Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

51146524 .. 51151846

Gene Structure 5323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

ATGGGCACCCAAAGGCCAATTCTGCAAGTGAGAACCTTCACAAGACACCCAGTGTTTCACTCTCAGAGACCCCATTCTATATCTTCTTGCCCATCAAACCGCTACTTGGAAAATGGTGTTGCACTCGTGCAGTCCAAGCGTACCAGCCAAGAACCCTTTTTATCAGCTTCTCTGTCAGATTCTCTTTTGGTAGAGAAGCTTTTGTTGGGTTTGAAGCAAGGTAATCTCAATCATCTGCGTAACTATCTGTTTCGGTTAAACCCACTTCTTGTTGTTGAACTTGTTTCCCGTTGCCGTGAAAATCTGCATCTGGGTCTGAAATTCGTTGACTTGATTATGTTAAATTGTCCGAATTTCAAGCACTCGTCGCAGTCTTTGAGTGCAATGATTCACGTTTTGGTCAGGGCCCGAAGGGCTTCGGATGCTCAAGCTTTAATGCTTAGAATGGTTAGGAAGAGTGGCGTCTCCCGTGTTGAAATAGTTGAGTCTTTGGTTTCAACCTGTAGCAGTTGCGGCTCTAGCTGCTTCGTTTTTGACTTGTTGCTTAGGACTTATGTGCAAGCTAGGAAGTTGAGAGAAGGGTTCGAGGCGTTTAAGGCATTTAGGAGCAAGGGAGTTGCTATTTCGATAAATGCTGCTAATAGTCTTCTTGGTGGGCTTGTGAAGGTAGGGTGGGTAGATTTGGCATGGGAAGTGTATGGGGAAGTTGTTAGCAGCGGGGTTCAGTTAAATGTTTATACACTAAACATTATGGTTAATGCCTTGTGTAAAGATGGCAAAATCAATAGGGTTAAATTGTTCATATCGGACATGGCTGAGAAGGGGGTTTGTACAGATATTGTGACATATAATACTCTAATCAATGCCTATTGTCGTGAAGGGCTTGTAGAAGAAGCTTTCCTGTTGAAAAACTCTATGGCTTCTAAGGGTTTGAGGCCGGAGCTTTTCACATACAATGCTATCATAAATGGATTATGTAGGGTAGGAAATTCTGCAAGGGCAAAGGAAGTTTTGTATGAGATGTTGCAGAATGGATTAAGCCCTGATACTACTACCTTTAATACACTGCTGGTTGAGAGTTGTAGAAAAGATAATATTTCAGAGGCTGAAGGAATTTTCCGTGAAATGTCATGTAGAGGTGTTGTTCCTGATTTAGTCAGCTTCAGTTCAATAATTGGGGTGCTTTCGAGGAATGGACATAGTGATCGTGCCCTATTATATTTTCAAGAAATGAAAAATGCAGGCTTGGTTCCAGATAATGTGATCTATACTATCCTTATAGACGGATATTGTAGAAATGGCAAGATGTCAGAGGCGTTGAAGTTGCGGGATGAAATGCTTGAGCAAGGCTGCGTGGTGGATGTTATTACCTTCAATACTATTTTAAATGGACTTTGTCGGGAGAAGATGCTTGCTGATGCAGAAAAACTCTTCAATGAGATGGTGGAAAGGGGTGTCTTTCCAGATTTTTATACTTTCACAACACTTATTCATGGTTATTGTAAAAACGGGAATATGGCTAAATCCTTAAGTTTGTTCGAGGCAATGATTTGTAAAAATATCAAGCCTGATATTGTCACGTACAACACATTGATTGATGGATTCTGCAAAGTAGGTGACATGGATAAAGCTAAGGAGCTATGGAGTGACATGGTTTCTAGAAGAATATCCCCTAATTACATTTCATATGGCATTCTTATCAATGGATTCTGTAGCATGGGACTTGTCCATGAGGCACTTCATTTGTGGGACCAGATGATTGAAGAAGGTATCAAACCCACTCTAGTGACTTGTAATACTGTCATAAAGGGCTATAGCCGCTCTGGTGACACAGAAAAGGCATATGAGTTCTTAGGCAAAATGATTTCAAAAGGAATTGGTCCTGATAGTATTACTTACAATACTCTGATTAATGGATATGTAAAAGAAGAAAACCTGGATAAAGCCTTTTTTTCAGTTAAGGAGATGGAAAAGCAAGGACTACTGCCAGATGTGATTACATACAATGTCATTCTATATGGGTTCTGTAGACAGGGTAGACTGCATGAAGCTGAGTTAGTTTTGCGAAAGATGATTGAGAAAGGTGTAAATCCTGATAGATCCACTTATACGTCATTGATAAATGGACATGTGTCCCAGGACAATTTGAGAGAGGCATTCCGCTACCATGATGAAATGCTGCAGAGGGGATTTGTACCAGATGATGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

737

Amino Acids

82.84

Weight (kDa)

8.23

