Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

52276849 .. 52282168

Gene Structure 5320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGGGCACCCAAAGGCCAATTCTGCAAGTGAGAACCTTCACAAGACACCCAGTGTTTCACTCTCAGAGACCCCATTCTATATCTTGTTGCCCATCAAACCGCTACTTGGAAAATGGTGTTACACTCGTGCAGTCCAAGCGTAGCAGCCAAGAACCCTTTTTGTCAGATTCTCTTTTGGTAGAGAAGCTTTTGTTGGGTTTGAAGCAAGGTAATCTCAATTGTCTGCGTAACTATCTGTTTCGGTTAAACCCACTTCTTGTTGTTGAACTTGTTTCCCGTTGCCGTGAAAATCTGCATCTGGGTCTGAAATTCGTTGACTTGGTTATGTTAAACTGTCCGAGTTTCAAGCACTCGTCACAGTCTTTGAGTGCAATGATTCACATTTTGGTCAGGGCCCGAAGGGCTTCGGATGCTCAAGCTTTAATGCTTAGAATGGTTAGGAAGAGCGGCGTCTCCCGTGTTGAAATAGTTGAGTCTTTGGTTTCAACCTGTAGCAGTTGCGGCTCTAGCTGCTTCGTTTTTGACTTGTTGCTTAGGACTTATGTGCAAGCTAGGAAGTTGAGAGAAGGGTTCGAGGCGTTTAAGGCATTTAGGAGCAAGGGAGTTGCTGTTTCGATAAATGCTGCTAATAGTCTTCTTGGTGGGCTTGTGAAGGTAGGGTGGGTAGATTTGGCATGGCAAGTGTATGGGGAAGTTGTTAGCAGCGGGGTTCAGTTAAATGTTTATACGCTAAACATTATGGTTAATGCCTTGTGTAAAGATGGCAAAATCGATAGGGTTAAATTGTTCATATCGAACATGGCTGAGAAGGGGGTTTGTACAGATATTGTGACATATAATACTCTAATCAATGCCTATTGTCGTCAAGGGCTTGTAGAAGAAGCTTTCCAGTTGAAACACTCTATGGCTTCTAAGGGTTTGAGGCCGGAGCTTTTCACATACAATGCTATCATAAATGGATTATGTAGGGTAGGAAATTCTGCAAGGGCAAAGGAAGTTTTGTATGAGATGTTGCAGAATGGATTAAGTCCTGATACTACTACCTTTAATACACTGCTGGTTGAGAGTTGTAGAAAAGATAATATTTCAGAGGCTGAAGGAATTTTCCGTGAAATGTCATGTAGAGGTGTTGTTCCTGATTTAGTCAGCTTCAGTTCAATAATTGGGGTGCTTTCGAGGAATGGACATAGTGACCGTGCCCTATTATATTTTCAAGAAATGAAAAATGCAGGCTTGGTTCCAGATAATGTGATCTATACTATCCTTATAGATGGATATTGTAGAAATGGCAAGATGTCAGAGGCGTTGAAGTTGCGGGATGAAATGCTTGAGCAAGGCTGCGTGGTGGATGTTATTACCTTCAATACTATTTTAAATGGACTTTGTCGGGAGAAGATGCTTGCCGATGCAGAAAAACTCTTCAATGAGATGGTGGAAAGAGGTGTCTTTCCAGATTTTTATACTTTCACAACACTTATTCATGGTTATTGTAAAAACGGGAATATGGCTAAATCCTTAAGTTTGTTTGAGGCAATGATTTGTAAAAATATCAAGCCTGATATTGTCACGTACAACACATTGATTGATGGATTCTGCAAAGTAGGTGACATGGATAAAGCTAAGGAGCTATGGAGTGACATGATTTCTAGAAGAATATTCCCTAATTACATTTCATATGGCATTCTTATCAATGGATTCTGTAGCATGGGACTTGTCCATGAGGCGCTTCATTTGTGGGACCAGATGATTGAAGAAGGTATCAAACCCACTCTAGTGACTTGTAATACTGTCATAAAGGGCTATAGCCGCTCTGGTGACACAGAAAAGGCATATGAGTTCTTAGGCAAAATGATTTCAAAAGGAATTGTTCCTGATAGTATTACTTACAATACTCTGATTAATGGATATGTAAAAGAAGAAAACCTGGATAAAGCCTTTTTTTCAGTTAAGGAGATGGAAAAGCAAGGACTACTGCCAGATGTGATTACATACAATGTCATTCTATATGGGTTCTGTAGACAAGGTAGACTGCATGAAGCTGAGTTAGTTTTGCGAAAGATGATTGAGAAAGGTGTAAATCCTGATAGATCCACTTATACGTCATTAATAAATGGACATGTGTCCCAGGACAATTTGAGAGAGGCATTCCGCTACCATGATGAAATGCTGCAGAGGGGATTTGTACCAGATGATGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

