Rorug05G0244700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013644
Physical Location & Seq
Forward (+)
26360994 .. 26364609
3616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0244700.1

Sequence Viewer

Length: 2535 bp
ATGGTGAAGATGAAACTACTGAGTTGGGTACCATTGGTGTTGGCTATTGTTGTGTTTATGAGTCATGGAGCCTCTGGTTCATTTAATCCTTCCGATAACTACTTGATTGCTTGTGGTTCTTCGAAAAATATCACATTCCTAGGCCGAACCTTTGTTCCTGATACACTGCAATCTTCATTTGTACTGAAAAGTGCAAATTCTTCAGTTGCTAGCTCCAGTTCCAATACCCCTTCTCCTATTTACCAATCTGCTCGAATTTTCAAGGAAACATCTTCCTATAAGTTCAAAATCCAGAAAGAAGGCCGGCATTGGGTTCGCCTTTATTTCTACCCATTAGCAAACTCAGGCCAAAACTTGACCTCTGCTCCAATAACTGTGATCACTGATAGCTTTGTACTCTTGAACAACTTCACTTTCGAGAACTATAATGGTTCTTACTTGTTCAAGGAGTATGCGATCAACGTTACTTCAGATAGTTTGATCCTCACCATCATTCCTTCAAACAGTTCAGTTGCTTTTGTTAATGCAATTGAAGTGGTCTCAATCCCGGATGAACTTATCCCCGATCAGGCATATGCTGTAAATCCATCTGCTCCTTTTAGTGGCATTTCTGCACTTGCCCTTCAAACAATGTACCGATTAAATATGGGGGGTCCTTTACTCACCGCTGACAATGATACCCTTAAAAGAACTTGGGAGAATGATGTGAAATACCTTCATGTCAACAGCTCTGCAGTGAATGTATCGATCAACCCTGCCAGCGTGAAGTATCCTGTGGCTGTCACACCAGAGATAGCACCAAACTGGGTCTATGCCACTGCTGAAGCCATGGGAGAGGCGAATGTACCAAATGGGAACTTCAACATAACTTGGGTCTTTCAGGCAGACCCAAATTATTTGTATCTTGTTCGGGTACATTTCTGTGATATTGTCAGCAAGGCACTGAATAACCTAGTTTTCAATCTTTTCATCAATTCCGACAATGTGCTGTCGAGTCTCGACCTGTCCTCCATTACTGGTGACTTGGCTGTGCCGTATTACAAAGACTTTGTTTCCAACTCCTCAGCAGATTCAAATACTTTGACAGTCAGTGTGGGTCCAGATTCAATGGCTGATGTCACTAATGCAATTCTGAATGGCTTGGAGATTTTGAAGATCAGCAATGACTTGGGGAGCTTGGATGGGTCTGTGTCTGTCCAGAGTCTCCTTCCCAGTTCACCCTCAAAGAGTAATAACATAGTAATCATCGCTGGGTGTGTTGTCGGAGCTGTAGCTCTTGTGGCAAGTATTGGTCTCTTATATTGGTGCTTGGCATCTCGCAATTCAAAGACTACTCCTAACCAAGGTCATCCATGGCCACATCTGCCCTCGTATGGAAACTCTCAGACAGTGACCAAAATGTCAACAACTTCACAAAAGAGTGGAACAGCTAGCTGCATCTCATTAGCTTCCTCCAATCTTGGCCGCTTATTCATGTTCCAAGAAATCCTGGATGCAACCAACAAGTTTGATGAGAGCCTACTTCTCGGGGTTGGCGGTTTTGGCAGGGTTTACAAGGGAACACTAGAAGATGGGACAAAAGTAGCTGTTAAAAGAGGAAACCCCAGATCAGAACAAGGTCTTGCTGAATTCCGAACTGAGATTGAAATGTTATCGAAGCTTCGTCACCGCCACCTTGTGTCTCTTATCGGTTATTGTGATGAAAGGTCAGAGATGATTCTTGTGTATGAATACATGGCTAATGGACCGCTCCGGAGCCATTTGTATGGAACAGATTTGCCAACCTTGTCATGGAAGCTACGCCTTGAAATTTGCATTGGGGCTGCAAGAGGACTCCATTATCTCCACACCGGTGCAGCTCAAAGCATAATTCACCGAGATGTGAAGACAACAAACATTCTCTTGGATGAGAACTTTTTAGCCAAAGTTGCAGATTTTGGCCTCTCGAAAGCAGGTCCAGCTATAGATCAGACTCATGTCAGTACGGCTGTTAAGGGTAGTTTTGGTTACCTTGATCCTGAATACTTTAGAAGGCAGCAGCTCACTGAGAAATCAGACGTGTATTCGTTTGGAGTAGTTCTAATGGAAGTTCTTTGCACAAGACCAGCTTTGAACCCGGTTCTTCCCAGAGAGCAAGTGAACATAGCAGAATGGGCAATGACCTGGCAAAAGAAGGGCATGCTGGACCAAATCATGGACTCGAATCTGGCTGGGAATGTAAATCCAGCTTCTCTTAAGAAGTTTGGTGAGACAGCTGAGAAGTGCCTTGCTGAGTATGGTGTTGACAGGCCATCAATGGGAGATGTCTTGTGGAATCTTGAATATGCTCTTCAGCTTGAGGAGACTTCATCTGCGCTCATGGAACCAGAAGATAACAGCACAAACCACATACGAGACATCGAATTGACACCACTAGAGCCATTTGACAACAGCGTGAGTATGATTGAGGGAGGGCACTCCGGCACTGATGATGACACTCAAGATGCTGCCACAAGTGCTGTGTTCTCTCAGCTAGTAAATCCTCGCGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

844

Amino Acids

92.17

Weight (kDa)

5.38

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 36 - 385 2.1e-30 Malectin-like domain
Pkinase PF00069 508 - 768 8.6e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 509 - 766 4.4e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26742 FvH4_3g26742
malus_domestica MD11G1175200.v1.1
pyrus_communis pycom11g15030
rosa_chinensis RchiOBHm_Chr5g0049171
rosa_laevigata RLG00000034596
rosa_multiflora Rmu_sc0001677.1_g000029
rosa_roxburghii Rroxscaffold_1G00032560
rosa_rugosa Rorug05G0244500 Rorug05G0244600 Rorug05G0244700 Rorug05G0244800 Rorug05G0244900
rosa_samantha Rh5AG323200 Rh5BG333700 Rh5CG358800 Rh5DG345200
rosa_wichuraiana Rw5G030510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1399
Acc36I ACCTGC 1 cut(s) 1943
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 2194
AccBSI CCGCTC 1 cut(s) 1750
AccII CGCG 1 cut(s) 2526
AccIII TCCGGA 1 cut(s) 1752
AciI CCGC 6 cut(s) 666, 1465, 1536, 1669, 1748, 2526
AclI AACGTT 1 cut(s) 462
AclWI GGATC 2 cut(s) 475, 2009
AcoI YGGCCR 2 cut(s) 1355, 1462
AcsI RAATTY 4 cut(s) 196, 255, 1628, 1809
AcuI CTGAAG 4 cut(s) 186, 453, 843, 2315
AdeI CACNNNGTG 1 cut(s) 1678
AfaI GTAC 7 cut(s) 30, 183, 396, 635, 846, 915, 1984
AfiI CCNNNNNNNGG 8 cut(s) 310, 568, 602, 1343, 1373, 1791, 2194, 2297
AflII CTTAAG 1 cut(s) 2234
AflIII ACRYGT 1 cut(s) 2058
AgeI ACCGGT 1 cut(s) 1850
AjiI CACGTC 1 cut(s) 2059
AjnI CCWGG 2 cut(s) 1488, 2162
AjuI GAANNNNNNNTTGG 2 cut(s) 1800, 1832
AleI CACNNNNGTG 1 cut(s) 1851
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
Alw26I GTCTC 8 cut(s) 544, 1001, 1208, 1298, 1686, 2243, 2336, 2388
AlwI GGATC 2 cut(s) 475, 2009
Ama87I CYCGRG 1 cut(s) 1526
Aor13HI TCCGGA 1 cut(s) 1752