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	212 - 257	8.1e-10	PPR repeat family
PPR_long	PF17177	228 - 360	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	269 - 323	1.1e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	273 - 375	1.2e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	274 - 306	4.5e-12	PPR repeat
PPR_2	PF13041	279 - 327	1.1e-17	PPR repeat family
PPR	PF01535	281 - 311	2.3e-08	PPR repeat
PPR_3	PF13812	302 - 357	1.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	309 - 341	6.3e-09	PPR repeat
PPR_2	PF13041	314 - 361	1.7e-11	PPR repeat family
PPR	PF01535	316 - 346	2.1e-06	PPR repeat
PPR_3	PF13812	340 - 395	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	344 - 377	2.2e-06	PPR repeat
PPR_2	PF13041	348 - 394	3e-09	PPR repeat family
PPR_2	PF13041	383 - 429	6.6e-09	PPR repeat family
TPR_24	PF23276	391 - 515	1.6e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	408 - 463	9.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	415 - 446	3.5e-13	PPR repeat
PPR_2	PF13041	418 - 467	2.9e-18	PPR repeat family
PPR	PF01535	421 - 451	2.8e-10	PPR repeat
PPR_long	PF17177	432 - 567	1.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	450 - 482	1.8e-12	PPR repeat
PPR_2	PF13041	454 - 502	1.3e-19	PPR repeat family
PPR	PF01535	456 - 486	6.4e-08	PPR repeat
PPR_1	PF12854	484 - 516	3.9e-11	PPR repeat
PPR	PF01535	491 - 521	1.2e-07	PPR repeat
PPR_2	PF13041	492 - 537	7.1e-17	PPR repeat family
PPR_3	PF13812	511 - 570	2.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	519 - 552	1.2e-14	PPR repeat
PPR_2	PF13041	523 - 571	1.1e-19	PPR repeat family
PPR	PF01535	526 - 556	1.2e-09	PPR repeat
PPR_1	PF12854	556 - 586	2.3e-09	PPR repeat
PPR	PF01535	561 - 591	2.4e-07	PPR repeat
PPR_2	PF13041	562 - 597	1.3e-07	PPR repeat family
PPR_long	PF17177	576 - 711	5.5e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	582 - 642	3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	590 - 621	2.6e-06	PPR repeat
PPR_2	PF13041	593 - 640	4.3e-15	PPR repeat family
PPR	PF01535	596 - 626	9.6e-08	PPR repeat
PPR_1	PF12854	624 - 657	6.6e-08	PPR repeat
PPR_2	PF13041	628 - 677	2.6e-16	PPR repeat family
PPR	PF01535	631 - 661	4.8e-06	PPR repeat
PPR_3	PF13812	653 - 708	2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	660 - 691	7.3e-12	PPR repeat
PPR_2	PF13041	663 - 710	6e-15	PPR repeat family
PPR	PF01535	666 - 696	4.8e-07	PPR repeat
PPR	PF01535	701 - 731	5.7e-06	PPR repeat
PPR_2	PF13041	702 - 735	4.2e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	1821
