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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g26742 FvH4_3g26742 |
| malus_domestica | MD11G1175200.v1.1 |
| pyrus_communis | pycom11g15030 |
| rosa_chinensis | RchiOBHm_Chr5g0049171 |
| rosa_laevigata | RLG00000034596 |
| rosa_multiflora | Rmu_sc0001677.1_g000029 |
| rosa_roxburghii | Rroxscaffold_1G00032560 |
| rosa_rugosa | Rorug05G0244500 Rorug05G0244600 Rorug05G0244700 Rorug05G0244800 Rorug05G0244900 |
| rosa_samantha | Rh5AG323200 Rh5BG333700 Rh5CG358800 Rh5DG345200 |
| rosa_wichuraiana | Rw5G030510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 195, 236 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 537 |
| AccBSI | CCGCTC | 1 cut(s) | 2274 |
| AccI | GTMKAC | 1 cut(s) | 2691 |
| AccIII | TCCGGA | 1 cut(s) | 580 |
| AciI | CCGC | 6 cut(s) | 214, 365, 1664, 2123, 2272, 2720 |
| AclWI | GGATC | 3 cut(s) | 2440, 2907, 2980 |
| AcoI | YGGCCR | 1 cut(s) | 2542 |
| AcsI | RAATTY | 9 cut(s) | 106, 254, 1128, 1215, 1397, 1967, 2154, 2651, 2830 |
| AcuI | CTGAAG | 5 cut(s) | 98, 243, 2085, 2415, 2658 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 79, 177, 310, 1822, 2335 |
| AflII | CTTAAG | 1 cut(s) | 1547 |
| AflIII | ACRYGT | 1 cut(s) | 1146 |
| AjnI | CCWGG | 4 cut(s) | 1140, 1180, 1353, 2580 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2501, 2533 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 792, 824 |
| Alw21I | GWGCWC | 3 cut(s) | 1735, 1932, 2880 |
| Alw26I | GTCTC | 1 cut(s) | 2384 |
| Alw44I | GTGCAC | 1 cut(s) | 1928 |
| AlwI | GGATC | 3 cut(s) | 2440, 2907, 2980 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2890 |
| Ama87I | CYCGRG | 1 cut(s) | 2328 |
| Aor13HI | TCCGGA | 1 cut(s) | 580 |
| AoxI | GGCC | 7 cut(s) | 290, 658, 2192, 2439, 2542, 2619, 2943 |
| ApaLI | GTGCAC | 1 cut(s) | 1928 |
| ApeKI | GCWGC | 2 cut(s) | 431, 2890 |
| ApoI | RAATTY | 9 cut(s) | 106, 254, 1128, 1215, 1397, 1967, 2154, 2651, 2830 |
| AseI | ATTAAT | 1 cut(s) | 1944 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 228, 1473 |
| AspS9I | GGNCC | 9 cut(s) | 155, 313, 482, 539, 658, 800, 872, 986, 1522 |
| AsuHPI | GGTGA | 5 cut(s) | 794, 2223, 2449, 2596, 2938 |
| AsuII | TTCGAA | 2 cut(s) | 601, 981 |
| AvaI | CYCGRG | 1 cut(s) | 2328 |
| AvaII | GGWCC | 8 cut(s) | 155, 313, 482, 539, 800, 872, 986, 1522 |
| BaeGI | GKGCMC | 2 cut(s) | 1255, 1932 |
| BalI | TGGCCA | 1 cut(s) | 2544 |
| BanII | GRGCYC | 1 cut(s) | 1735 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2594, 2626 |
| BauI | CACGAG | 1 cut(s) | 1479 |
