Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

20969475 .. 20975134

Gene Structure 5660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2190 bp

ATGGGCGCCCATAGGCCGTGTCTTCAGGTGAGAACCCTCACCACCTTCACACAACAGCACCCAGTACTTTTTCACTCTCACAGACCCCATTCTATATCTTCTTCCCCATCATCAAACCACTCCTTGGAAAATGGTGTTACACTCGAGGCTTCTTCTCTGTCAGGTTCTCTTTTGGTCGAGAAGCTACTGTTGGGTTTGAAGCAAGGTAATCTCAATTCTTTGCGTAACTCTCTGTTTCAGTTAAACCCACTTGTTGTAGTTGAACTTGTTCACCGCTGCCGCGACAATTTGCCAGCGGGTCTGAAACTCGTTGACTTGATAATGGTAAACTGTCCGAATCTGAAGCACTCGTCACAGTCTCTGAGTGCAATGATTCACATTTTGGTGAGGGCCCGAAGGATTTCGGATGCCCAAGCTTTAATGCTTAGAATGGTTAGGAAGAGTGGCGTCTCCCGTGTTGAAATAGTTGAGTCTTTGGTTGGAACCTGCGACAGTTCTGGCTTGGTTTTTGACTTGTTGGTTAGGACTTATGTGCAGGCTAGGAAGTTGAGAGAAGGGTTCGAGGCGTTTAAGACACTTAGGAGCAAGGGATTATGTGTTTCGATAAATGTTGGTAATAGTCTTCTTGGTGGACTTGTGAAGGTTGGGTGGGTAGATTTGGCCTGGCAAGTGTATGGGGAAGTTGTTAGCGGTGGGGTTCAGGTGAATGTGTATACACTAAACATTATGGTTAATGCCTTGTGTAAAGATGGTAAAATCGATAAGGTTAAGTCGTTCATATCAGACATGGCTGAGAAGGGGGTTTCTGCAGATATTGTGACATATAATACTCTAATCAATGCGTATTGTCGTGAAGGGCTCGTAGAAGAAGCTTTTGAGTTAAAAAACTCGATGGCTTCTAAGGGTTTGAGACCTGAGGTTTTCACATACAATGCTATCATGAATGGGTTGTGTAGGGTAGGAAATTATGCAAGAGCAAAGGAAGTTTTGTATGAGATTTTACAGAATGGATTAAATCCTGATACTACTACGTTTAATACACTGCTGGTTGAGAGTTGTAGAAAAGATAATATTTCAGAGGCTGAAGGAATTTTCCATGAAATGTCATGTAGAGGTGTTGTTCCTGATTTAATCAGCTTCAGTTCAGTAATTGGGGTGCTTTCAAGGAATGGACATAGTGATCATGCACTATTATATTTTCAAGATATGAAAACTGCAGGCTTGGTTCCAGATAATGTGATCTATACTATCCTTATAGATGGATATTGTAGAAATGGTAAGGTGTTAGAGGCGTTGAAGTTGCGGGATGAAATGCTTGAGCAAGGCTGCGTGGTGGATGTTATCACCTTCAATACTATATTAAATGGACTTTGTCGGGAGAAGATGCTTGCTGATGCAGAGAAACTCTTCAATGAAATGGTGGAAAGGGGTGTCTTTCCAGATTTTTATACTTTCACAACACTTATTCATGGTTATTGTAAAACCGGGAATATGACTAAATCCTTAAGTTTGTTTGAGGCAATGACTAGCAGAAATATCAAGCCTGACATTGTCACATACAACACATTGATTGATGGGTTCTGCAAAGTAGGTGGCATGGATAAAGCTAAGGAGCTTTGGAGTGACATGATTTCTAGAAGAATAGTCCCTACTTGCATTTCATATGGCATTCTTATCAATGGATTCTGTAGCACGGGACTTGTCCATGAGGCGCTACGTTTGTGGGACCAGATGATTGAAGGAGGTATCAAACCCACCTTAGTAACTTGTAACACTGTCATAAAGGGCTATAGCCGCTCTGGTGACACAGAAAAGGCATATGAGTTCTTAGCCAAAATGATTTCAAAAGGAATTGTTCCTGATAGTATTACTTACAACACTCTGGTTAATGGATATGTAAAAGAAGACAATCTGGAGAAAGCCTTTTTTTCAGTTAAGGAGATGGAAAAGCAAGGACTACTGCCAGATGTGATTACATACAATGTCATTCTTTATGGGTTTTGTAGACAAGGTAGATTGAATGAAGCTGAGTTAGTTTTGCGAAAGATGATTGAGAGAGGTGTAAATCCTGATAGATCCACTTATACATCATTGATAAATGGACATGTGACCCAGGACAATTTGAGGGAGGCATTCCGCTACCATGATGAAATGCTGCAGAGGGGATTTGTACCAGATGATGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

730

Amino Acids

81.26

Weight (kDa)

7.2

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	206 - 249	3.2e-09	PPR repeat family
PPR_long	PF17177	219 - 336	1.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	226 - 282	1.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	239 - 275	9.1e-07	PPR repeat family