AccI	GTMKAC	2 cut(s)	2029, 2038
AciI	CCGC	6 cut(s)	100, 513, 717, 1327, 1819, 2161
AclWI	GGATC	1 cut(s)	2094
AcsI	RAATTY	5 cut(s)	320, 352, 988, 1113, 2207
AcuI	CTGAAG	2 cut(s)	1128, 1147
AcyI	GRCGYC	1 cut(s)	462
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	4 cut(s)	142, 832, 1583, 2196
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	1528
AflIII	ACRYGT	1 cut(s)	2128
AjnI	CCWGG	2 cut(s)	1935, 2136
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 188, 220
AleI	CACNNNNGTG	1 cut(s)	1784
Alw26I	GTCTC	2 cut(s)	61, 469
AlwI	GGATC	1 cut(s)	2094
AlwNI	CAGNNNCTG	1 cut(s)	1106
AoxI	GGCC	3 cut(s)	14, 405, 935
ApaI	GGGCCC	1 cut(s)	409
ApeKI	GCWGC	5 cut(s)	522, 635, 714, 1350, 2179
ApoI	RAATTY	5 cut(s)	320, 352, 988, 1113, 2207
AseI	ATTAAT	1 cut(s)	1911
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	4 cut(s)	405, 406, 1750, 1880
AsuHPI	GGTGA	2 cut(s)	1628, 1838
AvaII	GGWCC	2 cut(s)	1750, 1880
BaeGI	GKGCMC	3 cut(s)	8, 409, 1213
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	409
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	638
BbvI	GCAGC	5 cut(s)	509, 622, 726, 1337, 2166
BccI	CCATC	5 cut(s)	100, 767, 1435, 1592, 1960
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	1937, 2138
BcoDI	GTCTC	2 cut(s)	61, 469
BfaI	CTAG	5 cut(s)	519, 564, 1659, 1784, 2212
BfmI	CTRYAG	5 cut(s)	502, 1711, 1813, 2026, 2180
BfrI	CTTAAG	1 cut(s)	1528
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	7 cut(s)	514, 523, 636, 715, 1351, 1819, 2180
BlsI	GCNGC	7 cut(s)	515, 524, 637, 716, 1352, 1820, 2181
Bme1390I	CCNGG	2 cut(s)	1937, 2138
Bme18I	GGWCC	2 cut(s)	1750, 1880
BmgT120I	GGNCC	4 cut(s)	405, 406, 1750, 1880
BmiI	GGNNCC	4 cut(s)	7, 407, 1251, 1751
BmrFI	CCNGG	2 cut(s)	1937, 2138
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	4 cut(s)	316, 412, 1398, 1408
BmuI	ACTGGG	1 cut(s)	44
BoxI	GACNNNNGTC	1 cut(s)	2131
BpiI	GAAGAC	1 cut(s)	638
Bpu10I	CCTNAGC	2 cut(s)	545, 1632
BpuEI	CTTGAG	2 cut(s)	411, 1361
BsaAI	YACGTR	1 cut(s)	1581
BsaHI	GRCGYC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	2136
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	2 cut(s)	390, 1551
BseBI	CCWGG	2 cut(s)	1937, 2138
BseDI	CCNNGG	1 cut(s)	2136
BseGI	GGATG	3 cut(s)	427, 1336, 1366
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	2 cut(s)	390, 1551
BseMII	CTCAG	3 cut(s)	77, 807, 2043
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	3 cut(s)	8, 409, 1213
BseXI	GCAGC	5 cut(s)	509, 622, 726, 1337, 2166
