Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g26742 FvH4_3g26742 |
| malus_domestica | MD11G1175200.v1.1 |
| pyrus_communis | pycom11g15030 |
| rosa_chinensis | RchiOBHm_Chr5g0049171 |
| rosa_laevigata | RLG00000034596 |
| rosa_multiflora | Rmu_sc0001677.1_g000029 |
| rosa_roxburghii | Rroxscaffold_1G00032560 |
| rosa_rugosa | Rorug05G0244500 Rorug05G0244600 Rorug05G0244700 Rorug05G0244800 Rorug05G0244900 |
| rosa_samantha | Rh5AG323200 Rh5BG333700 Rh5CG358800 Rh5DG345200 |
| rosa_wichuraiana | Rw5G030510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 946 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 287, 722 |
| AccI | GTMKAC | 3 cut(s) | 950, 1776, 1837 |
| AccII | CGCG | 1 cut(s) | 604 |
| AciI | CCGC | 5 cut(s) | 513, 1110, 1280, 1295, 2107 |
| AclI | AACGTT | 2 cut(s) | 299, 1441 |
| AclWI | GGATC | 3 cut(s) | 1211, 1525, 2065 |
| AcoI | YGGCCR | 1 cut(s) | 1783 |
| AcsI | RAATTY | 7 cut(s) | 127, 209, 284, 1269, 1411, 1509, 1788 |
| AcuI | CTGAAG | 6 cut(s) | 1209, 1500, 1524, 1743, 1815, 1899 |
| AfaI | GTAC | 6 cut(s) | 511, 714, 727, 1697, 1752, 1913 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 287, 722 |
| AflIII | ACRYGT | 2 cut(s) | 228, 1127 |
| AjnI | CCWGG | 2 cut(s) | 721, 1261 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1097, 1129 |
| Alw21I | GWGCWC | 1 cut(s) | 337 |
| Alw26I | GTCTC | 3 cut(s) | 1092, 1226, 1859 |
| Alw44I | GTGCAC | 1 cut(s) | 333 |
| AlwI | GGATC | 3 cut(s) | 1211, 1525, 2065 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 722 |
| AoxI | GGCC | 2 cut(s) | 1098, 1783 |
| ApaLI | GTGCAC | 1 cut(s) | 333 |
| ApeKI | GCWGC | 5 cut(s) | 799, 929, 1292, 1969, 2100 |
| ApoI | RAATTY | 7 cut(s) | 127, 209, 284, 1269, 1411, 1509, 1788 |
| AseI | ATTAAT | 2 cut(s) | 1200, 1995 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 769 |
| AspLEI | GCGC | 1 cut(s) | 666 |
| AspS9I | GGNCC | 1 cut(s) | 537 |
| AsuHPI | GGTGA | 6 cut(s) | 489, 670, 692, 975, 2023, 2048 |
| AsuNHI | GCTAGC | 1 cut(s) | 236 |
| AvaII | GGWCC | 1 cut(s) | 537 |
| AxyI | CCTNAGG | 1 cut(s) | 1392 |
| BaeGI | GKGCMC | 1 cut(s) | 337 |
| BalI | TGGCCA | 1 cut(s) | 1785 |
| Bbv12I | GWGCWC | 1 cut(s) | 337 |
| BbvCI | CCTCAGC | 1 cut(s) | 1702 |
| BbvI | GCAGC | 4 cut(s) | 786, 916, 1304, 1981 |
| BccI | CCATC | 2 cut(s) | 403, 637 |
| BciT130I | CCWGG | 2 cut(s) | 723, 1263 |
