CCRYGG 2 cut(s) 33, 1067
BtsCI GGATG 9 cut(s) 102, 357, 549, 555, 568, 1415, 2128, 2221, 2247
BtsIMutI CAGTG 2 cut(s) 84, 2474
BveI ACCTGC 1 cut(s) 1441
Cac8I GCNNGC 8 cut(s) 7, 1135, 1234, 1527, 1715, 1765, 2901, 2978
CaiI CAGNNNCTG 1 cut(s) 1619
CciI TCATGA 1 cut(s) 1462
CfoI GCGC 3 cut(s) 1563, 1882, 1927
Cfr13I GGNCC 5 cut(s) 137, 461, 779, 851, 1434
ClaI ATCGAT 1 cut(s) 2921
CseI GACGC 1 cut(s) 890
Csp6I GTAC 8 cut(s) 98, 404, 1003, 1287, 1407, 1610, 2569, 2785
CviQI GTAC 8 cut(s) 98, 404, 1003, 1287, 1407, 1610, 2569, 2785
DpnI GATC 9 cut(s) 282, 350, 486, 719, 1155, 1627, 2100, 2405, 2494
DpnII GATC 9 cut(s) 280, 348, 484, 717, 1153, 1625, 2098, 2403, 2492
DraI TTTAAA 1 cut(s) 2917
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 5 cut(s) 648, 1014, 1179, 2676, 2748
EarI CTCTTC 5 cut(s) 648, 1014, 1179, 2676, 2748
Eco130I CCWWGG 5 cut(s) 33, 189, 1067, 1082, 2394
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 5 cut(s) 137, 461, 779, 851, 1434
Eco57I CTGAAG 6 cut(s) 222, 2091, 2397, 2409, 2688, 2772
Eco81I CCTNAGG 1 cut(s) 2259
EcoO109I RGGNCCY 1 cut(s) 779
EcoRI GAATTC 1 cut(s) 1731
EcoRII CCWGG 3 cut(s) 271, 1296, 1618
EcoT14I CCWWGG 5 cut(s) 33, 189, 1067, 1082, 2394
EcoT22I ATGCAT 2 cut(s) 25, 886
ErhI CCWWGG 5 cut(s) 33, 189, 1067, 1082, 2394
FalI AAGNNNNNCTT 6 cut(s) 195, 227, 1439, 1471, 1534, 1566
FaqI GGGAC 2 cut(s) 87, 2064
FauNDI CATATG 1 cut(s) 2611
Fnu4HI GCNGC 5 cut(s) 411, 824, 1827, 2175, 2974
FokI GGATG 9 cut(s) 89, 344, 536, 542, 575, 1402, 2135, 2208, 2234
Fsp4HI GCNGC 5 cut(s) 411, 824, 1827, 2175, 2974
FspI TGCGCA 1 cut(s) 1881
GlaI GCGC 3 cut(s) 1562, 1881, 1926
GluI GCNGC 5 cut(s) 411, 824, 1827, 2175, 2974
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 4 cut(s) 1319, 1573, 2529, 2579
HaeIII GGCC 4 cut(s) 29, 271, 1245, 1979
HapII CCGG 1 cut(s) 560
HgaI GACGC 1 cut(s) 890
HhaI GCGC 3 cut(s) 1563, 1882, 1927
Hin6I GCGC 3 cut(s) 1561, 1880, 1925
HinP1I GCGC 3 cut(s) 1561, 1880, 1925
HincII GTYRAC 3 cut(s) 429, 1368, 2602
HindII GTYRAC 3 cut(s) 429, 1368, 2602
HindIII AAGCTT 3 cut(s) 1484, 2461, 2892
HpaI GTTAAC 2 cut(s) 1368, 2602
HpaII CCGG 1 cut(s) 560
HphI GGTGA 5 cut(s) 577, 773, 1386, 1589, 2896
HpyAV CCTTC 7 cut(s) 197, 615, 629, 704, 1429, 1672, 2241
HpyCH4III ACNGT 1 cut(s) 855
HpyCH4IV ACGT 2 cut(s) 330, 1196
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 1242, 1535, 1985, 2842, 2900
HpySE526I ACGT 2 cut(s) 330, 1196
HspAI GCGC 3 cut(s) 1561, 1880, 1925
KspAI GTTAAC 2 cut(s) 1368, 2602
Kzo9I GATC 9 cut(s) 280, 348, 484, 717, 1153, 1625, 2098, 2403, 2492
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 638
Lsp1109I GCAGC 5 cut(s) 397, 810, 1813, 2186, 2985
MaeII ACGT 2 cut(s) 330, 1196
MaeIII GTNAC 9 cut(s) 326, 643, 689, 1338, 1348, 1805, 2252, 2336, 2641
MalI GATC 9 cut(s) 282, 350, 486, 719, 1155, 1627, 2100, 2405, 2494
MboI GATC 9 cut(s) 280, 348, 484, 717, 1153, 1625, 2098, 2403, 2492
MfeI CAATTG 2 cut(s) 2698, 2964
MflI RGATCY 4 cut(s) 348, 484, 2403, 2492
MhlI GDGCHC 3 cut(s) 496, 523, 1234
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 4 cut(s) 773, 1580, 2182, 2570
MmeI TCCRAC 1 cut(s) 2274
Mox20I TGGCCA 1 cut(s) 29
Mph1103I ATGCAT 2 cut(s) 25, 886
MroXI GAANNNNTTC 4 cut(s) 207, 246, 309, 1666
MscI TGGCCA 1 cut(s) 29
MseI TTAA 9 cut(s) 836, 1073, 1344, 1367, 1758, 2082, 2094, 2601, 2916
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 2177
