Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G01110 AT5G01110 |
| fragaria_vesca | FvH4_3g27950 FvH4_3g27950 |
| malus_domestica | MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1 |
| prunus_persica | Prupe.2G102900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0050671 |
| rosa_laevigata | RLG00000034717 RLG00000034720 |
| rosa_multiflora | Rmu_ssc0000350.1_g000039 |
| rosa_roxburghii | Rroxscaffold_1G00030130 |
| rosa_rugosa | Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000 |
| rosa_samantha | Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300 |
| rosa_wichuraiana | Rw5G031590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 128 |
| Acc36I | ACCTGC | 1 cut(s) | 571 |
| AccBSI | CCGCTC | 1 cut(s) | 1710 |
| AccI | GTMKAC | 1 cut(s) | 1918 |
| AccII | CGCG | 2 cut(s) | 186, 358 |
| AciI | CCGC | 5 cut(s) | 184, 292, 1216, 1708, 1954 |
| AcsI | RAATTY | 6 cut(s) | 190, 209, 241, 897, 1002, 2096 |
| AcuI | CTGAAG | 2 cut(s) | 122, 1036 |
| AfaI | GTAC | 2 cut(s) | 25, 842 |
| AflIII | ACRYGT | 2 cut(s) | 1612, 2017 |
| AgsI | TTSAA | 9 cut(s) | 365, 387, 916, 1009, 1210, 1264, 1324, 1652, 1758 |
| AjnI | CCWGG | 1 cut(s) | 2025 |
| Alw21I | GWGCWC | 1 cut(s) | 1320 |
| Alw26I | GTCTC | 2 cut(s) | 817, 1983 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 995 |
| ApeKI | GCWGC | 2 cut(s) | 180, 2068 |
| ApoI | RAATTY | 6 cut(s) | 190, 209, 241, 897, 1002, 2096 |
| AseI | ATTAAT | 2 cut(s) | 1481, 1800 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 786 |
| AspLEI | GCGC | 1 cut(s) | 129 |
| AspS9I | GGNCC | 1 cut(s) | 1639 |
| AsuHPI | GGTGA | 1 cut(s) | 1517 |
| AvaII | GGWCC | 1 cut(s) | 1639 |
| AxyI | CCTNAGG | 1 cut(s) | 828 |
| BanII | GRGCYC | 1 cut(s) | 1320 |
| BbsI | GAAGAC | 1 cut(s) | 527 |
| Bbv12I | GWGCWC | 1 cut(s) | 1320 |
| BbvCI | CCTCAGC | 1 cut(s) | 996 |
| BbvI | GCAGC | 2 cut(s) | 167, 2055 |
| BccI | CCATC | 3 cut(s) | 1324, 1481, 1849 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 34 |
| BciT130I | CCWGG | 1 cut(s) | 2027 |
| BclI | TGATCA | 1 cut(s) | 1093 |
| BcoDI | GTCTC | 2 cut(s) | 817, 1983 |
| BfaI | CTAG | 5 cut(s) | 453, 1548, 1673, 1946, 2101 |
| BfmI | CTRYAG | 4 cut(s) | 19, 970, 1600, 1915 |
| BfuAI | ACCTGC | 1 cut(s) | 571 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1713 |
| BglII | AGATCT | 1 cut(s) | 1879 |
| BisI | GCNGC | 4 cut(s) | 181, 184, 1708, 2069 |
| BlpI | GCTNAGC | 1 cut(s) | 1941 |
| BlsI | GCNGC | 4 cut(s) | 182, 185, 1709, 2070 |
| BmcAI | AGTACT | 1 cut(s) | 25 |
| Bme1390I | CCNGG | 1 cut(s) | 2027 |
| Bme18I | GGWCC | 1 cut(s) | 1639 |
| BmgT120I | GGNCC | 1 cut(s) | 1639 |
| BmiI | GGNNCC | 3 cut(s) | 1140, 1640, 2054 |