733

Amino Acids

82.59

Weight (kDa)

8.39

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	208 - 253	7.3e-10	PPR repeat family
PPR_long	PF17177	222 - 335	1.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	230 - 286	6.7e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	265 - 319	5.6e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	268 - 371	1.5e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	270 - 302	1.2e-12	PPR repeat
PPR_2	PF13041	275 - 323	2.6e-18	PPR repeat family
PPR	PF01535	277 - 307	1.3e-08	PPR repeat
PPR_3	PF13812	298 - 353	4.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	305 - 337	6.2e-09	PPR repeat
PPR_2	PF13041	310 - 357	1.7e-11	PPR repeat family
PPR	PF01535	312 - 342	2.1e-06	PPR repeat
PPR_3	PF13812	333 - 391	4.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	340 - 373	2.2e-06	PPR repeat
PPR_2	PF13041	345 - 391	1.3e-08	PPR repeat family
PPR_2	PF13041	379 - 425	6.5e-09	PPR repeat family
TPR_24	PF23276	387 - 511	1.6e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	404 - 459	9.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	411 - 442	3.5e-13	PPR repeat
PPR_2	PF13041	414 - 463	2.9e-18	PPR repeat family
PPR	PF01535	417 - 447	2.8e-10	PPR repeat
PPR_long	PF17177	427 - 562	8.9e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	446 - 478	1.8e-12	PPR repeat
PPR_2	PF13041	450 - 498	1.3e-19	PPR repeat family
PPR	PF01535	452 - 482	6.4e-08	PPR repeat
PPR_1	PF12854	480 - 512	3.9e-11	PPR repeat
PPR	PF01535	487 - 517	1.2e-07	PPR repeat
PPR_2	PF13041	488 - 533	7.8e-17	PPR repeat family
PPR_3	PF13812	507 - 566	2.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	515 - 547	1.7e-14	PPR repeat
PPR_2	PF13041	519 - 567	8.1e-19	PPR repeat family
PPR	PF01535	522 - 552	1.1e-09	PPR repeat
PPR_1	PF12854	552 - 582	2.7e-09	PPR repeat
PPR	PF01535	557 - 587	2.4e-07	PPR repeat
PPR_2	PF13041	558 - 595	5.5e-08	PPR repeat family
PPR_long	PF17177	572 - 707	5e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	578 - 638	3.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	586 - 617	2.6e-06	PPR repeat
PPR_2	PF13041	589 - 638	5.8e-16	PPR repeat family
PPR	PF01535	592 - 622	9.5e-08	PPR repeat
PPR_1	PF12854	620 - 653	8.4e-09	PPR repeat
PPR_2	PF13041	624 - 673	2.6e-16	PPR repeat family
PPR	PF01535	627 - 657	4.7e-06	PPR repeat
PPR_3	PF13812	649 - 704	2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	656 - 687	7.2e-12	PPR repeat
PPR_2	PF13041	659 - 706	6e-15	PPR repeat family
PPR	PF01535	662 - 692	4.7e-07	PPR repeat
PPR	PF01535	697 - 727	5.7e-06	PPR repeat
PPR_2	PF13041	698 - 731	6.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccBSI	CCGCTC	2 cut(s)	447, 1809
AccI	GTMKAC	2 cut(s)	2017, 2026
AciI	CCGC	7 cut(s)	100, 447, 501, 705, 1315, 1807, 2149
AclWI	GGATC	1 cut(s)	2082
AcsI	RAATTY	4 cut(s)	308, 976, 1101, 2195
AcuI	CTGAAG	2 cut(s)	1116, 1135
AcyI	GRCGYC	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	3 cut(s)	820, 1571, 2184