AoxI GGCC 7 cut(s) 142, 301, 346, 1355, 1462, 1939, 2288
ApeKI GCWGC 6 cut(s) 1434, 1823, 1856, 2035, 2038, 2486
ApoI RAATTY 4 cut(s) 196, 255, 1628, 1809
AsiGI ACCGGT 1 cut(s) 1850
Asp700I GAANNNNTTC 1 cut(s) 407
Asp718I GGTACC 1 cut(s) 28
AspA2I CCTAGG 1 cut(s) 139
AspLEI GCGC 1 cut(s) 2356
AspS9I GGNCC 5 cut(s) 653, 1097, 1745, 1955, 2185
AsuC2I CCSGG 2 cut(s) 548, 2117
AsuHPI GGTGA 8 cut(s) 16, 478, 655, 1031, 1209, 1658, 1865, 2258
AsuII TTCGAA 1 cut(s) 122
AsuNHI GCTAGC 2 cut(s) 209, 1430
AvaI CYCGRG 1 cut(s) 1526
AvaII GGWCC 5 cut(s) 653, 1097, 1745, 1955, 2185
AvrII CCTAGG 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 2457
BalI TGGCCA 1 cut(s) 1357
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 1892
BbvCI CCTCAGC 1 cut(s) 1063
BbvI GCAGC 6 cut(s) 1421, 1810, 1868, 2047, 2050, 2473
BccI CCATC 5 cut(s) 497, 595, 1175, 1565, 2299
BceAI ACGGC 2 cut(s) 1018, 2001
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 2 cut(s) 1490, 2164
BciVI GTATCC 1 cut(s) 780
BclI TGATCA 1 cut(s) 378
BcnI CCSGG 2 cut(s) 548, 2117
BcoDI GTCTC 8 cut(s) 544, 1001, 1208, 1298, 1686, 2243, 2336, 2388
BfaI CTAG 7 cut(s) 140, 210, 953, 1431, 1565, 2414, 2513
BfmI CTRYAG 3 cut(s) 732, 1269, 1962
BfrI CTTAAG 1 cut(s) 2234
BfuAI ACCTGC 1 cut(s) 1943
BfuI GTATCC 1 cut(s) 780
BisI GCNGC 7 cut(s) 1435, 1465, 1824, 1857, 2036, 2039, 2487
BlnI CCTAGG 1 cut(s) 139
BlsI GCNGC 7 cut(s) 1436, 1466, 1825, 1858, 2037, 2040, 2488
Bme1390I CCNGG 4 cut(s) 548, 1490, 2117, 2164
Bme18I GGWCC 5 cut(s) 653, 1097, 1745, 1955, 2185
BmeT110I CYCGRG 1 cut(s) 1526
BmgBI CACGTC 1 cut(s) 2059
BmgT120I GGNCC 5 cut(s) 653, 1097, 1745, 1955, 2185
BmiI GGNNCC 6 cut(s) 30, 70, 654, 1098, 1757, 2364
BmrFI CCNGG 4 cut(s) 548, 1490, 2117, 2164
BmrI ACTGGG 2 cut(s) 814, 1206
BmsI GCATC 4 cut(s) 1322, 1446, 1483, 2473
BmtI GCTAGC 2 cut(s) 213, 1434
BmuI ACTGGG 2 cut(s) 814, 1206
BoxI GACNNNNGTC 1 cut(s) 1976
BpiI GAAGAC 1 cut(s) 1892
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 1063
Bpu14I TTCGAA 1 cut(s) 122
BpuEI CTTGAG 2 cut(s) 2357, 2463
BpuMI CCSGG 2 cut(s) 548, 2117
Bsa29I ATCGAT 1 cut(s) 746
BsaI GGTCTC 2 cut(s) 544, 1298
BsaJI CCNNGG 4 cut(s) 139, 828, 1342, 1352
BsaWI WCCGGW 2 cut(s) 1752, 1850
BsaXI ACNNNNNCTCC 6 cut(s) 217, 247, 349, 379, 992, 1022