| BmrFI | CCNGG | 1 cut(s) | 2027 |
| BmrI | ACTGGG | 2 cut(s) | 104, 209 |
| BmsI | GCATC | 3 cut(s) | 301, 1287, 1297 |
| BmuI | ACTGGG | 2 cut(s) | 104, 209 |
| BpiI | GAAGAC | 1 cut(s) | 527 |
| Bpu10I | CCTNAGC | 2 cut(s) | 996, 1521 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1941 |
| BpuEI | CTTGAG | 2 cut(s) | 391, 1250 |
| Bsa29I | ATCGAT | 1 cut(s) | 1485 |
| BsaAI | YACGTR | 2 cut(s) | 840, 945 |
| BsaI | GGTCTC | 1 cut(s) | 817 |
| BsaJI | CCNNGG | 2 cut(s) | 1864, 2025 |
| Bse1I | ACTGG | 2 cut(s) | 99, 204 |
| Bse21I | CCTNAGG | 1 cut(s) | 828 |
| Bse3DI | GCAATG | 4 cut(s) | 152, 279, 953, 1440 |
| BseBI | CCWGG | 1 cut(s) | 2027 |
| BseCI | ATCGAT | 1 cut(s) | 1485 |
| BseDI | CCNNGG | 2 cut(s) | 1864, 2025 |
| BseGI | GGATG | 4 cut(s) | 316, 598, 1225, 1255 |
| BseMI | GCAATG | 4 cut(s) | 152, 279, 953, 1440 |
| BseMII | CTCAG | 4 cut(s) | 812, 819, 987, 1932 |
| BseNI | ACTGG | 2 cut(s) | 99, 204 |
| BseXI | GCAGC | 2 cut(s) | 167, 2055 |
| BseYI | CCCAGC | 1 cut(s) | 1134 |
| BsgI | GTGCAG | 1 cut(s) | 467 |
| Bsh1236I | CGCG | 2 cut(s) | 186, 358 |
| BshVI | ATCGAT | 1 cut(s) | 1485 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1320 |
| BslFI | GGGAC | 2 cut(s) | 1623, 1652 |
| BsmAI | GTCTC | 2 cut(s) | 817, 1983 |
| BsmFI | GGGAC | 2 cut(s) | 1623, 1652 |
| BsmI | GAATGC | 3 cut(s) | 250, 1581, 1935 |
| Bso31I | GGTCTC | 1 cut(s) | 817 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1320 |
| Bsp143I | GATC | 4 cut(s) | 661, 1093, 1152, 1879 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1941 |
| BspACI | CCGC | 5 cut(s) | 184, 292, 1216, 1708, 1954 |
| BspCNI | CTCAG | 4 cut(s) | 813, 820, 988, 1933 |
| BspDI | ATCGAT | 1 cut(s) | 1485 |
| BspFNI | CGCG | 2 cut(s) | 186, 358 |
| BspLI | GGNNCC | 3 cut(s) | 1140, 1640, 2054 |
| BspMAI | CTGCAG | 1 cut(s) | 23 |
| BspMI | ACCTGC | 1 cut(s) | 571 |
| BspQI | GCTCTTC | 1 cut(s) | 1325 |
| BspTNI | GGTCTC | 1 cut(s) | 817 |
| BsrBI | CCGCTC | 1 cut(s) | 1710 |
| BsrDI | GCAATG | 4 cut(s) | 152, 279, 953, 1440 |
| BsrI | ACTGG | 2 cut(s) | 99, 204 |
| BssECI | CCNNGG | 2 cut(s) | 1864, 2025 |
| BssMI | GATC | 4 cut(s) | 661, 1093, 1152, 1879 |
| BssT1I | CCWWGG | 1 cut(s) | 1864 |
| Bst2UI | CCWGG | 1 cut(s) | 2027 |
| Bst4CI | ACNGT | 2 cut(s) | 45, 1690 |
| Bst6I | CTCTTC | 4 cut(s) | 338, 699, 1325, 1812 |
| BstBAI | YACGTR | 2 cut(s) | 840, 945 |
| BstC8I | GCNNGC | 2 cut(s) | 450, 1132 |
| BstDEI | CTNAG | 8 cut(s) | 329, 821, 828, 996, 1392, 1521, 1741, 1941 |
| BstF5I | GGATG | 4 cut(s) | 316, 598, 1225, 1255 |
| BstFNI | CGCG | 2 cut(s) | 186, 358 |
| BstHHI | GCGC | 1 cut(s) | 129 |
| BstKTI | GATC | 4 cut(s) | 664, 1096, 1155, 1882 |
| BstMAI | GTCTC | 2 cut(s) | 817, 1983 |
