Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

28132959 .. 28134432

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1235100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAATCACAAGAACCCTGTAGTAGTACAAGCCAAGAACTGTTTTCATCAGCTTCTTTATCAGATTCTCTTTTGGTGGAAAAGATTTTATTAGGTCTGAAGCAAGGTAACCTCACCTCTTTGCGCAGCTTTCTGTTTCGGTTAAACCCGTCTCTTATTGTTGTTGTTCTTTCTTGCTGCCGTGAAAATTTGCAACTGGGTCTGAAGTTTATTGATTTGATTCTGTTAAATAGTCCTGATTTTAAGCATTCATCACTGTCTTTGAGTGCAATGATTCACATGTTGGTGCGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

99

Amino Acids

10.84

Weight (kDa)

7.76

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	119, 224
AfaI	GTAC	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	279
AluBI	AGCT	2 cut(s)	53, 129
AluI	AGCT	2 cut(s)	53, 129
Alw26I	GTCTC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	126, 177
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	138, 164
BceAI	ACGGC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	19
BisI	GCNGC	2 cut(s)	127, 178
BlsI	GCNGC	2 cut(s)	128, 179
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	138, 164
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	42, 258
BstEII	GGTNACC	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	126
BstMAI	GTCTC	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	283
BstPI	GGTNACC	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	138, 164
BtsIMutI	CAGTG	1 cut(s)	254
CfoI	GCGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	3 cut(s)	33, 53, 129
CviKI_1	RGCY	3 cut(s)	33, 53, 129
CviQI	GTAC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	119, 224
Eco91I	GGTNACC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	1 cut(s)	283
FaiI	YATR	1 cut(s)	281
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	127, 178
Fsp4HI	GCNGC	2 cut(s)	127, 178
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	127, 178
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	65, 220, 274
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	64, 99, 204
Hpy188III	TCNNGA	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	42, 258
HpyCH4V	TGCA	3 cut(s)	4, 193, 269
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	31, 182, 249
Lsp1109I	GCAGC	2 cut(s)	138, 164
MaeIII	GTNAC	1 cut(s)	107
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	2 cut(s)	122, 127
MseI	TTAA	3 cut(s)	143, 227, 243
MslI	CAYNNNNRTG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	283
NsbI	TGCGCA	1 cut(s)	125
NspI	RCATGY	1 cut(s)	283
PciI	ACATGT	1 cut(s)	279
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	65, 220, 274
PkrI	GCNGC	2 cut(s)	128, 179
PscI	ACATGT	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	143, 227, 243
SatI	GCNGC	2 cut(s)	127, 178
SetI	ASST	6 cut(s)	55, 97, 109, 114, 119, 131
SfcI	CTRYAG	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	42, 258
TasI	AATT	1 cut(s)	187
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	3 cut(s)	65, 220, 274
Tru1I	TTAA	3 cut(s)	143, 227, 243
Tru9I	TTAA	3 cut(s)	143, 227, 243
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	126, 177
TspDTI	ATGAA	2 cut(s)	36, 240
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.