Bsc4I CCNNNNNNNGG 8 cut(s) 310, 568, 602, 1343, 1373, 1791, 2194, 2297
Bse118I RCCGGY 2 cut(s) 303, 1850
Bse1I ACTGG 4 cut(s) 216, 809, 1021, 1212
Bse3DI GCAATG 2 cut(s) 1168, 2163
BseAI TCCGGA 1 cut(s) 1752
BseBI CCWGG 2 cut(s) 1490, 2164
BseCI ATCGAT 1 cut(s) 746
BseDI CCNNGG 4 cut(s) 139, 828, 1342, 1352
BseGI GGATG 5 cut(s) 556, 1186, 1348, 1498, 1912
BseLI CCNNNNNNNGG 8 cut(s) 310, 568, 602, 1343, 1373, 1791, 2194, 2297
BseMI GCAATG 2 cut(s) 1168, 2163
BseMII CTCAG 9 cut(s) 11, 357, 1077, 1397, 1629, 2037, 2247, 2262, 2522
BseNI ACTGG 4 cut(s) 216, 809, 1021, 1212
BseRI GAGGAG 2 cut(s) 1051, 2354
BseSI GKGCMC 1 cut(s) 2457
BseXI GCAGC 6 cut(s) 1421, 1810, 1868, 2047, 2050, 2473
BseYI CCCAGC 2 cut(s) 1250, 2210
BsgI GTGCAG 2 cut(s) 597, 1875
Bsh1236I CGCG 1 cut(s) 2526
BshFI GGCC 7 cut(s) 144, 303, 348, 1357, 1464, 1941, 2290
BshNI GGYRCC 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 1850
BshVI ATCGAT 1 cut(s) 746
BsiHKCI CYCGRG 1 cut(s) 1526
BsiSI CCGG 6 cut(s) 304, 548, 1753, 1851, 2117, 2460
BslFI GGGAC 1 cut(s) 1588
BslI CCNNNNNNNGG 8 cut(s) 310, 568, 602, 1343, 1373, 1791, 2194, 2297
BsmAI GTCTC 8 cut(s) 544, 1001, 1208, 1298, 1686, 2243, 2336, 2388
BsmFI GGGAC 1 cut(s) 1588
BsnI GGCC 7 cut(s) 144, 303, 348, 1357, 1464, 1941, 2290
Bso31I GGTCTC 2 cut(s) 544, 1298
BsoBI CYCGRG 1 cut(s) 1526
Bsp119I TTCGAA 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 2457
Bsp13I TCCGGA 1 cut(s) 1752
Bsp143I GATC 9 cut(s) 378, 456, 480, 565, 747, 1155, 1607, 1966, 2014
Bsp19I CCATGG 2 cut(s) 828, 1352
BspACI CCGC 6 cut(s) 666, 1465, 1536, 1669, 1748, 2526
BspANI GGCC 7 cut(s) 144, 303, 348, 1357, 1464, 1941, 2290
BspCNI CTCAG 9 cut(s) 12, 356, 1076, 1396, 1630, 2038, 2248, 2263, 2521
BspDI ATCGAT 1 cut(s) 746
BspEI TCCGGA 1 cut(s) 1752
BspFNI CGCG 1 cut(s) 2526
BspLI GGNNCC 6 cut(s) 30, 70, 654, 1098, 1757, 2364
BspMAI CTGCAG 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 1943
BspOI GCTAGC 2 cut(s) 213, 1434
BspPI GGATC 2 cut(s) 475, 2009
BspQI GCTCTTC 1 cut(s) 2334
BspT104I TTCGAA 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 28
BspTI CTTAAG 1 cut(s) 2234
BspTNI GGTCTC 2 cut(s) 544, 1298
BsrBI CCGCTC 1 cut(s) 1750
BsrDI GCAATG 2 cut(s) 1168, 2163
BsrFI RCCGGY 2 cut(s) 303, 1850
BsrI ACTGG 4 cut(s) 216, 809, 1021, 1212
BssAI RCCGGY 2 cut(s) 303, 1850
