Rorug05G0244800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013644
Physical Location & Seq
Reverse (-)
26365329 .. 26366418
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0244800.1

Sequence Viewer

Length: 702 bp
ATGCAAAGCCGAGTGCAGAACTTAGTTCCCGATCCCAACCTCCAAATCAATGCTCGCTTCATTGGTCTCCGCCCTGAAGGCCGAAGCAGGGACTATACCTGGATTCAAGCCCTTGGACTCCTCTTCGATTCGAACAGCTTCACACTCGAGGCCACCCCATCAGCAACATGGGACGATGAGATTGACCACTTGAAGTTCTCTTACAATGATGAAGAGCTAATCATCCCAGAATCCCATCTCTCTGTTTGGGAATCTAAGGAAACTTCTATTAGAGTGGAGAGGACTTCGAGCAAGAACAGTGTCTTAGTCACTCTCCCAGAAGTTGCTGAAATTTCAGTCAATGTGGTACCTGTGACAAAGGAAGATGATAAGATCCACAATTATCAAATACCATCGGATGACTGTTTTGCTCACCTGGAAGTACAGTTCAGATTCTACGGTCTGTCATCAAATGTTGAAGGAGTACTTGGAAGGACTTACCAGCCAGATTTCAAGAACCCGGCAAAGGCTGGAGTAGCCATGCCGGTAGTTGGAGGTGAATACAAGTACAAAACAACATCACTTGTCTCTGCGGATTGTTTTGCTTGTGTGTTCACTCAGGCCGGGATGTTGGATCAGACGGATTCAAGAGTGATCGATTACGGAAAGCTAGACTGCACCGGTAACACCTTCAGTGGGAATGGAATAGTTTGCAGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

233

Amino Acids

26.04

Weight (kDa)