| Bbv12I | GWGCWC | 3 cut(s) | 1735, 1932, 2880 |
| BbvI | GCAGC | 2 cut(s) | 418, 2877 |
| BccI | CCATC | 9 cut(s) | 410, 530, 578, 1083, 1506, 1670, 2000, 2367, 2959 |
| BceAI | ACGGC | 2 cut(s) | 772, 1155 |
| BciT130I | CCWGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| BciVI | GTATCC | 1 cut(s) | 2341 |
| BclI | TGATCA | 1 cut(s) | 1483 |
| BcoDI | GTCTC | 1 cut(s) | 2384 |
| BfaI | CTAG | 4 cut(s) | 521, 777, 1422, 2148 |
| BfrI | CTTAAG | 1 cut(s) | 1547 |
| BfuI | GTATCC | 1 cut(s) | 2341 |
| BglII | AGATCT | 1 cut(s) | 505 |
| BisI | GCNGC | 2 cut(s) | 432, 2891 |
| BlpI | GCTNAGC | 1 cut(s) | 1983 |
| BlsI | GCNGC | 2 cut(s) | 433, 2892 |
| BmcAI | AGTACT | 4 cut(s) | 117, 426, 2014, 2086 |
| Bme1390I | CCNGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| Bme18I | GGWCC | 8 cut(s) | 155, 313, 482, 539, 800, 872, 986, 1522 |
| BmeT110I | CYCGRG | 1 cut(s) | 2328 |
| BmgT120I | GGNCC | 9 cut(s) | 155, 313, 482, 539, 658, 800, 872, 986, 1522 |
| BmiI | GGNNCC | 9 cut(s) | 314, 315, 484, 541, 802, 1662, 1849, 2266, 2629 |
| BmrFI | CCNGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| BmrI | ACTGGG | 4 cut(s) | 538, 921, 1602, 2163 |
| BmsI | GCATC | 7 cut(s) | 541, 1066, 1549, 2116, 2362, 2389, 2754 |
| BmuI | ACTGGG | 4 cut(s) | 538, 921, 1602, 2163 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2002, 2034 |
| BpmI | CTGGAG | 1 cut(s) | 2571 |
| Bpu10I | CCTNAGC | 2 cut(s) | 210, 2091 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1983 |
| Bpu14I | TTCGAA | 2 cut(s) | 601, 981 |
| BpuEI | CTTGAG | 7 cut(s) | 1382, 1735, 2184, 2415, 2700, 2798, 2894 |
| Bsa29I | ATCGAT | 1 cut(s) | 2963 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2352 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 6 cut(s) | 51, 280, 317, 759, 1843, 2436 |
| BsaWI | WCCGGW | 1 cut(s) | 580 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 79, 177, 310, 1822, 2335 |
| Bse118I | RCCGGY | 1 cut(s) | 1932 |
| Bse1I | ACTGG | 8 cut(s) | 544, 704, 927, 1129, 1608, 2169, 2554, 2676 |
| Bse3DI | GCAATG | 2 cut(s) | 28, 2058 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2352 |
| BseAI | TCCGGA | 1 cut(s) | 580 |
| BseBI | CCWGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| BseCI | ATCGAT | 1 cut(s) | 2963 |
| BseDI | CCNNGG | 6 cut(s) | 51, 280, 317, 759, 1843, 2436 |
| BseJI | GATNNNNATC | 1 cut(s) | 2352 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 79, 177, 310, 1822, 2335 |
| BseMI | GCAATG | 2 cut(s) | 28, 2058 |
| BseMII | CTCAG | 6 cut(s) | 981, 1118, 1311, 1812, 1991, 2106 |