BssECI CCNNGG 4 cut(s) 139, 828, 1342, 1352
BssMI GATC 9 cut(s) 378, 456, 480, 565, 747, 1155, 1607, 1966, 2014
BssT1I CCWWGG 4 cut(s) 139, 828, 1342, 1352
Bst2UI CCWGG 2 cut(s) 1490, 2164
Bst4CI ACNGT 4 cut(s) 376, 506, 1087, 1390
Bst6I CTCTTC 1 cut(s) 2334
BstAFI CTTAAG 1 cut(s) 2234
BstBI TTCGAA 1 cut(s) 122
BstC8I GCNNGC 5 cut(s) 211, 305, 760, 1432, 2180
BstDEI CTNAG 9 cut(s) 20, 343, 1063, 1383, 1638, 2046, 2256, 2271, 2508
BstDSI CCRYGG 2 cut(s) 828, 1352
BstEII GGTNACC 1 cut(s) 2006
BstENI CCTNNNNNAGG 1 cut(s) 1341
BstF5I GGATG 5 cut(s) 556, 1186, 1348, 1498, 1912
BstFNI CGCG 1 cut(s) 2526
BstHHI GCGC 1 cut(s) 2356
BstKTI GATC 9 cut(s) 381, 459, 483, 568, 750, 1158, 1610, 1969, 2017
BstMAI GTCTC 8 cut(s) 544, 1001, 1208, 1298, 1686, 2243, 2336, 2388
BstMBI GATC 9 cut(s) 378, 456, 480, 565, 747, 1155, 1607, 1966, 2014
BstMWI GCNNNNNNNGC 7 cut(s) 1280, 1363, 1542, 1928, 1958, 2153, 2495
BstNI CCWGG 2 cut(s) 1490, 2164
BstNSI RCATGY 1 cut(s) 2182
BstPAI GACNNNNGTC 1 cut(s) 1976
BstPI GGTNACC 1 cut(s) 2006
BstSCI CCNGG 4 cut(s) 546, 1488, 2115, 2162
BstSFI CTRYAG 3 cut(s) 732, 1269, 1962
BstSLI GKGCMC 1 cut(s) 2457
BstUI CGCG 1 cut(s) 2526
BstV1I GCAGC 6 cut(s) 1421, 1810, 1868, 2047, 2050, 2473
BstV2I GAAGAC 1 cut(s) 1892
BstXI CCANNNNNNTGG 1 cut(s) 1766
Bsu15I ATCGAT 1 cut(s) 746
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 7 cut(s) 144, 303, 348, 1357, 1464, 1941, 2290
BsuTUI ATCGAT 1 cut(s) 746
BtgI CCRYGG 2 cut(s) 828, 1352
BtgZI GCGATG 1 cut(s) 1231
BtrI CACGTC 1 cut(s) 2059
BtsCI GGATG 5 cut(s) 556, 1186, 1348, 1498, 1912
BtsI GCAGTG 3 cut(s) 164, 741, 816
BtsIMutI CAGTG 9 cut(s) 164, 381, 741, 816, 941, 1096, 1395, 2043, 2463
BveI ACCTGC 1 cut(s) 1943
Cac8I GCNNGC 5 cut(s) 211, 305, 760, 1432, 2180
CfoI GCGC 1 cut(s) 2356
Cfr10I RCCGGY 2 cut(s) 303, 1850
Cfr13I GGNCC 5 cut(s) 653, 1097, 1745, 1955, 2185
ClaI ATCGAT 1 cut(s) 746
Csp6I GTAC 7 cut(s) 29, 182, 395, 634, 845, 914, 1983
CspAI ACCGGT 1 cut(s) 1850
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviQI GTAC 7 cut(s) 29, 182, 395, 634, 845, 914, 1983
DdeI CTNAG 9 cut(s) 20, 343, 1063, 1383, 1638, 2046, 2256, 2271, 2508
DpnI GATC 9 cut(s) 380, 458, 482, 567, 749, 1157, 1609, 1968, 2016
DpnII GATC 9 cut(s) 378, 456, 480, 565, 747, 1155, 1607, 1966, 2014