4.88

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 142 - 198 6.3e-26 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26742 FvH4_3g26742
malus_domestica MD11G1175200.v1.1
pyrus_communis pycom11g15030
rosa_chinensis RchiOBHm_Chr5g0049171
rosa_laevigata RLG00000034596
rosa_multiflora Rmu_sc0001677.1_g000029
rosa_roxburghii Rroxscaffold_1G00032560
rosa_rugosa Rorug05G0244500 Rorug05G0244600 Rorug05G0244700 Rorug05G0244800 Rorug05G0244900
rosa_samantha Rh5AG323200 Rh5BG333700 Rh5CG358800 Rh5DG345200
rosa_wichuraiana Rw5G030510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 346
AciI CCGC 2 cut(s) 70, 572
AclWI GGATC 3 cut(s) 26, 367, 621
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 2 cut(s) 96, 655
AfaI GTAC 4 cut(s) 348, 423, 465, 548
AfiI CCNNNNNNNGG 4 cut(s) 88, 505, 530, 675
AgeI ACCGGT 1 cut(s) 659
AgsI TTSAA 5 cut(s) 107, 193, 458, 493, 627
AjnI CCWGG 2 cut(s) 98, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 3 cut(s) 138, 217, 649
AluI AGCT 3 cut(s) 138, 217, 649
Alw26I GTCTC 2 cut(s) 71, 571
AlwI GGATC 3 cut(s) 26, 367, 621
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 3 cut(s) 79, 150, 600
ApoI RAATTY 1 cut(s) 330
AsiGI ACCGGT 1 cut(s) 659
Asp700I GAANNNNTTC 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 346
AsuC2I CCSGG 2 cut(s) 500, 604
AsuHPI GGTGA 2 cut(s) 404, 548
AsuII TTCGAA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 146
BanI GGYRCC 1 cut(s) 346
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BccI CCATC 3 cut(s) 166, 243, 400
BciT130I CCWGG 2 cut(s) 100, 416
BcnI CCSGG 2 cut(s) 500, 604
BcoDI GTCTC 2 cut(s) 71, 571
BfaI CTAG 1 cut(s) 650
BglI GCCNNNNNGGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 4 cut(s) 100, 416, 500, 604
BmeT110I CYCGRG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 4 cut(s) 100, 416, 500, 604
BpmI CTGGAG 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 131
BpuMI CCSGG 2 cut(s) 500, 604
Bsa29I ATCGAT 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 505, 530, 675
Bse118I RCCGGY 2 cut(s) 523, 659
BseBI CCWGG 2 cut(s) 100, 416
BseCI ATCGAT 1 cut(s) 636
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 3 cut(s) 222, 403, 612
BseLI CCNNNNNNNGG 4 cut(s) 88, 505, 530, 675
BseMII CTCAG 1 cut(s) 611
BseRI GAGGAG 1 cut(s) 110
BsgI GTGCAG 2 cut(s) 35, 640
BshFI GGCC 3 cut(s) 81, 152, 602
BshNI GGYRCC 1 cut(s) 346
BshTI ACCGGT 1 cut(s) 659
BshVI ATCGAT 1 cut(s) 636
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 4 cut(s) 500, 524, 603, 660
BslFI GGGAC 2 cut(s) 104, 185
BslI CCNNNNNNNGG 4 cut(s) 88, 505, 530, 675
BsmAI GTCTC 2 cut(s) 71, 571
BsmFI GGGAC 2 cut(s) 104, 185
BsnI GGCC 3 cut(s) 81, 152, 602
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 131
Bsp143I GATC 4 cut(s) 31, 372, 613, 633
BspACI CCGC 2 cut(s) 70, 572
BspANI GGCC 3 cut(s) 81, 152, 602
BspCNI CTCAG 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 3 cut(s) 26, 367, 621
BspQI GCTCTTC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 523, 659
BssAI RCCGGY 2 cut(s) 523, 659
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 4 cut(s) 31, 372, 613, 633
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 2 cut(s) 100, 416
Bst4CI ACNGT 4 cut(s) 299, 404, 426, 440
Bst6I CTCTTC 2 cut(s) 128, 207
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 4 cut(s) 22, 255, 304, 597
BstF5I GGATG 3 cut(s) 222, 403, 612
BstKTI GATC 4 cut(s) 34, 375, 616, 636
BstMAI GTCTC 2 cut(s) 71, 571
BstMBI GATC 4 cut(s) 31, 372, 613, 633
BstMWI GCNNNNNNNGC 2 cut(s) 78, 515
BstNI CCWGG 2 cut(s) 100, 416
BstSCI CCNGG 4 cut(s) 98, 414, 498, 602
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
Bsu15I ATCGAT 1 cut(s) 636
BsuRI GGCC 3 cut(s) 81, 152, 602
