Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

29816155 .. 29817708

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGATCCAAGGCTCTACAAATCTGCAAAATCAGGGGATGTTTGCTTCCTCAGAAAACTTCTTAGTGATAATCCTAGCCTTTTATATAAACTTACACCTCGCGAAAACACAACCCTCCATATAGCTGTGCAATTCGGACACAAAAATGTCGCGGCCGAGATTTATAGCAGATCCAGGTCACTTCTCAAACAGCAAAACTTAGATGGAGATACACCTTTGCATGTGGCTGCAAGGTTTGGCCACTTCTCTATTGTCAACTATCTGGTTAGAGATATAATTTCATCACTGTCAGAGGTAGACCTGGGGCTTGAGACTCTGAGAATTAGAAATAGGGGGAACAGCACAGTATTACACGAAGCTTCAAGGAATGGTCACTATAAAGTGGTCGAGTTCTTAATCAAAGTTGATCCTAACTTGGCTTCTGTTGAAAATGATGAGGGTGAGTCTCCACTGTATCTGGCTGCAAGAGGGGGAATGTTAGATATTGTGAATCAAATTATAAGGACAACTCCGTCATCAGCTCATGGTGGTTCAGATGGCCAAACAGCTTTGCATGCTGCTGTGGTTGAGAGGCATATTGGTATCATGGAAGCTCTGCTAGCATTCAAACAAGAACTAGGCAAAGAAGCTGATCGACAAGGCCGGACTCCTCTCTACTATGCAGCATCCCTAGGTGACCACAGAACAGTTCAGCGATTACTAGAACTTGATACTTCTACTGCATATGTCTTGGATAAAGATGGTCGATCACCAATTCATGTTGCAGCTAGGAATGGTCATACCGGTGTGATTAGAGAGATTATCCAACATTGCCCAGATTCGGGAGAACTAATTGACCCTTATGGACAGAATGCTCTTCATATTGCTATTTCCAGTGGACAAGCTAATGTTGTCACATATATATTAGAAACACCAGAACTAGAAGGGTTGATAAATCAGTCTGATATTGATGGAAACACGCCTTTGCATCTAGCAGCGATTGCAAGACAAACTTGGATTCTTTGGTACTTGATGTGGGATGGAAGAGTAAATCAAAGATCCAAGAACAAATATGGCCAAACAGCATTTGACAATGATAGGTCAATGAAGAAATCTAGTATTACATCTCCCATGGTGAGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

374

Amino Acids

41.44

Weight (kDa)