PPR_3	PF13812	260 - 315	1.9e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	263 - 367	1.9e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	266 - 298	1.2e-13	PPR repeat
PPR_2	PF13041	271 - 319	4.5e-19	PPR repeat family
PPR	PF01535	273 - 303	2e-09	PPR repeat
PPR_3	PF13812	294 - 349	8.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	301 - 330	1.1e-07	PPR repeat
PPR_2	PF13041	305 - 353	1.5e-10	PPR repeat family
PPR_3	PF13812	329 - 387	9.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	336 - 369	5.8e-06	PPR repeat
PPR_2	PF13041	340 - 387	3.2e-09	PPR repeat family
PPR_3	PF13812	400 - 455	1.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	407 - 438	5.1e-13	PPR repeat
PPR_2	PF13041	410 - 459	1.4e-17	PPR repeat family
PPR	PF01535	413 - 443	9.7e-10	PPR repeat
PPR_long	PF17177	423 - 559	1.2e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	442 - 474	1.8e-12	PPR repeat
PPR_2	PF13041	446 - 494	1.3e-19	PPR repeat family
PPR	PF01535	448 - 478	6.3e-08	PPR repeat
PPR_1	PF12854	476 - 508	1.5e-09	PPR repeat
PPR	PF01535	483 - 513	3.2e-07	PPR repeat
PPR_2	PF13041	484 - 529	3.9e-17	PPR repeat family
PPR_3	PF13812	503 - 561	4.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	511 - 543	5.6e-13	PPR repeat
PPR_2	PF13041	515 - 563	1.4e-17	PPR repeat family
PPR	PF01535	518 - 548	2.6e-08	PPR repeat
PPR_1	PF12854	548 - 578	5.2e-10	PPR repeat
PPR	PF01535	553 - 583	5.5e-07	PPR repeat
PPR_2	PF13041	554 - 591	3.6e-08	PPR repeat family
PPR_long	PF17177	568 - 705	1.5e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	574 - 634	2.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	582 - 613	7.1e-06	PPR repeat
PPR_2	PF13041	585 - 634	1.5e-15	PPR repeat family
PPR	PF01535	588 - 618	2.2e-07	PPR repeat
PPR_3	PF13812	611 - 664	3.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	616 - 649	2.3e-07	PPR repeat
PPR_2	PF13041	620 - 669	2.1e-15	PPR repeat family
PPR_3	PF13812	645 - 700	2.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	652 - 683	6.8e-12	PPR repeat
PPR_2	PF13041	655 - 702	2.7e-15	PPR repeat family
PPR	PF01535	658 - 688	6.7e-07	PPR repeat
PPR_2	PF13041	694 - 727	4.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	494
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	1797
AccI	GTMKAC	2 cut(s)	713, 2005
AccII	CGCG	1 cut(s)	282
AciI	CCGC	7 cut(s)	274, 280, 296, 690, 1303, 1795, 2137
AclWI	GGATC	1 cut(s)	2070
AcsI	RAATTY	2 cut(s)	1089, 2183
AcuI	CTGAAG	4 cut(s)	8, 362, 1104, 1123
AcyI	GRCGYC	2 cut(s)	6, 447
AfaI	GTAC	2 cut(s)	66, 2172
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflII	CTTAAG	1 cut(s)	1504
AflIII	ACRYGT	1 cut(s)	2104
AjnI	CCWGG	2 cut(s)	662, 2112
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	7 cut(s)	184, 416, 872, 1137, 1607, 1615, 2027