| BseNI | ACTGG | 8 cut(s) | 544, 704, 927, 1129, 1608, 2169, 2554, 2676 |
| BseRI | GAGGAG | 5 cut(s) | 607, 2007, 2154, 2187, 2837 |
| BseSI | GKGCMC | 2 cut(s) | 1255, 1932 |
| BseXI | GCAGC | 2 cut(s) | 418, 2877 |
| BsgI | GTGCAG | 1 cut(s) | 417 |
| BshFI | GGCC | 7 cut(s) | 292, 660, 2194, 2441, 2544, 2621, 2945 |
| BshVI | ATCGAT | 1 cut(s) | 2963 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1735, 1932, 2880 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2328 |
| BsiSI | CCGG | 2 cut(s) | 581, 1933 |
| BsiWI | CGTACG | 1 cut(s) | 789 |
| BslFI | GGGAC | 4 cut(s) | 299, 468, 525, 909 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 79, 177, 310, 1822, 2335 |
| BsmAI | GTCTC | 1 cut(s) | 2384 |
| BsmFI | GGGAC | 4 cut(s) | 299, 468, 525, 909 |
| BsmI | GAATGC | 2 cut(s) | 597, 2320 |
| BsnI | GGCC | 7 cut(s) | 292, 660, 2194, 2441, 2544, 2621, 2945 |
| BsoBI | CYCGRG | 1 cut(s) | 2328 |
| Bsp119I | TTCGAA | 2 cut(s) | 601, 981 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1255, 1735, 1932, 2880 |
| Bsp13I | TCCGGA | 1 cut(s) | 580 |
| Bsp143I | GATC | 9 cut(s) | 337, 505, 1095, 1174, 1483, 1615, 2445, 2899, 2985 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1983 |
| BspACI | CCGC | 6 cut(s) | 214, 365, 1664, 2123, 2272, 2720 |
| BspANI | GGCC | 7 cut(s) | 292, 660, 2194, 2441, 2544, 2621, 2945 |
| BspCNI | CTCAG | 6 cut(s) | 982, 1117, 1312, 1813, 1990, 2107 |
| BspDI | ATCGAT | 1 cut(s) | 2963 |
| BspEI | TCCGGA | 1 cut(s) | 580 |
| BspHI | TCATGA | 2 cut(s) | 1513, 2284 |
| BspLI | GGNNCC | 9 cut(s) | 314, 315, 484, 541, 802, 1662, 1849, 2266, 2629 |
| BspPI | GGATC | 3 cut(s) | 2440, 2907, 2980 |
| BspQI | GCTCTTC | 2 cut(s) | 669, 2766 |
| BspT104I | TTCGAA | 2 cut(s) | 601, 981 |
| BspTI | CTTAAG | 1 cut(s) | 1547 |
| BsrBI | CCGCTC | 1 cut(s) | 2274 |
| BsrDI | GCAATG | 2 cut(s) | 28, 2058 |
| BsrFI | RCCGGY | 1 cut(s) | 1932 |
| BsrI | ACTGG | 8 cut(s) | 544, 704, 927, 1129, 1608, 2169, 2554, 2676 |
| BssAI | RCCGGY | 1 cut(s) | 1932 |
| BssECI | CCNNGG | 6 cut(s) | 51, 280, 317, 759, 1843, 2436 |
| BssMI | GATC | 9 cut(s) | 337, 505, 1095, 1174, 1483, 1615, 2445, 2899, 2985 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssSI | CACGAG | 1 cut(s) | 1479 |
| BssT1I | CCWWGG | 5 cut(s) | 51, 317, 759, 1843, 2436 |
| Bst2BI | CACGAG | 1 cut(s) | 1479 |
| Bst2UI | CCWGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| Bst4CI | ACNGT | 4 cut(s) | 281, 1330, 2084, 2632 |
| Bst6I | CTCTTC | 4 cut(s) | 219, 669, 1035, 2766 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstAFI | CTTAAG | 1 cut(s) | 1547 |
