Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

28116240 .. 28117034

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1234700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATTCACATGTTGGTGCGTGGTCGAACAGCGTCGGATGCACAAGCTCTGATTCTTAGAATGGTTAGAAAGAGTGGCATTTCGTGTGTTGAAGTAGCAGACTCTTTGGTTTCAACTTATAGCAGTTGCGGCTCAAGTTCTTTGGTCTTTGATATGTTTGTTAGAACTTATGTGCAGGCTAAGAAGTTGAGAGAAGGATTTGAGGCGTTTCAGCTGTTTAGAAGCAAGGGAGTTTGTGTTTTGATAAATGCTTGCAATAGTCCTCTTGGCGGGCTTGTGAAGGTCGGGTGGATTGATTTGGCATGGGTCGTATATGGGGAAGTTGTTAGCAGTGGGATTCAGTTAAATGTTTATACACCGAATATAATGGTCAATGCCTTATGCAAAGCTCGCAAAATTGATAGCGTTAAATTCTTCTTATCAGATAGGGAAGAGAAGGGGTTGTTTTCAGATATTGTGACATATAATACACTAATCAATGCATATTGTCGTGAAGGGCTTCCTGAAGAAGCTTTTCAGTTAAAAAACTCTATGTCTTCTAAGGGGTTGAAACCTGAGCTTTTCACGTACAATGCTATCATAAATGGCTTATGTAAAGTAGGAAATTATGTGAGAGCAAAGGAACTTTTGTATGAAATGTTGCAAGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

218

Amino Acids

24.06

Weight (kDa)

8.93

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	84 - 129	1e-07	PPR repeat family
PPR_3	PF13812	141 - 195	1.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	146 - 178	9.6e-13	PPR repeat
PPR_2	PF13041	151 - 199	6.2e-20	PPR repeat family
PPR	PF01535	153 - 183	7e-10	PPR repeat
PPR_1	PF12854	181 - 213	2.5e-10	PPR repeat
PPR_2	PF13041	186 - 217	8.4e-06	PPR repeat family
PPR	PF01535	188 - 216	3.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	129, 270
AcsI	RAATTY	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	92, 114, 550
AluBI	AGCT	5 cut(s)	47, 214, 389, 512, 559
AluI	AGCT	5 cut(s)	47, 214, 389, 512, 559
ApoI	RAATTY	1 cut(s)	410
Asp700I	GAANNNNTTC	2 cut(s)	498, 513
BbsI	GAAGAC	1 cut(s)	528
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	528
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	546
BsgI	GTGCAG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	269
BspACI	CCGC	2 cut(s)	129, 270
BspCNI	CTCAG	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	4 cut(s)	177, 253, 272, 391
BstDEI	CTNAG	4 cut(s)	56, 180, 540, 555
BstF5I	GGATG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 129, 390
BstNSI	RCATGY	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	4 cut(s)	177, 253, 272, 391
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	2 cut(s)	10, 303
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	4 cut(s)	56, 180, 540, 555
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	484
FaeI	CATG	2 cut(s)	13, 306
FatI	CATG	2 cut(s)	9, 302
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	130
HgaI	GACGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	13, 306
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	4 cut(s)	4, 52, 101, 337
Hpy188I	TCNGA	4 cut(s)	37, 51, 424, 451
Hpy188III	TCNNGA	2 cut(s)	491, 503
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	188, 274, 430, 488
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	41, 175, 255, 384, 482, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 129, 390
HpyF3I	CTNAG	4 cut(s)	56, 180, 540, 555
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	2 cut(s)	13, 306
LpnPI	CCDG	3 cut(s)	161, 516, 567
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	406, 443, 518, 528
MluCI	AATT	3 cut(s)	396, 410, 604
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	2 cut(s)	196, 273
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	2 cut(s)	498, 513
MseI	TTAA	3 cut(s)	344, 408, 521
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	38, 129, 390
NlaIII	CATG	2 cut(s)	13, 306
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	1 cut(s)	13
PciI	ACATGT	1 cut(s)	9
PdmI	GAANNNNTTC	2 cut(s)	498, 513
PfeI	GAWTC	3 cut(s)	4, 52, 337
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	567
PscI	ACATGT	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	344, 408, 521
SatI	GCNGC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	95
SetI	ASST	9 cut(s)	49, 216, 285, 391, 514, 556, 561, 569, 649
SfaNI	GCATC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	3 cut(s)	396, 410, 604
SsiI	CCGC	2 cut(s)	129, 270
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	396, 410, 604
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	4, 52, 337
Tru1I	TTAA	3 cut(s)	344, 408, 521
Tru9I	TTAA	3 cut(s)	344, 408, 521
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	648
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	410
XceI	RCATGY	1 cut(s)	13
XmnI	GAANNNNTTC	2 cut(s)	498, 513
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.