6.74

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	7 - 89	9.5e-11	Ankyrin repeats (3 copies)
Ank	PF00023	68 - 90	7.2e-06	Ankyrin repeat
Ank_2	PF12796	110 - 167	2.2e-08	Ankyrin repeats (3 copies)
Ank_2	PF12796	158 - 236	9.6e-11	Ankyrin repeats (3 copies)
Ank_4	PF13637	220 - 264	3.3e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	229 - 303	1.5e-12	Ankyrin repeats (3 copies)
Ank_5	PF13857	276 - 325	1.5e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AasI	GACNNNNNNGTC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	2 cut(s)	102, 152
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	4 cut(s)	12, 165, 401, 1032
AcoI	YGGCCR	4 cut(s)	153, 238, 538, 1054
AfaI	GTAC	2 cut(s)	1007, 1120
AfiI	CCNNNNNNNGG	2 cut(s)	820, 821
AgeI	ACCGGT	1 cut(s)	782
AgsI	TTSAA	3 cut(s)	363, 428, 607
AjnI	CCWGG	2 cut(s)	173, 300
AluBI	AGCT	8 cut(s)	125, 359, 521, 548, 593, 629, 767, 884
AluI	AGCT	8 cut(s)	125, 359, 521, 548, 593, 629, 767, 884
Alw26I	GTCTC	2 cut(s)	305, 450
AlwI	GGATC	4 cut(s)	12, 165, 401, 1032
AoxI	GGCC	5 cut(s)	153, 238, 538, 640, 1054
ApeKI	GCWGC	6 cut(s)	227, 461, 557, 662, 764, 974
AsiGI	ACCGGT	1 cut(s)	782
AspA2I	CCTAGG	1 cut(s)	670
AsuHPI	GGTGA	3 cut(s)	452, 686, 741
AsuNHI	GCTAGC	1 cut(s)	598
AvrII	CCTAGG	1 cut(s)	670
BalI	TGGCCA	3 cut(s)	240, 540, 1056
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	6 cut(s)	214, 448, 544, 674, 776, 986
BccI	CCATC	5 cut(s)	197, 530, 734, 944, 1013
BciT130I	CCWGG	2 cut(s)	175, 302
BcoDI	GTCTC	2 cut(s)	305, 450
BfaI	CTAG	9 cut(s)	75, 599, 617, 671, 701, 768, 920, 971, 1095
BisI	GCNGC	7 cut(s)	153, 228, 462, 558, 663, 765, 975
BlnI	CCTAGG	1 cut(s)	670
BlsI	GCNGC	7 cut(s)	154, 229, 463, 559, 664, 766, 976
BmcAI	AGTACT	1 cut(s)	1120
Bme1390I	CCNGG	2 cut(s)	175, 302
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	175, 302
BmsI	GCATC	2 cut(s)	674, 976
BmtI	GCTAGC	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	4 cut(s)	8, 301, 670, 1110
BsaWI	WCCGGW	1 cut(s)	782
Bsc4I	CCNNNNNNNGG	2 cut(s)	820, 821
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	1 cut(s)	873
Bse3DI	GCAATG	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	175, 302
BseDI	CCNNGG	4 cut(s)	8, 301, 670, 1110
BseGI	GGATG	3 cut(s)	43, 665, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	820, 821
BseMI	GCAATG	1 cut(s)	808
BseMII	CTCAG	2 cut(s)	64, 308
BseNI	ACTGG	1 cut(s)	873
BseRI	GAGGAG	1 cut(s)	639
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	6 cut(s)	214, 448, 544, 674, 776, 986
Bsh1236I	CGCG	2 cut(s)	102, 152
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	5 cut(s)	155, 240, 540, 642, 1056
BshTI	ACCGGT	1 cut(s)	782
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	643, 783
BslI	CCNNNNNNNGG	2 cut(s)	820, 821
BsmAI	GTCTC	2 cut(s)	305, 450
BsmI	GAATGC	2 cut(s)	602, 856
BsnI	GGCC	5 cut(s)	155, 240, 540, 642, 1056
Bsp143I	GATC	6 cut(s)	4, 170, 406, 631, 746, 1037
Bsp19I	CCATGG	1 cut(s)	1110
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	5 cut(s)	155, 240, 540, 642, 1056
BspCNI	CTCAG	2 cut(s)	63, 309
BspFNI	CGCG	2 cut(s)	102, 152
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	602
BspPI	GGATC	4 cut(s)	12, 165, 401, 1032
BspQI	GCTCTTC	1 cut(s)	861
BsrDI	GCAATG	1 cut(s)	808
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	873
