MD11G1175200.v1.1

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013644
Physical Location & Seq
Reverse (-)
20764948 .. 20766095
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1175200.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGCAACACATTGCTGAAGTAACTGAACATAACAGTATTCCTAAGCTGGAAGATGTGCCACCTACTGAGGTTGCGGATGCTTCAAATGCGAAGCTTCCTAGTCAAATTTCATCTCCTCCCAGTGAAGAATCAGCTGAATCTCGGCCTCCTCAAGTAGCTCAATCCCCGCTTCAAGCAGTGTCATCGCATCCAAATACTATAAGTAAAGAAAGTGGTTCCTACCGCTCCCATTTTCATGACAATCTTGATGTCAAGATGTCAAAGCCCCTGCATTCTGCCCGAGCTTTGGACTTTCTGGATACTTATCTCCATCATCATCCAGATGCTTGTCTCTTGGCTATAACTGAAGATGCTCCCATTCCTGATTCCTATGAGATTTCTCAAGCCAAGGCCAAGATCCAAAGTATCACCGCACTCTCTATGGATGAAGTCATGGAAATTGAATGTTTACGGAACCTGAAGTTGTCATTGGAAATCTTGCTAAACGCCTATGACCGAACTGGAGTTGAGTATGCGAACATTGAAAATGTCCAGGTGAAGCTTGCTGCTGTGAAGTCCAAGTACCACAAGGCCAATGGAACCGTAGCTGAAGTGAGAAAAAAATTTAATCAGAAGATAGCACTGGAACAAGAAGTAGAAGTCTATAATCGCCTTTTTTCAAAAGCTCAAGCGGATGAAGAAAAGTTGCAAGCTTGCATCATTGTACAAAAATCAAGGGTTGAAGAGCTGGAGAAAAAATTGGTTGAAGAAAAAGGTAATTTGGAGAAATTGGAGGAGTTAAATTCCAACCACAAAACCGAAATGGATGAGTTCCGTTGCAAGCTTGAGCACAGCCAGAAGCTGCTTCTGGATCATTGTATGCATGATAAAACTTGGGTGAAGAAAGCAATGCAGGCCAAAAACGATTTTAAATCGATGGAAGCAACTTGGGTTCAGATCCAAAAATTGCTTTCCTTGATTAGTGTCCAGAAAACGGGGGAAGTACAGCGATCATTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

334

Amino Acids

37.7

Weight (kDa)