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 4 cut(s) 273, 560, 1298, 1620
MunI CAATTG 2 cut(s) 2698, 2964
Mva1269I GAATGC 5 cut(s) 576, 826, 1257, 1552, 2323
MvaI CCWGG 3 cut(s) 273, 1298, 1620
MwoI GCNNNNNNNGC 6 cut(s) 35, 1242, 1535, 1985, 2842, 2900
NciI CCSGG 1 cut(s) 560
NcoI CCATGG 2 cut(s) 33, 1067
NdeI CATATG 1 cut(s) 2611
NdeII GATC 9 cut(s) 280, 348, 484, 717, 1153, 1625, 2098, 2403, 2492
NheI GCTAGC 1 cut(s) 1133
NlaIV GGNNCC 3 cut(s) 520, 781, 1698
NmuCI GTSAC 5 cut(s) 643, 1805, 2252, 2336, 2641
NsbI TGCGCA 1 cut(s) 1881
NsiI ATGCAT 2 cut(s) 25, 886
NspI RCATGY 5 cut(s) 80, 662, 1129, 2010, 3011
PagI TCATGA 1 cut(s) 1462
PciI ACATGT 3 cut(s) 1125, 2006, 3007
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 851
PctI GAATGC 5 cut(s) 576, 826, 1257, 1552, 2323
PdmI GAANNNNTTC 4 cut(s) 207, 246, 309, 1666
PfeI GAWTC 8 cut(s) 110, 545, 862, 1249, 1952, 2063, 2372, 2586
PflFI GACNNNGTC 1 cut(s) 2342
PflMI CCANNNNNTGG 4 cut(s) 61, 1184, 1297, 1619
PfoI TCCNGGA 2 cut(s) 558, 1296
PkrI GCNGC 5 cut(s) 412, 825, 1828, 2176, 2975
PleI GAGTC 4 cut(s) 772, 1580, 2182, 2569
PpsI GAGTC 4 cut(s) 772, 1580, 2182, 2569
PpuMI RGGWCCY 1 cut(s) 779
PscI ACATGT 3 cut(s) 1125, 2006, 3007
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 3 cut(s) 271, 1296, 1618
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 3 cut(s) 271, 1296, 1618
PspN4I GGNNCC 3 cut(s) 520, 781, 1698
PspPI GGNCC 5 cut(s) 137, 461, 779, 851, 1434
PspPPI RGGWCCY 1 cut(s) 779
PstI CTGCAG 1 cut(s) 1531
PstNI CAGNNNCTG 1 cut(s) 1619
PsuI RGATCY 4 cut(s) 348, 484, 2403, 2492
PsyI GACNNNGTC 1 cut(s) 2342
PvuII CAGCTG 1 cut(s) 2177
RsaI GTAC 8 cut(s) 99, 405, 1004, 1288, 1408, 1611, 2570, 2786
RsaNI GTAC 8 cut(s) 98, 404, 1003, 1287, 1407, 1610, 2569, 2785
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 9 cut(s) 836, 1073, 1344, 1367, 1758, 2082, 2094, 2601, 2916
SatI GCNGC 5 cut(s) 411, 824, 1827, 2175, 2974
Sau3AI GATC 9 cut(s) 280, 348, 484, 717, 1153, 1625, 2098, 2403, 2492
Sau96I GGNCC 5 cut(s) 137, 461, 779, 851, 1434
SchI GAGTC 4 cut(s) 773, 1580, 2182, 2570
ScrFI CCNGG 4 cut(s) 273, 560, 1298, 1620
SduI GDGCHC 3 cut(s) 496, 523, 1234
SfcI CTRYAG 2 cut(s) 1161, 1527
SinI GGWCC 5 cut(s) 137, 461, 779, 851, 1434
SmlI CTYRAG 2 cut(s) 1118, 2735
SmoI CTYRAG 2 cut(s) 1118, 2735
SpeI ACTAGT 2 cut(s) 2053, 2144
SsiI CCGC 1 cut(s) 2351
SspI AATATT 1 cut(s) 1077
StyD4I CCNGG 4 cut(s) 271, 558, 1296, 1618
StyI CCWWGG 5 cut(s) 33, 189, 1067, 1082, 2394
TaaI ACNGT 1 cut(s) 855
TaiI ACGT 2 cut(s) 333, 1199
TaqI TCGA 4 cut(s) 1818, 1907, 2720, 2921
TfiI GAWTC 8 cut(s) 110, 545, 862, 1249, 1952, 2063, 2372, 2586
Tru1I TTAA 9 cut(s) 836, 1073, 1344, 1367, 1758, 2082, 2094, 2601, 2916
Tru9I TTAA 9 cut(s) 836, 1073, 1344, 1367, 1758, 2082, 2094, 2601, 2916
TscAI CASTG 2 cut(s) 91, 2481
TseFI GTSAC 5 cut(s) 643, 1805, 2252, 2336, 2641
TseI GCWGC 5 cut(s) 410, 823, 1826, 2174, 2973
Tsp45I GTSAC 5 cut(s) 643, 1805, 2252, 2336, 2641
TspGWI ACGGA 1 cut(s) 2240
TspRI CASTG 2 cut(s) 91, 2481
Tth111I GACNNNGTC 1 cut(s) 2342
Van91I CCANNNNNTGG 4 cut(s) 61, 1184, 1297, 1619
VneI GTGCAC 1 cut(s) 1230
VpaK11BI GGWCC 5 cut(s) 137, 461, 779, 851, 1434
XbaI TCTAGA 1 cut(s) 11
XceI RCATGY 5 cut(s) 80, 662, 1129, 2010, 3011
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XmnI GAANNNNTTC 4 cut(s) 207, 246, 309, 1666
Zsp2I ATGCAT 2 cut(s) 25, 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.