| BstBI | TTCGAA | 2 cut(s) | 601, 981 |
| BstC8I | GCNNGC | 8 cut(s) | 1156, 1840, 1989, 2592, 2739, 2743, 2870, 2943 |
| BstDSI | CCRYGG | 1 cut(s) | 280 |
| BstEII | GGTNACC | 1 cut(s) | 180 |
| BstKTI | GATC | 9 cut(s) | 340, 508, 1098, 1177, 1486, 1618, 2448, 2902, 2988 |
| BstMAI | GTCTC | 1 cut(s) | 2384 |
| BstMBI | GATC | 9 cut(s) | 337, 505, 1095, 1174, 1483, 1615, 2445, 2899, 2985 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 560, 1988, 2135, 2942 |
| BstNI | CCWGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| BstNSI | RCATGY | 1 cut(s) | 1150 |
| BstPI | GGTNACC | 1 cut(s) | 180 |
| BstSCI | CCNGG | 4 cut(s) | 1140, 1180, 1353, 2580 |
| BstSLI | GKGCMC | 2 cut(s) | 1255, 1932 |
| BstV1I | GCAGC | 2 cut(s) | 418, 2877 |
| BstX2I | RGATCY | 3 cut(s) | 505, 2445, 2985 |
| BstYI | RGATCY | 3 cut(s) | 505, 2445, 2985 |
| Bsu15I | ATCGAT | 1 cut(s) | 2963 |
| BsuI | GTATCC | 1 cut(s) | 2341 |
| BsuRI | GGCC | 7 cut(s) | 292, 660, 2194, 2441, 2544, 2621, 2945 |
| BsuTUI | ATCGAT | 1 cut(s) | 2963 |
| BtgI | CCRYGG | 1 cut(s) | 280 |
| BtsIMutI | CAGTG | 4 cut(s) | 93, 1335, 2176, 2669 |
| Cac8I | GCNNGC | 8 cut(s) | 1156, 1840, 1989, 2592, 2739, 2743, 2870, 2943 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2890 |
| CciI | TCATGA | 2 cut(s) | 1513, 2284 |
| Cfr10I | RCCGGY | 1 cut(s) | 1932 |
| Cfr13I | GGNCC | 9 cut(s) | 155, 313, 482, 539, 658, 800, 872, 986, 1522 |
| ClaI | ATCGAT | 1 cut(s) | 2963 |
| CseI | GACGC | 2 cut(s) | 44, 50 |
| CviAII | CATG | 9 cut(s) | 479, 1057, 1147, 1514, 1808, 2008, 2285, 2482, 2912 |
| DpnI | GATC | 9 cut(s) | 339, 507, 1097, 1176, 1485, 1617, 2447, 2901, 2987 |
| DpnII | GATC | 9 cut(s) | 337, 505, 1095, 1174, 1483, 1615, 2445, 2899, 2985 |
| DraI | TTTAAA | 1 cut(s) | 2959 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 537 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 537 |
| EaeI | YGGCCR | 1 cut(s) | 2542 |
| Eam1104I | CTCTTC | 4 cut(s) | 219, 669, 1035, 2766 |
| EarI | CTCTTC | 4 cut(s) | 219, 669, 1035, 2766 |
| Ecl136II | GAGCTC | 1 cut(s) | 1733 |
| Eco130I | CCWWGG | 5 cut(s) | 51, 317, 759, 1843, 2436 |
| Eco24I | GRGCYC | 1 cut(s) | 1735 |
| Eco47I | GGWCC | 8 cut(s) | 155, 313, 482, 539, 800, 872, 986, 1522 |
| Eco53kI | GAGCTC | 1 cut(s) | 1733 |
| Eco57I | CTGAAG | 5 cut(s) | 98, 243, 2085, 2415, 2658 |
| Eco88I | CYCGRG | 1 cut(s) | 2328 |
| Eco91I | GGTNACC | 1 cut(s) | 180 |
| EcoICRI | GAGCTC | 1 cut(s) | 1733 |
| EcoO109I | RGGNCCY | 5 cut(s) | 155, 313, 658, 800, 986 |