| BstMBI | GATC | 4 cut(s) | 661, 1093, 1152, 1879 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 256, 402, 1707, 1713, 1951 |
| BstNI | CCWGG | 1 cut(s) | 2027 |
| BstNSI | RCATGY | 2 cut(s) | 1616, 2021 |
| BstSCI | CCNGG | 1 cut(s) | 2025 |
| BstSFI | CTRYAG | 4 cut(s) | 19, 970, 1600, 1915 |
| BstSNI | TACGTA | 1 cut(s) | 945 |
| BstUI | CGCG | 2 cut(s) | 186, 358 |
| BstV1I | GCAGC | 2 cut(s) | 167, 2055 |
| BstV2I | GAAGAC | 1 cut(s) | 527 |
| BstX2I | RGATCY | 1 cut(s) | 1879 |
| BstYI | RGATCY | 1 cut(s) | 1879 |
| Bsu15I | ATCGAT | 1 cut(s) | 1485 |
| Bsu36I | CCTNAGG | 1 cut(s) | 828 |
| BsuTUI | ATCGAT | 1 cut(s) | 1485 |
| BtsCI | GGATG | 4 cut(s) | 316, 598, 1225, 1255 |
| BtsI | GCAGTG | 1 cut(s) | 610 |
| BtsIMutI | CAGTG | 2 cut(s) | 610, 1686 |
| BveI | ACCTGC | 1 cut(s) | 571 |
| Cac8I | GCNNGC | 2 cut(s) | 450, 1132 |
| CaiI | CAGNNNCTG | 1 cut(s) | 995 |
| CfoI | GCGC | 1 cut(s) | 129 |
| Cfr13I | GGNCC | 1 cut(s) | 1639 |
| ClaI | ATCGAT | 1 cut(s) | 1485 |
| Csp6I | GTAC | 2 cut(s) | 24, 841 |
| CviQI | GTAC | 2 cut(s) | 24, 841 |
| DdeI | CTNAG | 8 cut(s) | 329, 821, 828, 996, 1392, 1521, 1741, 1941 |
| DpnI | GATC | 4 cut(s) | 663, 1095, 1154, 1881 |
| DpnII | GATC | 4 cut(s) | 661, 1093, 1152, 1879 |
| DraI | TTTAAA | 1 cut(s) | 1275 |
| Eam1104I | CTCTTC | 4 cut(s) | 338, 699, 1325, 1812 |
| EarI | CTCTTC | 4 cut(s) | 338, 699, 1325, 1812 |
| Ecl136II | GAGCTC | 1 cut(s) | 1318 |
| Eco105I | TACGTA | 1 cut(s) | 945 |
| Eco130I | CCWWGG | 1 cut(s) | 1864 |
| Eco24I | GRGCYC | 1 cut(s) | 1320 |
| Eco31I | GGTCTC | 1 cut(s) | 817 |
| Eco47I | GGWCC | 1 cut(s) | 1639 |
| Eco53kI | GAGCTC | 1 cut(s) | 1318 |
| Eco57I | CTGAAG | 2 cut(s) | 122, 1036 |
| Eco81I | CCTNAGG | 1 cut(s) | 828 |
| EcoICRI | GAGCTC | 1 cut(s) | 1318 |
| EcoRI | GAATTC | 1 cut(s) | 2096 |
| EcoRII | CCWGG | 1 cut(s) | 2025 |
| EcoT14I | CCWWGG | 1 cut(s) | 1864 |
| EcoT22I | ATGCAT | 1 cut(s) | 757 |
| EcoT38I | GRGCYC | 1 cut(s) | 1320 |
| ErhI | CCWWGG | 1 cut(s) | 1864 |
| FaqI | GGGAC | 2 cut(s) | 1623, 1652 |
| FauI | CCCGC | 2 cut(s) | 285, 1209 |
| FauNDI | CATATG | 1 cut(s) | 1576 |
| FbaI | TGATCA | 1 cut(s) | 1093 |
| FblI | GTMKAC | 1 cut(s) | 1918 |
| Fnu4HI | GCNGC | 4 cut(s) | 181, 184, 1708, 2069 |
| FokI | GGATG | 4 cut(s) | 323, 605, 1232, 1262 |
| FriOI | GRGCYC | 1 cut(s) | 1320 |
| Fsp4HI | GCNGC | 4 cut(s) | 181, 184, 1708, 2069 |
| FspBI | CTAG | 5 cut(s) | 453, 1548, 1673, 1946, 2101 |
| FspI | TGCGCA | 1 cut(s) | 128 |
| GlaI | GCGC | 1 cut(s) | 128 |
| GluI | GCNGC | 4 cut(s) | 181, 184, 1708, 2069 |
| GsaI | CCCAGC | 1 cut(s) | 1138 |
| HhaI | GCGC | 1 cut(s) | 129 |
| Hin6I | GCGC | 1 cut(s) | 127 |
| HinP1I | GCGC | 1 cut(s) | 127 |