5.9

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26742 FvH4_3g26742
malus_domestica MD11G1175200.v1.1
pyrus_communis pycom11g15030
rosa_chinensis RchiOBHm_Chr5g0049171
rosa_laevigata RLG00000034596
rosa_multiflora Rmu_sc0001677.1_g000029
rosa_roxburghii Rroxscaffold_1G00032560
rosa_rugosa Rorug05G0244500 Rorug05G0244600 Rorug05G0244700 Rorug05G0244800 Rorug05G0244900
rosa_samantha Rh5AG323200 Rh5BG333700 Rh5CG358800 Rh5DG345200
rosa_wichuraiana Rw5G030510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 225
AciI CCGC 5 cut(s) 74, 167, 223, 411, 671
AclWI GGATC 3 cut(s) 391, 858, 931
AcsI RAATTY 3 cut(s) 105, 602, 781
AcuI CTGAAG 4 cut(s) 36, 366, 479, 609
AfaI GTAC 3 cut(s) 563, 705, 984
AfiI CCNNNNNNNGG 2 cut(s) 286, 973
AgsI TTSAA 7 cut(s) 84, 173, 443, 524, 660, 722, 746
AjnI CCWGG 1 cut(s) 531
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
Alw21I GWGCWC 1 cut(s) 831
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 3 cut(s) 391, 858, 931
AlwNI CAGNNNCTG 1 cut(s) 841
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 4 cut(s) 143, 390, 570, 894
ApeKI GCWGC 2 cut(s) 545, 841
ApoI RAATTY 3 cut(s) 105, 602, 781
AsuHPI GGTGA 3 cut(s) 400, 547, 889
AvaI CYCGRG 1 cut(s) 279
BarI GAAGNNNNNNTAC 2 cut(s) 545, 577
Bbv12I GWGCWC 1 cut(s) 831
BbvI GCAGC 2 cut(s) 532, 828
BccI CCATC 2 cut(s) 318, 910
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciT130I CCWGG 1 cut(s) 533
BciVI GTATCC 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 99
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 2 cut(s) 546, 842
BlsI GCNGC 2 cut(s) 547, 843
Bme1390I CCNGG 1 cut(s) 533
BmeT110I CYCGRG 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 217, 455, 580
BmrFI CCNGG 1 cut(s) 533
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 5 cut(s) 67, 196, 313, 340, 705
BmuI ACTGGG 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 522, 749
Bpu10I CCTNAGC 1 cut(s) 42
BpuEI CTTGAG 4 cut(s) 135, 366, 651, 845
Bsa29I ATCGAT 1 cut(s) 914
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 973
Bse1I ACTGG 3 cut(s) 120, 505, 627
Bse3DI GCAATG 3 cut(s) 9, 894, 992
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 533
BseCI ATCGAT 1 cut(s) 914
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 6 cut(s) 82, 187, 316, 430, 679, 811
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 286, 973
BseMI GCAATG 3 cut(s) 9, 894, 992
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 3 cut(s) 120, 505, 627
BseRI GAGGAG 3 cut(s) 105, 138, 788
BseXI GCAGC 2 cut(s) 532, 828
BshFI GGCC 4 cut(s) 145, 392, 572, 896
BshVI ATCGAT 1 cut(s) 914
BsiHKAI GWGCWC 1 cut(s) 831
BsiHKCI CYCGRG 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 286, 973
BsmAI GTCTC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 4 cut(s) 145, 392, 572, 896
BsoBI CYCGRG 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 831
Bsp1407I TGTACA 1 cut(s) 703
Bsp143I GATC 4 cut(s) 396, 850, 936, 989
BspACI CCGC 5 cut(s) 74, 167, 223, 411, 671
BspANI GGCC 4 cut(s) 145, 392, 572, 896
BspCNI CTCAG 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 914
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 217, 455, 580
BspPI GGATC 3 cut(s) 391, 858, 931
BspQI GCTCTTC 1 cut(s) 717
BsrBI CCGCTC 1 cut(s) 225
BsrDI GCAATG 3 cut(s) 9, 894, 992
BsrGI TGTACA 1 cut(s) 703
BsrI ACTGG 3 cut(s) 120, 505, 627
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 4 cut(s) 396, 850, 936, 989
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 2 cut(s) 35, 583
Bst6I CTCTTC 1 cut(s) 717
BstAUI TGTACA 1 cut(s) 703
BstC8I GCNNGC 5 cut(s) 543, 690, 694, 821, 894
BstDEI CTNAG 2 cut(s) 42, 66
BstF5I GGATG 6 cut(s) 82, 187, 316, 430, 679, 811
BstKTI GATC 4 cut(s) 399, 853, 939, 992
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 396, 850, 936, 989
BstMWI GCNNNNNNNGC 3 cut(s) 86, 893, 994
BstNI CCWGG 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 532, 828
BstX2I RGATCY 2 cut(s) 396, 936
BstYI RGATCY 2 cut(s) 396, 936
Bsu15I ATCGAT 1 cut(s) 914
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 4 cut(s) 145, 392, 572, 896
BsuTUI ATCGAT 1 cut(s) 914
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 6 cut(s) 82, 187, 316, 430, 679, 811