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	16, 407, 937
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	938
BslFI	GGGAC	3 cut(s)	1734, 1763, 2119
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	61, 469
BsmBI	CGTCTC	1 cut(s)	469
BsmFI	GGGAC	3 cut(s)	1734, 1763, 2119
BsmI	GAATGC	2 cut(s)	1692, 2156
BsnI	GGCC	3 cut(s)	16, 407, 937
Bso31I	GGTCTC	1 cut(s)	61
Bsp120I	GGGCCC	1 cut(s)	405
Bsp1286I	GDGCHC	3 cut(s)	8, 409, 1213
Bsp1407I	TGTACA	1 cut(s)	830
Bsp143I	GATC	3 cut(s)	1204, 1263, 2099
BspACI	CCGC	6 cut(s)	100, 513, 717, 1327, 1819, 2161
BspANI	GGCC	3 cut(s)	16, 407, 937
BspCNI	CTCAG	3 cut(s)	76, 808, 2044
BspLI	GGNNCC	4 cut(s)	7, 407, 1251, 1751
BspMAI	CTGCAG	1 cut(s)	2184
BspPI	GGATC	1 cut(s)	2094
BspT107I	GGYRCC	1 cut(s)	5
BspTI	CTTAAG	1 cut(s)	1528
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	1821
BsrDI	GCAATG	2 cut(s)	390, 1551
BsrGI	TGTACA	1 cut(s)	830
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	2136
BssMI	GATC	3 cut(s)	1204, 1263, 2099
BssNI	GRCGYC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	1937, 2138
Bst4CI	ACNGT	1 cut(s)	1801
Bst6I	CTCTTC	2 cut(s)	449, 1436
BstACI	GRCGYC	1 cut(s)	462
BstAFI	CTTAAG	1 cut(s)	1528
BstAUI	TGTACA	1 cut(s)	830
BstBAI	YACGTR	1 cut(s)	1581
BstC8I	GCNNGC	3 cut(s)	561, 1243, 1413
BstDEI	CTNAG	8 cut(s)	63, 440, 545, 816, 924, 1632, 1852, 2052
BstF5I	GGATG	3 cut(s)	427, 1336, 1366
BstKTI	GATC	3 cut(s)	1207, 1266, 2102
BstMAI	GTCTC	2 cut(s)	61, 469
BstMBI	GATC	3 cut(s)	1204, 1263, 2099
BstNI	CCWGG	2 cut(s)	1937, 2138
BstNSI	RCATGY	1 cut(s)	2132
BstPAI	GACNNNNGTC	1 cut(s)	2131
BstSCI	CCNGG	2 cut(s)	1935, 2136
BstSFI	CTRYAG	5 cut(s)	502, 1711, 1813, 2026, 2180
BstSLI	GKGCMC	3 cut(s)	8, 409, 1213
BstV1I	GCAGC	5 cut(s)	509, 622, 726, 1337, 2166
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	1 cut(s)	2099
BstYI	RGATCY	1 cut(s)	2099
BsuRI	GGCC	3 cut(s)	16, 407, 937
BtsCI	GGATG	3 cut(s)	427, 1336, 1366
BtsI	GCAGTG	1 cut(s)	1064
BtsIMutI	CAGTG	2 cut(s)	57, 1064
Cac8I	GCNNGC	3 cut(s)	561, 1243, 1413
CaiI	CAGNNNCTG	1 cut(s)	1106
Cfr13I	GGNCC	4 cut(s)	405, 406, 1750, 1880
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	4 cut(s)	141, 831, 1582, 2195
CviQI	GTAC	4 cut(s)	141, 831, 1582, 2195
DdeI	CTNAG	8 cut(s)	63, 440, 545, 816, 924, 1632, 1852, 2052
DpnI	GATC	3 cut(s)	1206, 1265, 2101
DpnII	GATC	3 cut(s)	1204, 1263, 2099
DraI	TTTAAA	1 cut(s)	1386
DraIII	CACNNNGTG	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	449, 1436