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	4 cut(s)	8, 301, 670, 1110
BssMI	GATC	6 cut(s)	4, 170, 406, 631, 746, 1037
BssT1I	CCWWGG	3 cut(s)	8, 670, 1110
Bst2UI	CCWGG	2 cut(s)	175, 302
Bst4CI	ACNGT	4 cut(s)	288, 346, 453, 688
Bst6I	CTCTTC	2 cut(s)	861, 1018
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstC8I	GCNNGC	2 cut(s)	555, 600
BstDEI	CTNAG	4 cut(s)	50, 62, 199, 317
BstDSI	CCRYGG	1 cut(s)	1110
BstEII	GGTNACC	1 cut(s)	674
BstF5I	GGATG	3 cut(s)	43, 665, 1024
BstFNI	CGCG	2 cut(s)	102, 152
BstKTI	GATC	6 cut(s)	7, 173, 409, 634, 749, 1040
BstMAI	GTCTC	2 cut(s)	305, 450
BstMBI	GATC	6 cut(s)	4, 170, 406, 631, 746, 1037
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 599, 980
BstNI	CCWGG	2 cut(s)	175, 302
BstNSI	RCATGY	2 cut(s)	224, 557
BstPI	GGTNACC	1 cut(s)	674
BstSCI	CCNGG	2 cut(s)	173, 300
BstUI	CGCG	2 cut(s)	102, 152
BstV1I	GCAGC	6 cut(s)	214, 448, 544, 674, 776, 986
BstX2I	RGATCY	3 cut(s)	4, 170, 1037
BstYI	RGATCY	3 cut(s)	4, 170, 1037
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	5 cut(s)	155, 240, 540, 642, 1056
BtgI	CCRYGG	1 cut(s)	1110
BtsCI	GGATG	3 cut(s)	43, 665, 1024
BtsIMutI	CAGTG	3 cut(s)	284, 449, 880
BtuMI	TCGCGA	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	555, 600
Cfr10I	RCCGGY	1 cut(s)	782
Csp6I	GTAC	2 cut(s)	1006, 1119
CspAI	ACCGGT	1 cut(s)	782
CviAII	CATG	6 cut(s)	221, 524, 554, 586, 758, 1111
CviQI	GTAC	2 cut(s)	1006, 1119
DdeI	CTNAG	4 cut(s)	50, 62, 199, 317
DpnI	GATC	6 cut(s)	6, 172, 408, 633, 748, 1039
DpnII	GATC	6 cut(s)	4, 170, 406, 631, 746, 1037
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	4 cut(s)	153, 238, 538, 1054
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	861, 1018
EarI	CTCTTC	2 cut(s)	861, 1018
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	3 cut(s)	8, 670, 1110
Eco52I	CGGCCG	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	674
EcoO65I	GGTNACC	1 cut(s)	674
EcoRII	CCWGG	2 cut(s)	173, 300
EcoT14I	CCWWGG	3 cut(s)	8, 670, 1110
ErhI	CCWWGG	3 cut(s)	8, 670, 1110
FaeI	CATG	6 cut(s)	224, 527, 557, 589, 761, 1114
FalI	AAGNNNNNCTT	2 cut(s)	976, 1008
FatI	CATG	6 cut(s)	220, 523, 553, 585, 757, 1110
FauNDI	CATATG	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	7 cut(s)	153, 228, 462, 558, 663, 765, 975
FokI	GGATG	3 cut(s)	50, 652, 1031
Fsp4HI	GCNGC	7 cut(s)	153, 228, 462, 558, 663, 765, 975
FspBI	CTAG	9 cut(s)	75, 599, 617, 671, 701, 768, 920, 971, 1095
GluI	GCNGC	7 cut(s)	153, 228, 462, 558, 663, 765, 975
HaeIII	GGCC	5 cut(s)	155, 240, 540, 642, 1056
HapII	CCGG	2 cut(s)	643, 783
Hin1II	CATG	6 cut(s)	224, 527, 557, 589, 761, 1114
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	6 cut(s)	313, 443, 490, 646, 818, 997
HpaII	CCGG	2 cut(s)	643, 783
HphI	GGTGA	3 cut(s)	452, 686, 741
Hpy166II	GTNNAC	3 cut(s)	256, 298, 878
Hpy188I	TCNGA	6 cut(s)	53, 137, 292, 318, 535, 943
Hpy188III	TCNNGA	2 cut(s)	101, 822
Hpy8I	GTNNAC	3 cut(s)	256, 298, 878
HpyAV	CCTTC	1 cut(s)	917
HpyCH4III	ACNGT	4 cut(s)	288, 346, 453, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 599, 980
HpyF3I	CTNAG	4 cut(s)	50, 62, 199, 317
Hsp92II	CATG	6 cut(s)	224, 527, 557, 589, 761, 1114
Kzo9I	GATC	6 cut(s)	4, 170, 406, 631, 746, 1037
LguI	GCTCTTC	1 cut(s)	861
Lsp1109I	GCAGC	6 cut(s)	214, 448, 544, 674, 776, 986