AluI	AGCT	7 cut(s)	184, 416, 872, 1137, 1607, 1615, 2027
Alw26I	GTCTC	3 cut(s)	363, 454, 904
AlwI	GGATC	1 cut(s)	2070
AlwNI	CAGNNNCTG	2 cut(s)	361, 1082
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	14, 390, 660
ApaI	GGGCCC	1 cut(s)	394
ApeKI	GCWGC	3 cut(s)	276, 1326, 2155
ApoI	RAATTY	2 cut(s)	1089, 2183
Asp700I	GAANNNNTTC	3 cut(s)	267, 400, 1406
AspLEI	GCGC	2 cut(s)	8, 1714
AspS9I	GGNCC	3 cut(s)	390, 391, 1726
AsuC2I	CCSGG	1 cut(s)	1486
AsuHPI	GGTGA	7 cut(s)	31, 40, 263, 397, 715, 1336, 1814
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	1726
AxyI	CCTNAGG	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	394, 861
BbsI	GAAGAC	3 cut(s)	14, 614, 1911
BbvI	GCAGC	3 cut(s)	263, 1313, 2142
BccI	CCATC	6 cut(s)	115, 743, 886, 1253, 1568, 1936
BciT130I	CCWGG	2 cut(s)	664, 2114
BclI	TGATCA	1 cut(s)	1180
BcnI	CCSGG	1 cut(s)	1486
BcoDI	GTCTC	3 cut(s)	363, 454, 904
BfaI	CTAG	4 cut(s)	540, 1527, 1635, 2188
BfmI	CTRYAG	5 cut(s)	807, 1215, 1687, 1789, 2156
BfoI	RGCGCY	2 cut(s)	9, 1715
BfrI	CTTAAG	1 cut(s)	1504
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	5 cut(s)	277, 280, 1327, 1795, 2156
BlsI	GCNGC	5 cut(s)	278, 281, 1328, 1796, 2157
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	3 cut(s)	664, 1486, 2114
Bme18I	GGWCC	1 cut(s)	1726
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	390, 391, 1726
BmiI	GGNNCC	5 cut(s)	7, 392, 484, 1227, 1727
BmrFI	CCNGG	3 cut(s)	664, 1486, 2114
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	3 cut(s)	397, 1374, 1384
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	3 cut(s)	14, 614, 1911
BpmI	CTGGAG	1 cut(s)	1934
Bpu10I	CCTNAGC	1 cut(s)	1608
BpuEI	CTTGAG	1 cut(s)	1337
BpuMI	CCSGG	1 cut(s)	1486
Bsa29I	ATCGAT	1 cut(s)	759
BsaHI	GRCGYC	2 cut(s)	6, 447
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	2 cut(s)	123, 2112
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	62
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	2 cut(s)	375, 1527
BseBI	CCWGG	2 cut(s)	664, 2114
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	123, 2112
BseGI	GGATG	3 cut(s)	412, 1312, 1342
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	2 cut(s)	375, 1527
BseMII	CTCAG	4 cut(s)	353, 783, 906, 2019
BseNI	ACTGG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	3 cut(s)	263, 1313, 2142
BsgI	GTGCAG	1 cut(s)	554
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	16, 392, 662
BshNI	GGYRCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	759
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	1485
BslFI	GGGAC	3 cut(s)	1631, 1710, 1739
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	3 cut(s)	363, 454, 904
BsmBI	CGTCTC	1 cut(s)	454
BsmFI	GGGAC	3 cut(s)	1631, 1710, 1739