| BcoDI | GTCTC | 3 cut(s) | 1092, 1226, 1859 |
| BfaI | CTAG | 4 cut(s) | 237, 507, 1368, 1707 |
| BfmI | CTRYAG | 3 cut(s) | 264, 456, 1635 |
| BglII | AGATCT | 1 cut(s) | 1619 |
| BisI | GCNGC | 6 cut(s) | 800, 930, 1110, 1293, 1970, 2101 |
| BlsI | GCNGC | 6 cut(s) | 801, 931, 1111, 1294, 1971, 2102 |
| Bme1390I | CCNGG | 2 cut(s) | 723, 1263 |
| Bme18I | GGWCC | 1 cut(s) | 537 |
| BmgT120I | GGNCC | 1 cut(s) | 537 |
| BmiI | GGNNCC | 1 cut(s) | 1299 |
| BmrFI | CCNGG | 2 cut(s) | 723, 1263 |
| BmrI | ACTGGG | 1 cut(s) | 687 |
| BmsI | GCATC | 5 cut(s) | 148, 1153, 1231, 1965, 2086 |
| BmtI | GCTAGC | 1 cut(s) | 240 |
| BmuI | ACTGGG | 1 cut(s) | 687 |
| BpmI | CTGGAG | 2 cut(s) | 422, 1706 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1702 |
| BpuEI | CTTGAG | 5 cut(s) | 206, 549, 1296, 1500, 1883 |
| Bsa29I | ATCGAT | 1 cut(s) | 2048 |
| BsaAI | YACGTR | 2 cut(s) | 821, 1385 |
| BsaJI | CCNNGG | 4 cut(s) | 170, 185, 721, 1521 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1679, 1709 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 287, 722 |
| Bse1I | ACTGG | 5 cut(s) | 340, 439, 693, 1608, 1786 |
| Bse21I | CCTNAGG | 1 cut(s) | 1392 |
| BseBI | CCWGG | 2 cut(s) | 723, 1263 |
| BseCI | ATCGAT | 1 cut(s) | 2048 |
| BseDI | CCNNGG | 4 cut(s) | 170, 185, 721, 1521 |
| BseGI | GGATG | 4 cut(s) | 518, 1246, 1354, 1945 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 287, 722 |
| BseMII | CTCAG | 8 cut(s) | 1086, 1097, 1148, 1316, 1383, 1630, 1658, 1716 |
| BseNI | ACTGG | 5 cut(s) | 340, 439, 693, 1608, 1786 |
| BseRI | GAGGAG | 1 cut(s) | 1299 |
| BseSI | GKGCMC | 1 cut(s) | 337 |
| BseXI | GCAGC | 4 cut(s) | 786, 916, 1304, 1981 |
| BsgI | GTGCAG | 2 cut(s) | 1661, 1988 |
| Bsh1236I | CGCG | 1 cut(s) | 604 |
| BshFI | GGCC | 2 cut(s) | 1100, 1785 |
| BshVI | ATCGAT | 1 cut(s) | 2048 |
| BsiHKAI | GWGCWC | 1 cut(s) | 337 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 287, 722 |
| BsmAI | GTCTC | 3 cut(s) | 1092, 1226, 1859 |
| BsmI | GAATGC | 5 cut(s) | 360, 655, 801, 1323, 1456 |
| BsnI | GGCC | 2 cut(s) | 1100, 1785 |
| Bsp1286I | GDGCHC | 1 cut(s) | 337 |
| Bsp143I | GATC | 5 cut(s) | 256, 1216, 1530, 1619, 2070 |
| Bsp19I | CCATGG | 1 cut(s) | 170 |
| BspACI | CCGC | 5 cut(s) | 513, 1110, 1280, 1295, 2107 |
| BspANI | GGCC | 2 cut(s) | 1100, 1785 |
| BspCNI | CTCAG | 8 cut(s) | 1087, 1096, 1147, 1315, 1384, 1629, 1659, 1715 |