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 3 cut(s) 127, 183, 620
Cac8I GCNNGC 5 cut(s) 543, 690, 694, 821, 894
CaiI CAGNNNCTG 1 cut(s) 841
CciI TCATGA 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 914
Csp6I GTAC 3 cut(s) 562, 704, 983
CviAII CATG 3 cut(s) 236, 433, 863
CviQI GTAC 3 cut(s) 562, 704, 983
DdeI CTNAG 2 cut(s) 42, 66
DpnI GATC 4 cut(s) 398, 852, 938, 991
DpnII GATC 4 cut(s) 396, 850, 936, 989
DraI TTTAAA 1 cut(s) 910
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Eco130I CCWWGG 1 cut(s) 387
Eco57I CTGAAG 4 cut(s) 36, 366, 479, 609
Eco88I CYCGRG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 387
EcoT22I ATGCAT 1 cut(s) 864
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 3 cut(s) 239, 436, 866
FatI CATG 3 cut(s) 235, 432, 862
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 546, 842
FokI GGATG 6 cut(s) 89, 174, 303, 437, 686, 818
Fsp4HI GCNGC 2 cut(s) 546, 842
FspBI CTAG 1 cut(s) 99
GluI GCNGC 2 cut(s) 546, 842
GsuI CTGGAG 2 cut(s) 522, 749
HaeIII GGCC 4 cut(s) 145, 392, 572, 896
Hin1II CATG 3 cut(s) 239, 436, 866
HindIII AAGCTT 4 cut(s) 92, 539, 690, 821
HinfI GANTC 3 cut(s) 128, 137, 365
HphI GGTGA 3 cut(s) 400, 547, 889
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 2 cut(s) 612, 936
Hpy188III TCNNGA 8 cut(s) 236, 245, 253, 296, 320, 362, 848, 967
Hpy8I GTNNAC 1 cut(s) 449
HpyCH4III ACNGT 2 cut(s) 35, 583
HpyCH4V TGCA 8 cut(s) 4, 271, 688, 696, 819, 862, 892, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 893, 994
HpyF3I CTNAG 2 cut(s) 42, 66
Hsp92II CATG 3 cut(s) 239, 436, 866
Kzo9I GATC 4 cut(s) 396, 850, 936, 989
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 2 cut(s) 230, 358
Lsp1109I GCAGC 2 cut(s) 532, 828
LweI GCATC 5 cut(s) 67, 196, 313, 340, 705
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 19
MalI GATC 4 cut(s) 398, 852, 938, 991
MbiI CCGCTC 1 cut(s) 225
MboI GATC 4 cut(s) 396, 850, 936, 989
MboII GAAGA 8 cut(s) 62, 137, 359, 625, 689, 734, 758, 892
MflI RGATCY 2 cut(s) 396, 936
MhlI GDGCHC 1 cut(s) 831
MluCI AATT 8 cut(s) 105, 438, 602, 737, 757, 767, 781, 944
MmeI TCCRAC 1 cut(s) 810
MnlI CCTC 5 cut(s) 61, 126, 156, 159, 766
Mph1103I ATGCAT 1 cut(s) 864
MseI TTAA 3 cut(s) 606, 779, 909
MslI CAYNNNNRTG 2 cut(s) 234, 321
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 533
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 533
MwoI GCNNNNNNNGC 3 cut(s) 86, 893, 994
NdeII GATC 4 cut(s) 396, 850, 936, 989
NlaIII CATG 3 cut(s) 239, 436, 866
NlaIV GGNNCC 3 cut(s) 217, 455, 580
NmeAIII GCCGAG 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 864
PagI TCATGA 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 717
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 3 cut(s) 128, 137, 365
PkrI GCNGC 2 cut(s) 547, 843
Psp6I CCWGG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 3 cut(s) 217, 455, 580
PstNI CAGNNNCTG 1 cut(s) 841
PsuI RGATCY 2 cut(s) 396, 936
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 3 cut(s) 563, 705, 984
RsaNI GTAC 3 cut(s) 562, 704, 983
RseI CAYNNNNRTG 2 cut(s) 234, 321
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 606, 779, 909
SatI GCNGC 2 cut(s) 546, 842
Sau3AI GATC 4 cut(s) 396, 850, 936, 989
ScrFI CCNGG 1 cut(s) 533
SduI GDGCHC 1 cut(s) 831
SfaNI GCATC 5 cut(s) 67, 196, 313, 340, 705
SmiMI CAYNNNNRTG 2 cut(s) 234, 321
SmlI CTYRAG 4 cut(s) 150, 381, 666, 824
SmoI CTYRAG 4 cut(s) 150, 381, 666, 824
Sse9I AATT 8 cut(s) 105, 438, 602, 737, 757, 767, 781, 944
SsiI CCGC 5 cut(s) 74, 167, 223, 411, 671
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 531
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 35, 583
TaqI TCGA 1 cut(s) 914
TaqII GACCGA 1 cut(s) 510
TasI AATT 8 cut(s) 105, 438, 602, 737, 757, 767, 781, 944
TatI WGTACW 2 cut(s) 703, 982
TfiI GAWTC 3 cut(s) 128, 137, 365
Tru1I TTAA 3 cut(s) 606, 779, 909
Tru9I TTAA 3 cut(s) 606, 779, 909
TscAI CASTG 3 cut(s) 127, 183, 627
TseI GCWGC 2 cut(s) 545, 841
TspDTI ATGAA 4 cut(s) 99, 224, 441, 690
TspGWI ACGGA 2 cut(s) 466, 803
TspRI CASTG 3 cut(s) 127, 183, 627
XapI RAATTY 3 cut(s) 105, 602, 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 572
XspI CTAG 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.