BsmI	GAATGC	2 cut(s)	1668, 2132
BsnI	GGCC	3 cut(s)	16, 392, 662
Bso31I	GGTCTC	1 cut(s)	904
BsoBI	CYCGRG	1 cut(s)	143
Bsp120I	GGGCCC	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	394, 861
Bsp143I	GATC	3 cut(s)	1180, 1239, 2075
BspACI	CCGC	7 cut(s)	274, 280, 296, 690, 1303, 1795, 2137
BspANI	GGCC	3 cut(s)	16, 392, 662
BspCNI	CTCAG	4 cut(s)	354, 784, 907, 2020
BspDI	ATCGAT	1 cut(s)	759
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	5 cut(s)	7, 392, 484, 1227, 1727
BspMAI	CTGCAG	3 cut(s)	811, 1219, 2160
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	2070
BspT107I	GGYRCC	1 cut(s)	5
BspTI	CTTAAG	1 cut(s)	1504
BspTNI	GGTCTC	1 cut(s)	904
BsrBI	CCGCTC	1 cut(s)	1797
BsrDI	GCAATG	2 cut(s)	375, 1527
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	123, 2112
BssMI	GATC	3 cut(s)	1180, 1239, 2075
BssNAI	GTATAC	1 cut(s)	714
BssNI	GRCGYC	2 cut(s)	6, 447
BssT1I	CCWWGG	1 cut(s)	123
Bst1107I	GTATAC	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	664, 2114
Bst4CI	ACNGT	5 cut(s)	189, 332, 357, 494, 1777
Bst6I	CTCTTC	2 cut(s)	434, 1412
BstACI	GRCGYC	2 cut(s)	6, 447
BstAFI	CTTAAG	1 cut(s)	1504
BstC8I	GCNNGC	4 cut(s)	294, 537, 1219, 1389
BstF5I	GGATG	3 cut(s)	412, 1312, 1342
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	2 cut(s)	9, 1715
BstHHI	GCGC	2 cut(s)	8, 1714
BstKTI	GATC	3 cut(s)	1183, 1242, 2078
BstMAI	GTCTC	3 cut(s)	363, 454, 904
BstMBI	GATC	3 cut(s)	1180, 1239, 2075
BstMWI	GCNNNNNNNGC	1 cut(s)	1794
BstNI	CCWGG	2 cut(s)	664, 2114
BstNSI	RCATGY	1 cut(s)	2108
BstSCI	CCNGG	3 cut(s)	662, 1484, 2112
BstSFI	CTRYAG	5 cut(s)	807, 1215, 1687, 1789, 2156
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	263, 1313, 2142
BstV2I	GAAGAC	3 cut(s)	14, 614, 1911
BstX2I	RGATCY	1 cut(s)	2075
BstYI	RGATCY	1 cut(s)	2075
BstZ17I	GTATAC	1 cut(s)	714
Bsu15I	ATCGAT	1 cut(s)	759
Bsu36I	CCTNAGG	1 cut(s)	915
BsuRI	GGCC	3 cut(s)	16, 392, 662
BsuTUI	ATCGAT	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	412, 1312, 1342
BtsI	GCAGTG	1 cut(s)	1040
BtsIMutI	CAGTG	2 cut(s)	1040, 1773
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	4 cut(s)	294, 537, 1219, 1389
CaiI	CAGNNNCTG	2 cut(s)	361, 1082
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	2 cut(s)	8, 1714
Cfr13I	GGNCC	3 cut(s)	390, 391, 1726
ClaI	ATCGAT	1 cut(s)	759
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	65, 2171
CspCI	CAANNNNNGTGG	2 cut(s)	1573, 1608
CviQI	GTAC	2 cut(s)	65, 2171
DinI	GGCGCC	1 cut(s)	7
DpnI	GATC	3 cut(s)	1182, 1241, 2077
DpnII	GATC	3 cut(s)	1180, 1239, 2075
Eam1104I	CTCTTC	2 cut(s)	434, 1412
EarI	CTCTTC	2 cut(s)	434, 1412
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	394, 861
Eco31I	GGTCTC	1 cut(s)	904
Eco47I	GGWCC	1 cut(s)	1726