| BspDI | ATCGAT | 1 cut(s) | 2048 |
| BspFNI | CGCG | 1 cut(s) | 604 |
| BspHI | TCATGA | 1 cut(s) | 85 |
| BspLI | GGNNCC | 1 cut(s) | 1299 |
| BspMAI | CTGCAG | 1 cut(s) | 1639 |
| BspOI | GCTAGC | 1 cut(s) | 240 |
| BspPI | GGATC | 3 cut(s) | 1211, 1525, 2065 |
| BspQI | GCTCTTC | 1 cut(s) | 282 |
| BsrI | ACTGG | 5 cut(s) | 340, 439, 693, 1608, 1786 |
| BssECI | CCNNGG | 4 cut(s) | 170, 185, 721, 1521 |
| BssMI | GATC | 5 cut(s) | 256, 1216, 1530, 1619, 2070 |
| BssNAI | GTATAC | 1 cut(s) | 1838 |
| BssT1I | CCWWGG | 3 cut(s) | 170, 185, 1521 |
| Bst1107I | GTATAC | 1 cut(s) | 1838 |
| Bst2UI | CCWGG | 2 cut(s) | 723, 1263 |
| Bst4CI | ACNGT | 1 cut(s) | 955 |
| Bst6I | CTCTTC | 4 cut(s) | 117, 282, 1803, 1875 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1975 |
| BstBAI | YACGTR | 2 cut(s) | 821, 1385 |
| BstC8I | GCNNGC | 6 cut(s) | 238, 337, 868, 1677, 2028, 2105 |
| BstDSI | CCRYGG | 1 cut(s) | 170 |
| BstF5I | GGATG | 4 cut(s) | 518, 1246, 1354, 1945 |
| BstFNI | CGCG | 1 cut(s) | 604 |
| BstHHI | GCGC | 1 cut(s) | 666 |
| BstKTI | GATC | 5 cut(s) | 259, 1219, 1533, 1622, 2073 |
| BstMAI | GTCTC | 3 cut(s) | 1092, 1226, 1859 |
| BstMBI | GATC | 5 cut(s) | 256, 1216, 1530, 1619, 2070 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1106, 1969, 1975, 2027 |
| BstNI | CCWGG | 2 cut(s) | 723, 1263 |
| BstNSI | RCATGY | 5 cut(s) | 232, 870, 1131, 1167, 1456 |
| BstSCI | CCNGG | 2 cut(s) | 721, 1261 |
| BstSFI | CTRYAG | 3 cut(s) | 264, 456, 1635 |
| BstSLI | GKGCMC | 1 cut(s) | 337 |
| BstUI | CGCG | 1 cut(s) | 604 |
| BstV1I | GCAGC | 4 cut(s) | 786, 916, 1304, 1981 |
| BstX2I | RGATCY | 3 cut(s) | 1530, 1619, 2070 |
| BstYI | RGATCY | 3 cut(s) | 1530, 1619, 2070 |
| BstZ17I | GTATAC | 1 cut(s) | 1838 |
| Bsu15I | ATCGAT | 1 cut(s) | 2048 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1392 |
| BsuRI | GGCC | 2 cut(s) | 1100, 1785 |
| BsuTUI | ATCGAT | 1 cut(s) | 2048 |
| BtgI | CCRYGG | 1 cut(s) | 170 |
| BtsCI | GGATG | 4 cut(s) | 518, 1246, 1354, 1945 |
| BtsI | GCAGTG | 1 cut(s) | 1644 |
| BtsIMutI | CAGTG | 4 cut(s) | 960, 1601, 1644, 1779 |
| Cac8I | GCNNGC | 6 cut(s) | 238, 337, 868, 1677, 2028, 2105 |
| CaiI | CAGNNNCTG | 1 cut(s) | 722 |
| CciI | TCATGA | 1 cut(s) | 85 |
| CfoI | GCGC | 1 cut(s) | 666 |
| Cfr13I | GGNCC | 1 cut(s) | 537 |
| ClaI | ATCGAT | 1 cut(s) | 2048 |
| CseI | GACGC | 1 cut(s) | 610 |