EarI	CTCTTC	2 cut(s)	449, 1436
Eco24I	GRGCYC	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	1750, 1880
Eco57I	CTGAAG	2 cut(s)	1128, 1147
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	2207
EcoRII	CCWGG	2 cut(s)	1935, 2136
EcoT38I	GRGCYC	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	469
FaqI	GGGAC	3 cut(s)	1734, 1763, 2119
FauI	CCCGC	2 cut(s)	710, 1320
FauNDI	CATATG	2 cut(s)	1687, 1843
FblI	GTMKAC	2 cut(s)	2029, 2038
Fnu4HI	GCNGC	7 cut(s)	514, 523, 636, 715, 1351, 1819, 2180
FokI	GGATG	3 cut(s)	434, 1343, 1373
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	7 cut(s)	514, 523, 636, 715, 1351, 1819, 2180
FspBI	CTAG	5 cut(s)	519, 564, 1659, 1784, 2212
GluI	GCNGC	7 cut(s)	514, 523, 636, 715, 1351, 1819, 2180
HaeIII	GGCC	3 cut(s)	16, 407, 937
HapII	CCGG	1 cut(s)	938
HgaI	GACGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	462
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	3 cut(s)	197, 429, 894
HinfI	GANTC	5 cut(s)	179, 388, 485, 1602, 1707
HpaII	CCGG	1 cut(s)	938
HphI	GGTGA	2 cut(s)	1628, 1838
Hpy166II	GTNNAC	3 cut(s)	328, 2030, 2039
Hpy188I	TCNGA	9 cut(s)	66, 178, 318, 351, 421, 808, 1102, 1312, 1908
Hpy188III	TCNNGA	9 cut(s)	875, 1148, 1226, 1253, 1400, 1463, 1659, 1883, 2093
Hpy8I	GTNNAC	3 cut(s)	328, 2030, 2039
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	9 cut(s)	46, 405, 572, 658, 814, 872, 1103, 1381, 1760
HpyCH4III	ACNGT	1 cut(s)	1801
HpyCH4IV	ACGT	3 cut(s)	393, 1580, 2111
HpyF3I	CTNAG	8 cut(s)	63, 440, 545, 816, 924, 1632, 1852, 2052
HpySE526I	ACGT	3 cut(s)	393, 1580, 2111
Hsp92I	GRCGYC	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	1204, 1263, 2099
LmnI	GCTCC	3 cut(s)	606, 940, 1636
Lsp1109I	GCAGC	5 cut(s)	509, 622, 726, 1337, 2166
LweI	GCATC	4 cut(s)	316, 412, 1398, 1408
MaeI	CTAG	5 cut(s)	519, 564, 1659, 1784, 2212
MaeII	ACGT	3 cut(s)	393, 1580, 2111
MaeIII	GTNAC	7 cut(s)	239, 841, 1576, 1616, 1646, 1786, 1826
MalI	GATC	3 cut(s)	1206, 1265, 2101
MbiI	CCGCTC	1 cut(s)	1821
MboI	GATC	3 cut(s)	1204, 1263, 2099
MboII	GAAGA	9 cut(s)	75, 466, 638, 902, 1417, 1423, 1674, 1775, 1940
MflI	RGATCY	1 cut(s)	2099
MhlI	GDGCHC	3 cut(s)	8, 409, 1213
MlyI	GAGTC	1 cut(s)	494
MroXI	GAANNNNTTC	1 cut(s)	415
MslI	CAYNNNNRTG	1 cut(s)	1784
MspA1I	CMGCKG	1 cut(s)	717
MspCI	CTTAAG	1 cut(s)	1528
MspI	CCGG	1 cut(s)	938
MspR9I	CCNGG	2 cut(s)	1937, 2138
Mva1269I	GAATGC	2 cut(s)	1692, 2156
MvaI	CCWGG	2 cut(s)	1937, 2138
NdeI	CATATG	2 cut(s)	1687, 1843
NdeII	GATC	3 cut(s)	1204, 1263, 2099