DraIII CACNNNGTG 1 cut(s) 1678
DrdI GACNNNNNNGTC 1 cut(s) 1399
DseDI GACNNNNNNGTC 1 cut(s) 1399
EaeI YGGCCR 2 cut(s) 1355, 1462
Eam1104I CTCTTC 1 cut(s) 2334
EarI CTCTTC 1 cut(s) 2334
Eco130I CCWWGG 4 cut(s) 139, 828, 1342, 1352
Eco31I GGTCTC 2 cut(s) 544, 1298
Eco47I GGWCC 5 cut(s) 653, 1097, 1745, 1955, 2185
Eco57I CTGAAG 4 cut(s) 186, 453, 843, 2315
Eco88I CYCGRG 1 cut(s) 1526
Eco91I GGTNACC 1 cut(s) 2006
EcoNI CCTNNNNNAGG 1 cut(s) 1341
EcoO109I RGGNCCY 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 2006
EcoRI GAATTC 1 cut(s) 1628
EcoRII CCWGG 2 cut(s) 1488, 2162
EcoT14I CCWWGG 4 cut(s) 139, 828, 1342, 1352
ErhI CCWWGG 4 cut(s) 139, 828, 1342, 1352
FalI AAGNNNNNCTT 2 cut(s) 2092, 2124
FaqI GGGAC 1 cut(s) 1588
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 7 cut(s) 1435, 1465, 1824, 1857, 2036, 2039, 2487
FokI GGATG 5 cut(s) 563, 1193, 1335, 1505, 1919
Fsp4HI GCNGC 7 cut(s) 1435, 1465, 1824, 1857, 2036, 2039, 2487
FspBI CTAG 7 cut(s) 140, 210, 953, 1431, 1565, 2414, 2513
GlaI GCGC 1 cut(s) 2355
GluI GCNGC 7 cut(s) 1435, 1465, 1824, 1857, 2036, 2039, 2487
GsaI CCCAGC 2 cut(s) 1254, 2214
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 7 cut(s) 144, 303, 348, 1357, 1464, 1941, 2290
HapII CCGG 6 cut(s) 304, 548, 1753, 1851, 2117, 2460
HhaI GCGC 1 cut(s) 2356
Hin6I GCGC 1 cut(s) 2354
HinP1I GCGC 1 cut(s) 2354
HincII GTYRAC 3 cut(s) 724, 1404, 2284
HindII GTYRAC 3 cut(s) 724, 1404, 2284
HindIII AAGCTT 1 cut(s) 1658
HpaII CCGG 6 cut(s) 304, 548, 1753, 1851, 2117, 2460
HphI GGTGA 8 cut(s) 16, 478, 655, 1031, 1209, 1658, 1865, 2258
Hpy166II GTNNAC 6 cut(s) 724, 1217, 1404, 1552, 2140, 2284
Hpy8I GTNNAC 6 cut(s) 724, 1217, 1404, 1552, 2140, 2284
HpyAV CCTTC 9 cut(s) 99, 240, 293, 507, 632, 725, 1217, 2025, 2167
HpyCH4III ACNGT 4 cut(s) 376, 506, 1087, 1390
HpyCH4IV ACGT 2 cut(s) 462, 2058
HpyF10VI GCNNNNNNNGC 7 cut(s) 1280, 1363, 1542, 1928, 1958, 2153, 2495
HpyF3I CTNAG 9 cut(s) 20, 343, 1063, 1383, 1638, 2046, 2256, 2271, 2508
HpySE526I ACGT 2 cut(s) 462, 2058
HspAI GCGC 1 cut(s) 2354
Kpn2I TCCGGA 1 cut(s) 1752
KpnI GGTACC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 9 cut(s) 378, 456, 480, 565, 747, 1155, 1607, 1966, 2014
LguI GCTCTTC 1 cut(s) 2334
LmnI GCTCC 8 cut(s) 68, 218, 370, 598, 1173, 1265, 1755, 1755