| CsiI | ACCWGGT | 1 cut(s) | 1261 |
| Csp6I | GTAC | 6 cut(s) | 510, 713, 726, 1696, 1751, 1912 |
| CviQI | GTAC | 6 cut(s) | 510, 713, 726, 1696, 1751, 1912 |
| DpnI | GATC | 5 cut(s) | 258, 1218, 1532, 1621, 2072 |
| DpnII | GATC | 5 cut(s) | 256, 1216, 1530, 1619, 2070 |
| DraI | TTTAAA | 1 cut(s) | 2044 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 946 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 946 |
| EaeI | YGGCCR | 1 cut(s) | 1783 |
| Eam1104I | CTCTTC | 4 cut(s) | 117, 282, 1803, 1875 |
| EarI | CTCTTC | 4 cut(s) | 117, 282, 1803, 1875 |
| EciI | GGCGGA | 1 cut(s) | 1269 |
| Eco130I | CCWWGG | 3 cut(s) | 170, 185, 1521 |
| Eco47I | GGWCC | 1 cut(s) | 537 |
| Eco57I | CTGAAG | 6 cut(s) | 1209, 1500, 1524, 1743, 1815, 1899 |
| Eco81I | CCTNAGG | 1 cut(s) | 1392 |
| EcoRII | CCWGG | 2 cut(s) | 721, 1261 |
| EcoT14I | CCWWGG | 3 cut(s) | 170, 185, 1521 |
| EcoT22I | ATGCAT | 1 cut(s) | 1458 |
| ErhI | CCWWGG | 3 cut(s) | 170, 185, 1521 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 542, 574 |
| FblI | GTMKAC | 3 cut(s) | 950, 1776, 1837 |
| Fnu4HI | GCNGC | 6 cut(s) | 800, 930, 1110, 1293, 1970, 2101 |
| FokI | GGATG | 4 cut(s) | 505, 1253, 1341, 1952 |
| Fsp4HI | GCNGC | 6 cut(s) | 800, 930, 1110, 1293, 1970, 2101 |
| FspBI | CTAG | 4 cut(s) | 237, 507, 1368, 1707 |
| GlaI | GCGC | 1 cut(s) | 665 |
| GluI | GCNGC | 6 cut(s) | 800, 930, 1110, 1293, 1970, 2101 |
| GsuI | CTGGAG | 2 cut(s) | 422, 1706 |
| HaeIII | GGCC | 2 cut(s) | 1100, 1785 |
| HgaI | GACGC | 1 cut(s) | 610 |
| HhaI | GCGC | 1 cut(s) | 666 |
| Hin6I | GCGC | 1 cut(s) | 664 |
| HinP1I | GCGC | 1 cut(s) | 664 |
| HincII | GTYRAC | 2 cut(s) | 951, 1729 |
| HindII | GTYRAC | 2 cut(s) | 951, 1729 |
| HindIII | AAGCTT | 5 cut(s) | 528, 587, 1588, 1673, 2019 |
| HinfI | GANTC | 9 cut(s) | 352, 765, 808, 1151, 1170, 1181, 1306, 1688, 1713 |
| HpaI | GTTAAC | 1 cut(s) | 1729 |
| HphI | GGTGA | 6 cut(s) | 489, 670, 692, 975, 2023, 2048 |
| HpyAV | CCTTC | 4 cut(s) | 532, 1123, 1356, 1374 |
| HpyCH4III | ACNGT | 1 cut(s) | 955 |
| HpyCH4IV | ACGT | 4 cut(s) | 299, 820, 1384, 1441 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1106, 1969, 1975, 2027 |
| HpySE526I | ACGT | 4 cut(s) | 299, 820, 1384, 1441 |
| HspAI | GCGC | 1 cut(s) | 664 |
| KspAI | GTTAAC | 1 cut(s) | 1729 |
| Kzo9I | GATC | 5 cut(s) | 256, 1216, 1530, 1619, 2070 |
| LguI | GCTCTTC | 1 cut(s) | 282 |