Eco57I	CTGAAG	4 cut(s)	8, 362, 1104, 1123
Eco81I	CCTNAGG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	2183
EcoRII	CCWGG	2 cut(s)	662, 2112
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	2 cut(s)	394, 861
EgeI	GGCGCC	1 cut(s)	7
EheI	GGCGCC	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	454
FaqI	GGGAC	3 cut(s)	1631, 1710, 1739
FauI	CCCGC	2 cut(s)	289, 1296
FauNDI	CATATG	2 cut(s)	1663, 1819
FbaI	TGATCA	1 cut(s)	1180
FblI	GTMKAC	2 cut(s)	713, 2005
Fnu4HI	GCNGC	5 cut(s)	277, 280, 1327, 1795, 2156
FokI	GGATG	3 cut(s)	419, 1319, 1349
FriOI	GRGCYC	2 cut(s)	394, 861
Fsp4HI	GCNGC	5 cut(s)	277, 280, 1327, 1795, 2156
FspBI	CTAG	4 cut(s)	540, 1527, 1635, 2188
GlaI	GCGC	2 cut(s)	7, 1713
GluI	GCNGC	5 cut(s)	277, 280, 1327, 1795, 2156
GsuI	CTGGAG	1 cut(s)	1934
HaeII	RGCGCY	2 cut(s)	9, 1715
HaeIII	GGCC	3 cut(s)	16, 392, 662
HapII	CCGG	1 cut(s)	1485
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	2 cut(s)	8, 1714
Hin1I	GRCGYC	2 cut(s)	6, 447
Hin6I	GCGC	2 cut(s)	6, 1712
HinP1I	GCGC	2 cut(s)	6, 1712
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	2 cut(s)	414, 870
HinfI	GANTC	4 cut(s)	337, 373, 470, 1683
HpaII	CCGG	1 cut(s)	1485
HphI	GGTGA	7 cut(s)	31, 40, 263, 397, 715, 1336, 1814
Hpy166II	GTNNAC	6 cut(s)	271, 313, 328, 632, 714, 2006
Hpy188I	TCNGA	7 cut(s)	303, 336, 342, 363, 406, 784, 1078
Hpy8I	GTNNAC	6 cut(s)	271, 313, 328, 632, 714, 2006
HpyAV	CCTTC	9 cut(s)	55, 390, 548, 634, 790, 848, 1079, 1357, 1733
HpyCH4III	ACNGT	5 cut(s)	189, 332, 357, 494, 1777
HpyCH4IV	ACGT	2 cut(s)	1031, 1717
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1794
HpySE526I	ACGT	2 cut(s)	1031, 1717
Hsp92I	GRCGYC	2 cut(s)	6, 447
HspAI	GCGC	2 cut(s)	6, 1712
KasI	GGCGCC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	1180
Kzo9I	GATC	3 cut(s)	1180, 1239, 2075
LmnI	GCTCC	2 cut(s)	582, 1612
Lsp1109I	GCAGC	3 cut(s)	263, 1313, 2142
LweI	GCATC	3 cut(s)	397, 1374, 1384
MaeI	CTAG	4 cut(s)	540, 1527, 1635, 2188
MaeII	ACGT	2 cut(s)	1031, 1717
MalI	GATC	3 cut(s)	1182, 1241, 2077
MbiI	CCGCTC	1 cut(s)	1797
MboI	GATC	3 cut(s)	1180, 1239, 2075
MflI	RGATCY	1 cut(s)	2075
MhlI	GDGCHC	2 cut(s)	394, 861
MluCI	AATT	8 cut(s)	214, 286, 964, 1089, 1149, 1851, 2119, 2183
Mly113I	GGCGCC	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	460
MroXI	GAANNNNTTC	3 cut(s)	267, 400, 1406
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	2 cut(s)	276, 296
MspCI	CTTAAG	1 cut(s)	1504
MspI	CCGG	1 cut(s)	1485
MspR9I	CCNGG	3 cut(s)	664, 1486, 2114
Mva1269I	GAATGC	2 cut(s)	1668, 2132
MvaI	CCWGG	2 cut(s)	664, 2114
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	1794
NarI	GGCGCC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	1486
NdeI	CATATG	2 cut(s)	1663, 1819
NdeII	GATC	3 cut(s)	1180, 1239, 2075