| EcoO65I | GGTNACC | 1 cut(s) | 180 |
| EcoRI | GAATTC | 1 cut(s) | 1967 |
| EcoRII | CCWGG | 4 cut(s) | 1140, 1180, 1353, 2580 |
| EcoT14I | CCWWGG | 5 cut(s) | 51, 317, 759, 1843, 2436 |
| EcoT22I | ATGCAT | 1 cut(s) | 2913 |
| EcoT38I | GRGCYC | 1 cut(s) | 1735 |
| ErhI | CCWWGG | 5 cut(s) | 51, 317, 759, 1843, 2436 |
| FaeI | CATG | 9 cut(s) | 482, 1060, 1150, 1517, 1811, 2011, 2288, 2485, 2915 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 216, 248 |
| FaqI | GGGAC | 4 cut(s) | 299, 468, 525, 909 |
| FatI | CATG | 9 cut(s) | 478, 1056, 1146, 1513, 1807, 2007, 2284, 2481, 2911 |
| FauI | CCCGC | 1 cut(s) | 358 |
| FbaI | TGATCA | 1 cut(s) | 1483 |
| FblI | GTMKAC | 1 cut(s) | 2691 |
| Fnu4HI | GCNGC | 2 cut(s) | 432, 2891 |
| FriOI | GRGCYC | 1 cut(s) | 1735 |
| Fsp4HI | GCNGC | 2 cut(s) | 432, 2891 |
| FspBI | CTAG | 4 cut(s) | 521, 777, 1422, 2148 |
| GluI | GCNGC | 2 cut(s) | 432, 2891 |
| GsuI | CTGGAG | 1 cut(s) | 2571 |
| HaeIII | GGCC | 7 cut(s) | 292, 660, 2194, 2441, 2544, 2621, 2945 |
| HapII | CCGG | 2 cut(s) | 581, 1933 |
| HgaI | GACGC | 2 cut(s) | 44, 50 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin1II | CATG | 9 cut(s) | 482, 1060, 1150, 1517, 1811, 2011, 2288, 2485, 2915 |
| HincII | GTYRAC | 2 cut(s) | 450, 1584 |
| HindII | GTYRAC | 2 cut(s) | 450, 1584 |
| HindIII | AAGCTT | 6 cut(s) | 1156, 1508, 2141, 2588, 2739, 2870 |
| HpaII | CCGG | 2 cut(s) | 581, 1933 |
| HphI | GGTGA | 5 cut(s) | 794, 2223, 2449, 2596, 2938 |
| Hpy166II | GTNNAC | 7 cut(s) | 450, 1584, 1630, 1721, 1930, 2498, 2692 |
| Hpy8I | GTNNAC | 7 cut(s) | 450, 1584, 1630, 1721, 1930, 2498, 2692 |
| HpyAV | CCTTC | 4 cut(s) | 73, 953, 977, 2656 |
| HpyCH4III | ACNGT | 4 cut(s) | 281, 1330, 2084, 2632 |
| HpyCH4IV | ACGT | 1 cut(s) | 922 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 560, 1988, 2135, 2942 |
| HpySE526I | ACGT | 1 cut(s) | 922 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| Hsp92II | CATG | 9 cut(s) | 482, 1060, 1150, 1517, 1811, 2011, 2288, 2485, 2915 |
| KflI | GGGWCCC | 1 cut(s) | 313 |
| Kpn2I | TCCGGA | 1 cut(s) | 580 |
| Ksp22I | TGATCA | 1 cut(s) | 1483 |
| Kzo9I | GATC | 9 cut(s) | 337, 505, 1095, 1174, 1483, 1615, 2445, 2899, 2985 |
| LguI | GCTCTTC | 2 cut(s) | 669, 2766 |
| LmnI | GCTCC | 6 cut(s) | 82, 1291, 1357, 1666, 2279, 2407 |
| Lsp1109I | GCAGC | 2 cut(s) | 418, 2877 |
| LweI | GCATC | 7 cut(s) | 541, 1066, 1549, 2116, 2362, 2389, 2754 |
| MaeI | CTAG | 4 cut(s) | 521, 777, 1422, 2148 |
| MaeII | ACGT | 1 cut(s) | 922 |