Lsp1109I GCAGC 6 cut(s) 1421, 1810, 1868, 2047, 2050, 2473
LweI GCATC 4 cut(s) 1322, 1446, 1483, 2473
MaeI CTAG 7 cut(s) 140, 210, 953, 1431, 1565, 2414, 2513
MaeII ACGT 2 cut(s) 462, 2058
MaeIII GTNAC 7 cut(s) 463, 781, 1019, 1117, 1390, 1664, 2006
MalI GATC 9 cut(s) 380, 458, 482, 567, 749, 1157, 1609, 1968, 2016
MbiI CCGCTC 1 cut(s) 1750
MboI GATC 9 cut(s) 378, 456, 480, 565, 747, 1155, 1607, 1966, 2014
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 2457
MlsI TGGCCA 1 cut(s) 1357
MluNI TGGCCA 1 cut(s) 1357
MlyI GAGTC 6 cut(s) 70, 1003, 1210, 1827, 1966, 2192
MmeI TCCRAC 3 cut(s) 1002, 1080, 1243
Mox20I TGGCCA 1 cut(s) 1357
MroI TCCGGA 1 cut(s) 1752
MroNI GCCGGC 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 1357
MseI TTAA 7 cut(s) 84, 522, 641, 684, 1590, 1992, 2235
MslI CAYNNNNRTG 4 cut(s) 921, 1764, 1851, 1878
Msp20I TGGCCA 1 cut(s) 1357
MspA1I CMGCKG 2 cut(s) 668, 2255
MspCI CTTAAG 1 cut(s) 2234
MspI CCGG 6 cut(s) 304, 548, 1753, 1851, 2117, 2460
MspR9I CCNGG 4 cut(s) 548, 1490, 2117, 2164
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 2 cut(s) 1490, 2164
MvnI CGCG 1 cut(s) 2526
MwoI GCNNNNNNNGC 7 cut(s) 1280, 1363, 1542, 1928, 1958, 2153, 2495
NaeI GCCGGC 1 cut(s) 305
NciI CCSGG 2 cut(s) 548, 2117
NcoI CCATGG 2 cut(s) 828, 1352
NdeI CATATG 1 cut(s) 574
NdeII GATC 9 cut(s) 378, 456, 480, 565, 747, 1155, 1607, 1966, 2014
NgoMIV GCCGGC 1 cut(s) 303
NheI GCTAGC 2 cut(s) 209, 1430
NlaIV GGNNCC 6 cut(s) 30, 70, 654, 1098, 1757, 2364
NmuCI GTSAC 5 cut(s) 781, 1019, 1117, 1390, 1664
NspI RCATGY 1 cut(s) 2182
NspV TTCGAA 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 1851
PaeI GCATGC 1 cut(s) 2182
PciSI GCTCTTC 1 cut(s) 2334
PdiI GCCGGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 5 cut(s) 1070, 1103, 1717, 2203, 2314
PflMI CCANNNNNTGG 1 cut(s) 2194
PfoI TCCNGGA 2 cut(s) 546, 1488
PinAI ACCGGT 1 cut(s) 1850
PkrI GCNGC 7 cut(s) 1436, 1466, 1825, 1858, 2037, 2040, 2488
PleI GAGTC 6 cut(s) 69, 1002, 1209, 1827, 1966, 2192
PpsI GAGTC 6 cut(s) 69, 1002, 1209, 1827, 1966, 2192
PpuMI RGGWCCY 1 cut(s) 653
PshAI GACNNNNGTC 1 cut(s) 1976
Psp1406I AACGTT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 2 cut(s) 1488, 2162
PspEI GGTNACC 1 cut(s) 2006
PspFI CCCAGC 2 cut(s) 1250, 2210
PspGI CCWGG 2 cut(s) 1488, 2162