LweI	GCATC	2 cut(s)	674, 976
MaeI	CTAG	9 cut(s)	75, 599, 617, 671, 701, 768, 920, 971, 1095
MaeIII	GTNAC	4 cut(s)	177, 371, 674, 892
MalI	GATC	6 cut(s)	6, 172, 408, 633, 748, 1039
MboI	GATC	6 cut(s)	4, 170, 406, 631, 746, 1037
MboII	GAAGA	3 cut(s)	848, 1035, 1099
MflI	RGATCY	3 cut(s)	4, 170, 1037
MlsI	TGGCCA	3 cut(s)	240, 540, 1056
MluCI	AATT	6 cut(s)	131, 276, 321, 495, 753, 831
MluNI	TGGCCA	3 cut(s)	240, 540, 1056
MlyI	GAGTC	3 cut(s)	307, 452, 640
MmeI	TCCRAC	1 cut(s)	829
MnlI	CCTC	8 cut(s)	59, 108, 125, 286, 430, 461, 564, 660
Mox20I	TGGCCA	3 cut(s)	240, 540, 1056
MscI	TGGCCA	3 cut(s)	240, 540, 1056
MseI	TTAA	2 cut(s)	395, 1123
MslI	CAYNNNNRTG	2 cut(s)	144, 783
Msp20I	TGGCCA	3 cut(s)	240, 540, 1056
MspI	CCGG	2 cut(s)	643, 783
MspR9I	CCNGG	2 cut(s)	175, 302
Mva1269I	GAATGC	2 cut(s)	602, 856
MvaI	CCWGG	2 cut(s)	175, 302
MvnI	CGCG	2 cut(s)	102, 152
MwoI	GCNNNNNNNGC	3 cut(s)	554, 599, 980
NcoI	CCATGG	1 cut(s)	1110
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	6 cut(s)	4, 170, 406, 631, 746, 1037
NheI	GCTAGC	1 cut(s)	598
NlaIII	CATG	6 cut(s)	224, 527, 557, 589, 761, 1114
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	4 cut(s)	177, 371, 674, 892
NruI	TCGCGA	1 cut(s)	102
NspI	RCATGY	2 cut(s)	224, 557
PaeI	GCATGC	1 cut(s)	557
PciSI	GCTCTTC	1 cut(s)	861
PctI	GAATGC	2 cut(s)	602, 856
PfeI	GAWTC	3 cut(s)	490, 818, 997
PinAI	ACCGGT	1 cut(s)	782
PkrI	GCNGC	7 cut(s)	154, 229, 463, 559, 664, 766, 976
PleI	GAGTC	3 cut(s)	307, 451, 640
PpsI	GAGTC	3 cut(s)	307, 451, 640
PsiI	TTATAA	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	173, 300
PspEI	GGTNACC	1 cut(s)	674
PspGI	CCWGG	2 cut(s)	173, 300
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	3 cut(s)	4, 170, 1037
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	2 cut(s)	1007, 1120
RsaNI	GTAC	2 cut(s)	1006, 1119
RseI	CAYNNNNRTG	2 cut(s)	144, 783
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	2 cut(s)	395, 1123
SatI	GCNGC	7 cut(s)	153, 228, 462, 558, 663, 765, 975
Sau3AI	GATC	6 cut(s)	4, 170, 406, 631, 746, 1037
ScaI	AGTACT	1 cut(s)	1120
SchI	GAGTC	3 cut(s)	307, 452, 640
ScrFI	CCNGG	2 cut(s)	175, 302
SfaNI	GCATC	2 cut(s)	674, 976
SmiMI	CAYNNNNRTG	2 cut(s)	144, 783
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	6 cut(s)	131, 276, 321, 495, 753, 831
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	9 cut(s)	75, 599, 617, 671, 701, 768, 920, 971, 1095
StyD4I	CCNGG	2 cut(s)	173, 300
StyI	CCWWGG	3 cut(s)	8, 670, 1110
TaaI	ACNGT	4 cut(s)	288, 346, 453, 688
TaqI	TCGA	3 cut(s)	387, 634, 745
TasI	AATT	6 cut(s)	131, 276, 321, 495, 753, 831
TatI	WGTACW	1 cut(s)	1118
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	490, 818, 997
Tru1I	TTAA	2 cut(s)	395, 1123
Tru9I	TTAA	2 cut(s)	395, 1123
TscAI	CASTG	3 cut(s)	291, 456, 880
TseFI	GTSAC	4 cut(s)	177, 371, 674, 892
TseI	GCWGC	6 cut(s)	227, 461, 557, 662, 764, 974
Tsp45I	GTSAC	4 cut(s)	177, 371, 674, 892
TspDTI	ATGAA	4 cut(s)	270, 746, 848, 1100
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	3 cut(s)	291, 456, 880
XceI	RCATGY	2 cut(s)	224, 557
XmaJI	CCTAGG	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	9 cut(s)	75, 599, 617, 671, 701, 768, 920, 971, 1095
ZrmI	AGTACT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.