| MaeIII | GTNAC | 8 cut(s) | 180, 664, 710, 742, 815, 2068, 2203, 2229 |
| MalI | GATC | 9 cut(s) | 339, 507, 1097, 1176, 1485, 1617, 2447, 2901, 2987 |
| MbiI | CCGCTC | 1 cut(s) | 2274 |
| MboI | GATC | 9 cut(s) | 337, 505, 1095, 1174, 1483, 1615, 2445, 2899, 2985 |
| MfeI | CAATTG | 1 cut(s) | 2993 |
| MflI | RGATCY | 3 cut(s) | 505, 2445, 2985 |
| MhlI | GDGCHC | 4 cut(s) | 1255, 1735, 1932, 2880 |
| MlsI | TGGCCA | 1 cut(s) | 2544 |
| MluNI | TGGCCA | 1 cut(s) | 2544 |
| MlyI | GAGTC | 2 cut(s) | 339, 1589 |
| MmeI | TCCRAC | 2 cut(s) | 2859, 3013 |
| Mox20I | TGGCCA | 1 cut(s) | 2544 |
| Mph1103I | ATGCAT | 1 cut(s) | 2913 |
| MroI | TCCGGA | 1 cut(s) | 580 |
| MroXI | GAANNNNTTC | 2 cut(s) | 228, 1473 |
| MscI | TGGCCA | 1 cut(s) | 2544 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2370, 2750 |
| Msp20I | TGGCCA | 1 cut(s) | 2544 |
| MspA1I | CMGCKG | 1 cut(s) | 2183 |
| MspCI | CTTAAG | 1 cut(s) | 1547 |
| MspI | CCGG | 2 cut(s) | 581, 1933 |
| MspR9I | CCNGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| MunI | CAATTG | 1 cut(s) | 2993 |
| Mva1269I | GAATGC | 2 cut(s) | 597, 2320 |
| MvaI | CCWGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 560, 1988, 2135, 2942 |
| NdeII | GATC | 9 cut(s) | 337, 505, 1095, 1174, 1483, 1615, 2445, 2899, 2985 |
| NlaIII | CATG | 9 cut(s) | 482, 1060, 1150, 1517, 1811, 2011, 2288, 2485, 2915 |
| NlaIV | GGNNCC | 9 cut(s) | 314, 315, 484, 541, 802, 1662, 1849, 2266, 2629 |
| NmeAIII | GCCGAG | 1 cut(s) | 2170 |
| NmuCI | GTSAC | 2 cut(s) | 664, 2229 |
| NsiI | ATGCAT | 1 cut(s) | 2913 |
| NspI | RCATGY | 1 cut(s) | 1150 |
| NspV | TTCGAA | 2 cut(s) | 601, 981 |
| PagI | TCATGA | 2 cut(s) | 1513, 2284 |
| PciI | ACATGT | 1 cut(s) | 1146 |
| PciSI | GCTCTTC | 2 cut(s) | 669, 2766 |
| PctI | GAATGC | 2 cut(s) | 597, 2320 |
| PdmI | GAANNNNTTC | 2 cut(s) | 228, 1473 |
| Pfl23II | CGTACG | 1 cut(s) | 789 |
| PfoI | TCCNGGA | 2 cut(s) | 1140, 1353 |
| PkrI | GCNGC | 2 cut(s) | 433, 2892 |
| PleI | GAGTC | 2 cut(s) | 338, 1588 |
| PpsI | GAGTC | 2 cut(s) | 338, 1588 |
| PpuMI | RGGWCCY | 4 cut(s) | 155, 313, 800, 986 |
| PscI | ACATGT | 1 cut(s) | 1146 |
| PshBI | ATTAAT | 1 cut(s) | 1944 |
| PsiI | TTATAA | 2 cut(s) | 195, 236 |
| Psp124BI | GAGCTC | 1 cut(s) | 1735 |
| Psp5II | RGGWCCY | 4 cut(s) | 155, 313, 800, 986 |
| Psp6I | CCWGG | 4 cut(s) | 1140, 1180, 1353, 2580 |
| PspEI | GGTNACC | 1 cut(s) | 180 |
| PspGI | CCWGG | 4 cut(s) | 1140, 1180, 1353, 2580 |
| PspLI | CGTACG | 1 cut(s) | 789 |
| PspN4I | GGNNCC | 9 cut(s) | 314, 315, 484, 541, 802, 1662, 1849, 2266, 2629 |