NlaIV	GGNNCC	5 cut(s)	7, 392, 484, 1227, 1727
NmuCI	GTSAC	6 cut(s)	351, 817, 1552, 1622, 1802, 2107
NspI	RCATGY	1 cut(s)	2108
PaeR7I	CTCGAG	1 cut(s)	143
PagI	TCATGA	1 cut(s)	939
PciI	ACATGT	1 cut(s)	2104
PctI	GAATGC	2 cut(s)	1668, 2132
PdmI	GAANNNNTTC	3 cut(s)	267, 400, 1406
PfeI	GAWTC	3 cut(s)	337, 373, 1683
PflFI	GACNNNGTC	2 cut(s)	1371, 1550
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	5 cut(s)	278, 281, 1328, 1796, 2157
PleI	GAGTC	1 cut(s)	478
PluTI	GGCGCC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	1 cut(s)	2104
Psp6I	CCWGG	2 cut(s)	662, 2112
PspGI	CCWGG	2 cut(s)	662, 2112
PspN4I	GGNNCC	5 cut(s)	7, 392, 484, 1227, 1727
PspOMI	GGGCCC	1 cut(s)	390
PspPI	GGNCC	3 cut(s)	390, 391, 1726
PspXI	VCTCGAGB	1 cut(s)	143
PstI	CTGCAG	3 cut(s)	811, 1219, 2160
PstNI	CAGNNNCTG	2 cut(s)	361, 1082
PsuI	RGATCY	1 cut(s)	2075
PsyI	GACNNNGTC	2 cut(s)	1371, 1550
RsaI	GTAC	2 cut(s)	66, 2172
RsaNI	GTAC	2 cut(s)	65, 2171
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	5 cut(s)	277, 280, 1327, 1795, 2156
Sau3AI	GATC	3 cut(s)	1180, 1239, 2075
Sau96I	GGNCC	3 cut(s)	390, 391, 1726
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	3 cut(s)	664, 1486, 2114
SduI	GDGCHC	2 cut(s)	394, 861
SfaNI	GCATC	3 cut(s)	397, 1374, 1384
SfcI	CTRYAG	5 cut(s)	807, 1215, 1687, 1789, 2156
SfoI	GGCGCC	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	1726
SlaI	CTCGAG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	3 cut(s)	143, 1316, 1504
SmoI	CTYRAG	3 cut(s)	143, 1316, 1504
Sse9I	AATT	8 cut(s)	214, 286, 964, 1089, 1149, 1851, 2119, 2183
SsiI	CCGC	7 cut(s)	274, 280, 296, 690, 1303, 1795, 2137
SspDI	GGCGCC	1 cut(s)	5
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	4 cut(s)	540, 1527, 1635, 2188
StyD4I	CCNGG	3 cut(s)	662, 1484, 2112
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	5 cut(s)	189, 332, 357, 494, 1777
TaiI	ACGT	2 cut(s)	1034, 1720
TaqI	TCGA	6 cut(s)	144, 177, 561, 602, 759, 890
TasI	AATT	8 cut(s)	214, 286, 964, 1089, 1149, 1851, 2119, 2183
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	2 cut(s)	282, 1797
TfiI	GAWTC	3 cut(s)	337, 373, 1683
TscAI	CASTG	2 cut(s)	1047, 1780
TseFI	GTSAC	6 cut(s)	351, 817, 1552, 1622, 1802, 2107
TseI	GCWGC	3 cut(s)	276, 1326, 2155
Tsp45I	GTSAC	6 cut(s)	351, 817, 1552, 1622, 1802, 2107
TspRI	CASTG	2 cut(s)	1047, 1780
Tth111I	GACNNNGTC	2 cut(s)	1371, 1550
Van91I	CCANNNNNTGG	1 cut(s)	124
Vha464I	CTTAAG	1 cut(s)	1504
VpaK11BI	GGWCC	1 cut(s)	1726
XapI	RAATTY	2 cut(s)	1089, 2183
XbaI	TCTAGA	1 cut(s)	1634
XceI	RCATGY	1 cut(s)	2108
XhoI	CTCGAG	1 cut(s)	143
XmiI	GTMKAC	2 cut(s)	713, 2005
XmnI	GAANNNNTTC	3 cut(s)	267, 400, 1406
XspI	CTAG	4 cut(s)	540, 1527, 1635, 2188
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.