| HincII | GTYRAC | 1 cut(s) | 373 |
| HindII | GTYRAC | 1 cut(s) | 373 |
| HindIII | AAGCTT | 3 cut(s) | 318, 783, 1203 |
| HinfI | GANTC | 9 cut(s) | 68, 277, 325, 374, 610, 928, 1596, 1669, 1822 |
| HphI | GGTGA | 1 cut(s) | 1517 |
| Hpy166II | GTNNAC | 5 cut(s) | 373, 1058, 1368, 1887, 1919 |
| Hpy8I | GTNNAC | 5 cut(s) | 373, 1058, 1368, 1887, 1919 |
| Hpy99I | CGWCG | 1 cut(s) | 259 |
| HpyAV | CCTTC | 7 cut(s) | 294, 461, 547, 761, 886, 1545, 1649 |
| HpyCH4III | ACNGT | 2 cut(s) | 45, 1690 |
| HpyCH4IV | ACGT | 5 cut(s) | 839, 944, 1259, 1364, 2000 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 256, 402, 1707, 1713, 1951 |
| HpyF3I | CTNAG | 8 cut(s) | 329, 821, 828, 996, 1392, 1521, 1741, 1941 |
| HpySE526I | ACGT | 5 cut(s) | 839, 944, 1259, 1364, 2000 |
| HspAI | GCGC | 1 cut(s) | 127 |
| Ksp22I | TGATCA | 1 cut(s) | 1093 |
| Kzo9I | GATC | 4 cut(s) | 661, 1093, 1152, 1879 |
| LguI | GCTCTTC | 1 cut(s) | 1325 |
| Lsp1109I | GCAGC | 2 cut(s) | 167, 2055 |
| LweI | GCATC | 3 cut(s) | 301, 1287, 1297 |
| MaeI | CTAG | 5 cut(s) | 453, 1548, 1673, 1946, 2101 |
| MaeII | ACGT | 5 cut(s) | 839, 944, 1259, 1364, 2000 |
| MaeIII | GTNAC | 6 cut(s) | 730, 1255, 1465, 1675, 1682, 2020 |
| MalI | GATC | 4 cut(s) | 663, 1095, 1154, 1881 |
| MbiI | CCGCTC | 1 cut(s) | 1710 |
| MboI | GATC | 4 cut(s) | 661, 1093, 1152, 1879 |
| MfeI | CAATTG | 1 cut(s) | 397 |
| MflI | RGATCY | 1 cut(s) | 1879 |
| MhlI | GDGCHC | 1 cut(s) | 1320 |
| MlyI | GAGTC | 3 cut(s) | 368, 937, 1663 |
| MmeI | TCCRAC | 1 cut(s) | 288 |
| Mph1103I | ATGCAT | 1 cut(s) | 757 |
| MroXI | GAANNNNTTC | 1 cut(s) | 786 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1617 |
| MspA1I | CMGCKG | 1 cut(s) | 487 |
| MspR9I | CCNGG | 1 cut(s) | 2027 |
| MunI | CAATTG | 1 cut(s) | 397 |
| Mva1269I | GAATGC | 3 cut(s) | 250, 1581, 1935 |
| MvaI | CCWGG | 1 cut(s) | 2027 |
| MvnI | CGCG | 2 cut(s) | 186, 358 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 256, 402, 1707, 1713, 1951 |
| NdeI | CATATG | 1 cut(s) | 1576 |
| NdeII | GATC | 4 cut(s) | 661, 1093, 1152, 1879 |
| NlaIV | GGNNCC | 3 cut(s) | 1140, 1640, 2054 |
| NmuCI | GTSAC | 4 cut(s) | 730, 1255, 1465, 2020 |
| NsbI | TGCGCA | 1 cut(s) | 128 |
| NsiI | ATGCAT | 1 cut(s) | 757 |
| NspI | RCATGY | 2 cut(s) | 1616, 2021 |
| PciI | ACATGT | 2 cut(s) | 1612, 2017 |
| PciSI | GCTCTTC | 1 cut(s) | 1325 |
| PctI | GAATGC | 3 cut(s) | 250, 1581, 1935 |
| PdmI | GAANNNNTTC | 1 cut(s) | 786 |
| PfeI | GAWTC | 6 cut(s) | 68, 277, 325, 610, 1596, 1822 |
| PflFI | GACNNNGTC | 1 cut(s) | 1463 |
| PkrI | GCNGC | 4 cut(s) | 182, 185, 1709, 2070 |
| PleI | GAGTC | 3 cut(s) | 368, 936, 1663 |
| PpsI | GAGTC | 3 cut(s) | 368, 936, 1663 |