| LmnI | GCTCC | 1 cut(s) | 1297 |
| Lsp1109I | GCAGC | 4 cut(s) | 786, 916, 1304, 1981 |
| LweI | GCATC | 5 cut(s) | 148, 1153, 1231, 1965, 2086 |
| MabI | ACCWGGT | 1 cut(s) | 1261 |
| MaeI | CTAG | 4 cut(s) | 237, 507, 1368, 1707 |
| MaeII | ACGT | 4 cut(s) | 299, 820, 1384, 1441 |
| MaeIII | GTNAC | 5 cut(s) | 451, 751, 778, 908, 1385 |
| MalI | GATC | 5 cut(s) | 258, 1218, 1532, 1621, 2072 |
| MboI | GATC | 5 cut(s) | 256, 1216, 1530, 1619, 2070 |
| MfeI | CAATTG | 1 cut(s) | 2091 |
| MflI | RGATCY | 3 cut(s) | 1530, 1619, 2070 |
| MhlI | GDGCHC | 1 cut(s) | 337 |
| MlsI | TGGCCA | 1 cut(s) | 1785 |
| MluNI | TGGCCA | 1 cut(s) | 1785 |
| MlyI | GAGTC | 4 cut(s) | 1145, 1164, 1300, 1697 |
| Mox20I | TGGCCA | 1 cut(s) | 1785 |
| Mph1103I | ATGCAT | 1 cut(s) | 1458 |
| MroXI | GAANNNNTTC | 1 cut(s) | 769 |
| MscI | TGGCCA | 1 cut(s) | 1785 |
| Msp20I | TGGCCA | 1 cut(s) | 1785 |
| MspA1I | CMGCKG | 3 cut(s) | 1295, 1721, 1756 |
| MspR9I | CCNGG | 2 cut(s) | 723, 1263 |
| MunI | CAATTG | 1 cut(s) | 2091 |
| Mva1269I | GAATGC | 5 cut(s) | 360, 655, 801, 1323, 1456 |
| MvaI | CCWGG | 2 cut(s) | 723, 1263 |
| MvnI | CGCG | 1 cut(s) | 604 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1106, 1969, 1975, 2027 |
| NcoI | CCATGG | 1 cut(s) | 170 |
| NdeII | GATC | 5 cut(s) | 256, 1216, 1530, 1619, 2070 |
| NheI | GCTAGC | 1 cut(s) | 236 |
| NlaIV | GGNNCC | 1 cut(s) | 1299 |
| NmuCI | GTSAC | 3 cut(s) | 778, 908, 1385 |
| NsiI | ATGCAT | 1 cut(s) | 1458 |
| NspI | RCATGY | 5 cut(s) | 232, 870, 1131, 1167, 1456 |
| PaeI | GCATGC | 1 cut(s) | 870 |
| PagI | TCATGA | 1 cut(s) | 85 |
| PciI | ACATGT | 2 cut(s) | 228, 1127 |
| PciSI | GCTCTTC | 1 cut(s) | 282 |
| PctI | GAATGC | 5 cut(s) | 360, 655, 801, 1323, 1456 |
| PdmI | GAANNNNTTC | 1 cut(s) | 769 |
| PfeI | GAWTC | 5 cut(s) | 352, 765, 808, 1181, 1713 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 287, 722 |
| PkrI | GCNGC | 6 cut(s) | 801, 931, 1111, 1294, 1971, 2102 |
| PleI | GAGTC | 4 cut(s) | 1145, 1164, 1300, 1696 |
| PpsI | GAGTC | 4 cut(s) | 1145, 1164, 1300, 1696 |
| Ppu21I | YACGTR | 2 cut(s) | 821, 1385 |
| PscI | ACATGT | 2 cut(s) | 228, 1127 |
| PshBI | ATTAAT | 2 cut(s) | 1200, 1995 |
| Psp1406I | AACGTT | 2 cut(s) | 299, 1441 |
| Psp6I | CCWGG | 2 cut(s) | 721, 1261 |
| PspGI | CCWGG | 2 cut(s) | 721, 1261 |
| PspN4I | GGNNCC | 1 cut(s) | 1299 |