BsuTUI ATCGAT 1 cut(s) 636
BtsCI GGATG 3 cut(s) 222, 403, 612
BtsIMutI CAGTG 2 cut(s) 304, 679
Cac8I GCNNGC 1 cut(s) 55
Cfr10I RCCGGY 2 cut(s) 523, 659
ClaI ATCGAT 1 cut(s) 636
Csp6I GTAC 4 cut(s) 347, 422, 464, 547
CspAI ACCGGT 1 cut(s) 659
CviAII CATG 2 cut(s) 168, 520
CviQI GTAC 4 cut(s) 347, 422, 464, 547
DdeI CTNAG 4 cut(s) 22, 255, 304, 597
DpnI GATC 4 cut(s) 33, 374, 615, 635
DpnII GATC 4 cut(s) 31, 372, 613, 633
Eam1104I CTCTTC 2 cut(s) 128, 207
EarI CTCTTC 2 cut(s) 128, 207
EciI GGCGGA 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 71
Eco57I CTGAAG 2 cut(s) 96, 655
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 98, 414
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 2 cut(s) 171, 523
FaiI YATR 3 cut(s) 96, 169, 521
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 2 cut(s) 104, 185
FatI CATG 2 cut(s) 167, 519
FokI GGATG 3 cut(s) 209, 410, 619
FspBI CTAG 1 cut(s) 650
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 3 cut(s) 81, 152, 602
HapII CCGG 4 cut(s) 500, 524, 603, 660
Hin1II CATG 2 cut(s) 171, 523
HinfI GANTC 7 cut(s) 103, 117, 128, 230, 251, 432, 623
HpaII CCGG 4 cut(s) 500, 524, 603, 660
HphI GGTGA 2 cut(s) 404, 548
Hpy166II GTNNAC 1 cut(s) 594
Hpy188I TCNGA 3 cut(s) 397, 431, 618
Hpy188III TCNNGA 3 cut(s) 29, 493, 627
Hpy8I GTNNAC 1 cut(s) 594
HpyAV CCTTC 4 cut(s) 71, 452, 465, 679
HpyCH4III ACNGT 4 cut(s) 299, 404, 426, 440
HpyCH4V TGCA 4 cut(s) 4, 16, 657, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 515
HpyF3I CTNAG 4 cut(s) 22, 255, 304, 597
Hsp92II CATG 2 cut(s) 171, 523
KpnI GGTACC 1 cut(s) 350
Kzo9I GATC 4 cut(s) 31, 372, 613, 633
LguI GCTCTTC 1 cut(s) 207
MaeI CTAG 1 cut(s) 650
MaeIII GTNAC 3 cut(s) 307, 352, 662
MalI GATC 4 cut(s) 33, 374, 615, 635
MboI GATC 4 cut(s) 31, 372, 613, 633
MboII GAAGA 3 cut(s) 115, 224, 374
MflI RGATCY 1 cut(s) 372
MluCI AATT 2 cut(s) 330, 379
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 2 cut(s) 511, 591
MnlI CCTC 5 cut(s) 50, 131, 142, 273, 527
MroXI GAANNNNTTC 1 cut(s) 137
MspI CCGG 4 cut(s) 500, 524, 603, 660
MspR9I CCNGG 4 cut(s) 100, 416, 500, 604
MvaI CCWGG 2 cut(s) 100, 416
MwoI GCNNNNNNNGC 2 cut(s) 78, 515
NciI CCSGG 2 cut(s) 500, 604
NdeII GATC 4 cut(s) 31, 372, 613, 633
NlaIII CATG 2 cut(s) 171, 523
NlaIV GGNNCC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 2 cut(s) 307, 352
NspV TTCGAA 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 6 cut(s) 103, 128, 230, 251, 432, 623
PinAI ACCGGT 1 cut(s) 659
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 98, 414
PspGI CCWGG 2 cut(s) 98, 414
PspN4I GGNNCC 1 cut(s) 348
PspXI VCTCGAGB 1 cut(s) 146
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 4 cut(s) 348, 423, 465, 548
RsaNI GTAC 4 cut(s) 347, 422, 464, 547
SapI GCTCTTC 1 cut(s) 207
Sau3AI GATC 4 cut(s) 31, 372, 613, 633
ScaI AGTACT 1 cut(s) 465
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 4 cut(s) 100, 416, 500, 604
SetI ASST 9 cut(s) 42, 101, 140, 219, 352, 417, 538, 651, 671
Sfr274I CTCGAG 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 330, 379
SsiI CCGC 2 cut(s) 70, 572
SspMI CTAG 1 cut(s) 650
StyD4I CCNGG 4 cut(s) 98, 414, 498, 602
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 4 cut(s) 299, 404, 426, 440
TaqI TCGA 5 cut(s) 126, 131, 147, 287, 636
TasI AATT 2 cut(s) 330, 379
TatI WGTACW 3 cut(s) 421, 463, 546
TfiI GAWTC 6 cut(s) 103, 128, 230, 251, 432, 623
TscAI CASTG 2 cut(s) 304, 679
TseFI GTSAC 2 cut(s) 307, 352
Tsp45I GTSAC 2 cut(s) 307, 352
TspDTI ATGAA 2 cut(s) 49, 225
TspGWI ACGGA 2 cut(s) 635, 657
TspRI CASTG 2 cut(s) 304, 679
XapI RAATTY 1 cut(s) 330
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 650
ZrmI AGTACT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.