| Ppu21I | YACGTR | 2 cut(s) | 840, 945 |
| PscI | ACATGT | 2 cut(s) | 1612, 2017 |
| PshBI | ATTAAT | 2 cut(s) | 1481, 1800 |
| Psp124BI | GAGCTC | 1 cut(s) | 1320 |
| Psp6I | CCWGG | 1 cut(s) | 2025 |
| PspFI | CCCAGC | 1 cut(s) | 1134 |
| PspGI | CCWGG | 1 cut(s) | 2025 |
| PspN4I | GGNNCC | 3 cut(s) | 1140, 1640, 2054 |
| PspPI | GGNCC | 1 cut(s) | 1639 |
| PstI | CTGCAG | 1 cut(s) | 23 |
| PstNI | CAGNNNCTG | 1 cut(s) | 995 |
| PsuI | RGATCY | 1 cut(s) | 1879 |
| PsyI | GACNNNGTC | 1 cut(s) | 1463 |
| PvuII | CAGCTG | 1 cut(s) | 487 |
| RsaI | GTAC | 2 cut(s) | 25, 842 |
| RsaNI | GTAC | 2 cut(s) | 24, 841 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1617 |
| SacI | GAGCTC | 1 cut(s) | 1320 |
| SapI | GCTCTTC | 1 cut(s) | 1325 |
| SatI | GCNGC | 4 cut(s) | 181, 184, 1708, 2069 |
| Sau3AI | GATC | 4 cut(s) | 661, 1093, 1152, 1879 |
| Sau96I | GGNCC | 1 cut(s) | 1639 |
| ScaI | AGTACT | 1 cut(s) | 25 |
| SchI | GAGTC | 3 cut(s) | 368, 937, 1663 |
| ScrFI | CCNGG | 1 cut(s) | 2027 |
| SduI | GDGCHC | 1 cut(s) | 1320 |
| SfaNI | GCATC | 3 cut(s) | 301, 1287, 1297 |
| SfcI | CTRYAG | 4 cut(s) | 19, 970, 1600, 1915 |
| SinI | GGWCC | 1 cut(s) | 1639 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1617 |
| SmlI | CTYRAG | 2 cut(s) | 406, 1229 |
| SmoI | CTYRAG | 2 cut(s) | 406, 1229 |
| SnaBI | TACGTA | 1 cut(s) | 945 |
| SsiI | CCGC | 5 cut(s) | 184, 292, 1216, 1708, 1954 |
| SspI | AATATT | 2 cut(s) | 637, 1872 |
| SspMI | CTAG | 5 cut(s) | 453, 1548, 1673, 1946, 2101 |
| SstI | GAGCTC | 1 cut(s) | 1320 |
| StyD4I | CCNGG | 1 cut(s) | 2025 |
| StyI | CCWWGG | 1 cut(s) | 1864 |
| TaaI | ACNGT | 2 cut(s) | 45, 1690 |
| TaiI | ACGT | 5 cut(s) | 842, 947, 1262, 1367, 2003 |
| TaqI | TCGA | 8 cut(s) | 142, 298, 474, 515, 567, 1076, 1114, 1485 |
| TatI | WGTACW | 1 cut(s) | 23 |
| TauI | GCSGC | 2 cut(s) | 186, 1710 |
| TfiI | GAWTC | 6 cut(s) | 68, 277, 325, 610, 1596, 1822 |
| TscAI | CASTG | 2 cut(s) | 610, 1693 |
| TseFI | GTSAC | 4 cut(s) | 730, 1255, 1465, 2020 |
| TseI | GCWGC | 2 cut(s) | 180, 2068 |
| Tsp45I | GTSAC | 4 cut(s) | 730, 1255, 1465, 2020 |
| TspDTI | ATGAA | 7 cut(s) | 39, 1026, 1136, 1236, 1370, 1563, 2076 |
| TspRI | CASTG | 2 cut(s) | 610, 1693 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1463 |
| VpaK11BI | GGWCC | 1 cut(s) | 1639 |
| VspI | ATTAAT | 2 cut(s) | 1481, 1800 |
| XapI | RAATTY | 6 cut(s) | 190, 209, 241, 897, 1002, 2096 |
| XbaI | TCTAGA | 1 cut(s) | 1547 |
| XceI | RCATGY | 2 cut(s) | 1616, 2021 |
| XmiI | GTMKAC | 1 cut(s) | 1918 |
| XmnI | GAANNNNTTC | 1 cut(s) | 786 |
| XspI | CTAG | 5 cut(s) | 453, 1548, 1673, 1946, 2101 |
| ZrmI | AGTACT | 1 cut(s) | 25 |
| Zsp2I | ATGCAT | 1 cut(s) | 757 |