| PspPI | GGNCC | 9 cut(s) | 155, 313, 482, 539, 658, 800, 872, 986, 1522 |
| PspPPI | RGGWCCY | 4 cut(s) | 155, 313, 800, 986 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2890 |
| PsuI | RGATCY | 3 cut(s) | 505, 2445, 2985 |
| PvuII | CAGCTG | 1 cut(s) | 2183 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2370, 2750 |
| SacI | GAGCTC | 1 cut(s) | 1735 |
| SapI | GCTCTTC | 2 cut(s) | 669, 2766 |
| SatI | GCNGC | 2 cut(s) | 432, 2891 |
| Sau3AI | GATC | 9 cut(s) | 337, 505, 1095, 1174, 1483, 1615, 2445, 2899, 2985 |
| Sau96I | GGNCC | 9 cut(s) | 155, 313, 482, 539, 658, 800, 872, 986, 1522 |
| ScaI | AGTACT | 4 cut(s) | 117, 426, 2014, 2086 |
| SchI | GAGTC | 2 cut(s) | 339, 1589 |
| ScrFI | CCNGG | 4 cut(s) | 1142, 1182, 1355, 2582 |
| SduI | GDGCHC | 4 cut(s) | 1255, 1735, 1932, 2880 |
| SfaNI | GCATC | 7 cut(s) | 541, 1066, 1549, 2116, 2362, 2389, 2754 |
| SfuI | TTCGAA | 2 cut(s) | 601, 981 |
| SinI | GGWCC | 8 cut(s) | 155, 313, 482, 539, 800, 872, 986, 1522 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2370, 2750 |
| SmlI | CTYRAG | 8 cut(s) | 1361, 1547, 1714, 2199, 2430, 2715, 2777, 2873 |
| SmoI | CTYRAG | 8 cut(s) | 1361, 1547, 1714, 2199, 2430, 2715, 2777, 2873 |
| SsiI | CCGC | 6 cut(s) | 214, 365, 1664, 2123, 2272, 2720 |
| SspMI | CTAG | 4 cut(s) | 521, 777, 1422, 2148 |
| SstI | GAGCTC | 1 cut(s) | 1735 |
| StyD4I | CCNGG | 4 cut(s) | 1140, 1180, 1353, 2580 |
| StyI | CCWWGG | 5 cut(s) | 51, 317, 759, 1843, 2436 |
| TaaI | ACNGT | 4 cut(s) | 281, 1330, 2084, 2632 |
| TaiI | ACGT | 1 cut(s) | 925 |
| TaqI | TCGA | 7 cut(s) | 131, 333, 601, 981, 1087, 1618, 2963 |
| TatI | WGTACW | 5 cut(s) | 115, 424, 1627, 2012, 2084 |
| TscAI | CASTG | 4 cut(s) | 100, 1335, 2176, 2676 |
| TseFI | GTSAC | 2 cut(s) | 664, 2229 |
| TseI | GCWGC | 2 cut(s) | 431, 2890 |
| Tsp45I | GTSAC | 2 cut(s) | 664, 2229 |
| TspGWI | ACGGA | 2 cut(s) | 2515, 2852 |
| TspRI | CASTG | 4 cut(s) | 100, 1335, 2176, 2676 |
| Vha464I | CTTAAG | 1 cut(s) | 1547 |
| VneI | GTGCAC | 1 cut(s) | 1928 |
| VpaK11BI | GGWCC | 8 cut(s) | 155, 313, 482, 539, 800, 872, 986, 1522 |
| VspI | ATTAAT | 1 cut(s) | 1944 |
| XapI | RAATTY | 9 cut(s) | 106, 254, 1128, 1215, 1397, 1967, 2154, 2651, 2830 |
| XceI | RCATGY | 1 cut(s) | 1150 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 757, 2467, 2621 |
| XmiI | GTMKAC | 1 cut(s) | 2691 |
| XmnI | GAANNNNTTC | 2 cut(s) | 228, 1473 |
| XspI | CTAG | 4 cut(s) | 521, 777, 1422, 2148 |
| ZrmI | AGTACT | 4 cut(s) | 117, 426, 2014, 2086 |
| Zsp2I | ATGCAT | 1 cut(s) | 2913 |