PspN4I GGNNCC 6 cut(s) 30, 70, 654, 1098, 1757, 2364
PspPI GGNCC 5 cut(s) 653, 1097, 1745, 1955, 2185
PspPPI RGGWCCY 1 cut(s) 653
PstI CTGCAG 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 2255
RsaI GTAC 7 cut(s) 30, 183, 396, 635, 846, 915, 1984
RsaNI GTAC 7 cut(s) 29, 182, 395, 634, 845, 914, 1983
RseI CAYNNNNRTG 4 cut(s) 921, 1764, 1851, 1878
SapI GCTCTTC 1 cut(s) 2334
SaqAI TTAA 7 cut(s) 84, 522, 641, 684, 1590, 1992, 2235
SatI GCNGC 7 cut(s) 1435, 1465, 1824, 1857, 2036, 2039, 2487
Sau3AI GATC 9 cut(s) 378, 456, 480, 565, 747, 1155, 1607, 1966, 2014
Sau96I GGNCC 5 cut(s) 653, 1097, 1745, 1955, 2185
SchI GAGTC 6 cut(s) 70, 1003, 1210, 1827, 1966, 2192
ScrFI CCNGG 4 cut(s) 548, 1490, 2117, 2164
SduI GDGCHC 1 cut(s) 2457
SfaNI GCATC 4 cut(s) 1322, 1446, 1483, 2473
SfcI CTRYAG 3 cut(s) 732, 1269, 1962
SfuI TTCGAA 1 cut(s) 122
SgrAI CRCCGGYG 1 cut(s) 1850
SinI GGWCC 5 cut(s) 653, 1097, 1745, 1955, 2185
SmiMI CAYNNNNRTG 4 cut(s) 921, 1764, 1851, 1878
SmlI CTYRAG 3 cut(s) 2234, 2336, 2478
SmoI CTYRAG 3 cut(s) 2234, 2336, 2478
SphI GCATGC 1 cut(s) 2182
SsiI CCGC 6 cut(s) 666, 1465, 1536, 1669, 1748, 2526
SspMI CTAG 7 cut(s) 140, 210, 953, 1431, 1565, 2414, 2513
StyD4I CCNGG 4 cut(s) 546, 1488, 2115, 2162
StyI CCWWGG 4 cut(s) 139, 828, 1342, 1352
TaaI ACNGT 4 cut(s) 376, 506, 1087, 1390
TaiI ACGT 2 cut(s) 465, 2061
TatI WGTACW 2 cut(s) 181, 394
TauI GCSGC 1 cut(s) 1467
TfiI GAWTC 5 cut(s) 1070, 1103, 1717, 2203, 2314
Tru1I TTAA 7 cut(s) 84, 522, 641, 684, 1590, 1992, 2235
Tru9I TTAA 7 cut(s) 84, 522, 641, 684, 1590, 1992, 2235
TscAI CASTG 9 cut(s) 171, 388, 741, 823, 948, 1096, 1395, 2050, 2470
TseFI GTSAC 5 cut(s) 781, 1019, 1117, 1390, 1664
TseI GCWGC 6 cut(s) 1434, 1823, 1856, 2035, 2038, 2486
Tsp45I GTSAC 5 cut(s) 781, 1019, 1117, 1390, 1664
TspRI CASTG 9 cut(s) 171, 388, 741, 823, 948, 1096, 1395, 2050, 2470
Van91I CCANNNNNTGG 1 cut(s) 2194
Vha464I CTTAAG 1 cut(s) 2234
VpaK11BI GGWCC 5 cut(s) 653, 1097, 1745, 1955, 2185
XagI CCTNNNNNAGG 1 cut(s) 1341
XapI RAATTY 4 cut(s) 196, 255, 1628, 1809
XceI RCATGY 1 cut(s) 2182
XcmI CCANNNNNNNNNTGG 1 cut(s) 1788
XmaJI CCTAGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 7 cut(s) 140, 210, 953, 1431, 1565, 2414, 2513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.