| PspPI | GGNCC | 1 cut(s) | 537 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1431, 1463 |
| PstI | CTGCAG | 1 cut(s) | 1639 |
| PstNI | CAGNNNCTG | 1 cut(s) | 722 |
| PsuI | RGATCY | 3 cut(s) | 1530, 1619, 2070 |
| PvuII | CAGCTG | 2 cut(s) | 1721, 1756 |
| RsaI | GTAC | 6 cut(s) | 511, 714, 727, 1697, 1752, 1913 |
| RsaNI | GTAC | 6 cut(s) | 510, 713, 726, 1696, 1751, 1912 |
| SalI | GTCGAC | 1 cut(s) | 949 |
| SapI | GCTCTTC | 1 cut(s) | 282 |
| SatI | GCNGC | 6 cut(s) | 800, 930, 1110, 1293, 1970, 2101 |
| Sau3AI | GATC | 5 cut(s) | 256, 1216, 1530, 1619, 2070 |
| Sau96I | GGNCC | 1 cut(s) | 537 |
| SchI | GAGTC | 4 cut(s) | 1145, 1164, 1300, 1697 |
| ScrFI | CCNGG | 2 cut(s) | 723, 1263 |
| SduI | GDGCHC | 1 cut(s) | 337 |
| SexAI | ACCWGGT | 1 cut(s) | 1261 |
| SfaNI | GCATC | 5 cut(s) | 148, 1153, 1231, 1965, 2086 |
| SfcI | CTRYAG | 3 cut(s) | 264, 456, 1635 |
| SinI | GGWCC | 1 cut(s) | 537 |
| SmlI | CTYRAG | 5 cut(s) | 221, 564, 1311, 1515, 1862 |
| SmoI | CTYRAG | 5 cut(s) | 221, 564, 1311, 1515, 1862 |
| SphI | GCATGC | 1 cut(s) | 870 |
| SsiI | CCGC | 5 cut(s) | 513, 1110, 1280, 1295, 2107 |
| SspI | AATATT | 1 cut(s) | 180 |
| SspMI | CTAG | 4 cut(s) | 237, 507, 1368, 1707 |
| StyD4I | CCNGG | 2 cut(s) | 721, 1261 |
| StyI | CCWWGG | 3 cut(s) | 170, 185, 1521 |
| TaaI | ACNGT | 1 cut(s) | 955 |
| TaiI | ACGT | 4 cut(s) | 302, 823, 1387, 1444 |
| TaqI | TCGA | 4 cut(s) | 950, 1824, 1847, 2048 |
| TatI | WGTACW | 1 cut(s) | 1750 |
| TauI | GCSGC | 1 cut(s) | 1112 |
| TfiI | GAWTC | 5 cut(s) | 352, 765, 808, 1181, 1713 |
| TscAI | CASTG | 4 cut(s) | 960, 1608, 1644, 1786 |
| TseFI | GTSAC | 3 cut(s) | 778, 908, 1385 |
| TseI | GCWGC | 5 cut(s) | 799, 929, 1292, 1969, 2100 |
| Tsp45I | GTSAC | 3 cut(s) | 778, 908, 1385 |
| TspDTI | ATGAA | 6 cut(s) | 74, 480, 827, 1263, 1338, 1956 |
| TspGWI | ACGGA | 2 cut(s) | 797, 801 |
| TspRI | CASTG | 4 cut(s) | 960, 1608, 1644, 1786 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 287, 722 |
| VneI | GTGCAC | 1 cut(s) | 333 |
| VpaK11BI | GGWCC | 1 cut(s) | 537 |
| VspI | ATTAAT | 2 cut(s) | 1200, 1995 |
| XapI | RAATTY | 7 cut(s) | 127, 209, 284, 1269, 1411, 1509, 1788 |
| XceI | RCATGY | 5 cut(s) | 232, 870, 1131, 1167, 1456 |
| XmiI | GTMKAC | 3 cut(s) | 950, 1776, 1837 |
| XmnI | GAANNNNTTC | 1 cut(s) | 769 |
| XspI | CTAG | 4 cut(s) | 237, 507, 1368, 1707 |
| Zsp2I | ATGCAT | 1 cut(s) | 1458 |