NlaIV	GGNNCC	4 cut(s)	7, 407, 1251, 1751
NmuCI	GTSAC	6 cut(s)	841, 1576, 1616, 1646, 1786, 1826
NspI	RCATGY	1 cut(s)	2132
OliI	CACNNNNGTG	1 cut(s)	1784
PciI	ACATGT	1 cut(s)	2128
PctI	GAATGC	2 cut(s)	1692, 2156
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	4 cut(s)	179, 388, 1602, 1707
PflFI	GACNNNGTC	1 cut(s)	1395
PkrI	GCNGC	7 cut(s)	515, 524, 637, 716, 1352, 1820, 2181
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	1581
PscI	ACATGT	1 cut(s)	2128
PshAI	GACNNNNGTC	1 cut(s)	2131
PshBI	ATTAAT	1 cut(s)	1911
Psp6I	CCWGG	2 cut(s)	1935, 2136
PspGI	CCWGG	2 cut(s)	1935, 2136
PspN4I	GGNNCC	4 cut(s)	7, 407, 1251, 1751
PspOMI	GGGCCC	1 cut(s)	405
PspPI	GGNCC	4 cut(s)	405, 406, 1750, 1880
PstI	CTGCAG	1 cut(s)	2184
PstNI	CAGNNNCTG	1 cut(s)	1106
PsuI	RGATCY	1 cut(s)	2099
PsyI	GACNNNGTC	1 cut(s)	1395
RsaI	GTAC	4 cut(s)	142, 832, 1583, 2196
RsaNI	GTAC	4 cut(s)	141, 831, 1582, 2195
RseI	CAYNNNNRTG	1 cut(s)	1784
SatI	GCNGC	7 cut(s)	514, 523, 636, 715, 1351, 1819, 2180
Sau3AI	GATC	3 cut(s)	1204, 1263, 2099
Sau96I	GGNCC	4 cut(s)	405, 406, 1750, 1880
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	1937, 2138
SduI	GDGCHC	3 cut(s)	8, 409, 1213
SfaNI	GCATC	4 cut(s)	316, 412, 1398, 1408
SfcI	CTRYAG	5 cut(s)	502, 1711, 1813, 2026, 2180
SinI	GGWCC	2 cut(s)	1750, 1880
SmiMI	CAYNNNNRTG	1 cut(s)	1784
SmlI	CTYRAG	3 cut(s)	426, 1340, 1528
SmoI	CTYRAG	3 cut(s)	426, 1340, 1528
SsiI	CCGC	6 cut(s)	100, 513, 717, 1327, 1819, 2161
SspI	AATATT	1 cut(s)	1096
SspMI	CTAG	5 cut(s)	519, 564, 1659, 1784, 2212
StyD4I	CCNGG	2 cut(s)	1935, 2136
TaaI	ACNGT	1 cut(s)	1801
TaiI	ACGT	3 cut(s)	396, 1583, 2114
TaqI	TCGA	4 cut(s)	585, 626, 1187, 1539
TatI	WGTACW	1 cut(s)	830
TauI	GCSGC	2 cut(s)	516, 1821
TfiI	GAWTC	4 cut(s)	179, 388, 1602, 1707
TscAI	CASTG	2 cut(s)	57, 1071
TseFI	GTSAC	6 cut(s)	841, 1576, 1616, 1646, 1786, 1826
TseI	GCWGC	5 cut(s)	522, 635, 714, 1350, 2179
Tsp45I	GTSAC	6 cut(s)	841, 1576, 1616, 1646, 1786, 1826
TspDTI	ATGAA	8 cut(s)	790, 1247, 1347, 1481, 1674, 1730, 2061, 2187
TspGWI	ACGGA	2 cut(s)	1109, 1299
TspRI	CASTG	2 cut(s)	57, 1071
Tth111I	GACNNNGTC	1 cut(s)	1395
Vha464I	CTTAAG	1 cut(s)	1528
VpaK11BI	GGWCC	2 cut(s)	1750, 1880
VspI	ATTAAT	1 cut(s)	1911
XapI	RAATTY	5 cut(s)	320, 352, 988, 1113, 2207
XbaI	TCTAGA	1 cut(s)	1658
XceI	RCATGY	1 cut(s)	2132
XmiI	GTMKAC	2 cut(s)	2029, 2038
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	5 cut(s)	519, 564, 1659, 1784, 2212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.