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	1516
AflIII	ACRYGT	1 cut(s)	2116
AjnI	CCWGG	2 cut(s)	1923, 2124
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 176, 208
AleI	CACNNNNGTG	1 cut(s)	1772
Alw26I	GTCTC	2 cut(s)	61, 457
AlwI	GGATC	1 cut(s)	2082
AlwNI	CAGNNNCTG	1 cut(s)	1094
AoxI	GGCC	3 cut(s)	14, 393, 923
ApaI	GGGCCC	1 cut(s)	397
ApeKI	GCWGC	6 cut(s)	144, 510, 623, 702, 1338, 2167
ApoI	RAATTY	4 cut(s)	308, 976, 1101, 2195
AseI	ATTAAT	2 cut(s)	1899, 2105
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	1726
AspS9I	GGNCC	3 cut(s)	393, 394, 1738
AsuHPI	GGTGA	2 cut(s)	1616, 1826
AvaII	GGWCC	1 cut(s)	1738
BaeGI	GKGCMC	3 cut(s)	8, 397, 1201
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	397
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	626
BbvI	GCAGC	6 cut(s)	156, 497, 610, 714, 1325, 2154
BccI	CCATC	6 cut(s)	100, 755, 1265, 1423, 1580, 1948
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	2 cut(s)	1925, 2126
BcoDI	GTCTC	2 cut(s)	61, 457
BfaI	CTAG	5 cut(s)	507, 552, 1647, 1772, 2200
BfmI	CTRYAG	5 cut(s)	490, 1699, 1801, 2014, 2168
BfoI	RGCGCY	1 cut(s)	1727
BfrI	CTTAAG	1 cut(s)	1516
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	9 cut(s)	145, 448, 502, 511, 624, 703, 1339, 1807, 2168
BlsI	GCNGC	9 cut(s)	146, 449, 503, 512, 625, 704, 1340, 1808, 2169
Bme1390I	CCNGG	2 cut(s)	1925, 2126
Bme18I	GGWCC	1 cut(s)	1738
BmgT120I	GGNCC	3 cut(s)	393, 394, 1738
BmiI	GGNNCC	4 cut(s)	7, 395, 1239, 1739
BmrFI	CCNGG	2 cut(s)	1925, 2126
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	4 cut(s)	304, 400, 1386, 1396
BmuI	ACTGGG	1 cut(s)	44
BoxI	GACNNNNGTC	1 cut(s)	2119
BpiI	GAAGAC	1 cut(s)	626
Bpu10I	CCTNAGC	2 cut(s)	533, 1620
BpuEI	CTTGAG	2 cut(s)	399, 1349
Bsa29I	ATCGAT	1 cut(s)	771
BsaAI	YACGTR	1 cut(s)	1569
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	2124
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	50, 889
Bse3DI	GCAATG	2 cut(s)	378, 1539
BseBI	CCWGG	2 cut(s)	1925, 2126
BseCI	ATCGAT	1 cut(s)	771
BseDI	CCNNGG	1 cut(s)	2124
BseGI	GGATG	3 cut(s)	415, 1324, 1354
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	2 cut(s)	378, 1539
BseMII	CTCAG	3 cut(s)	77, 795, 2031
BseNI	ACTGG	2 cut(s)	50, 889
BseSI	GKGCMC	3 cut(s)	8, 397, 1201
BseXI	GCAGC	6 cut(s)	156, 497, 610, 714, 1325, 2154
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	16, 395, 925
BshNI	GGYRCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	926
BslFI	GGGAC	3 cut(s)	1722, 1751, 2107
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	61, 457
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	3 cut(s)	1722, 1751, 2107
BsmI	GAATGC	2 cut(s)	1680, 2144
BsnI	GGCC	3 cut(s)	16, 395, 925
Bso31I	GGTCTC	1 cut(s)	61
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	3 cut(s)	8, 397, 1201
Bsp1407I	TGTACA	1 cut(s)	818
Bsp143I	GATC	2 cut(s)	1251, 2087
BspACI	CCGC	7 cut(s)	100, 447, 501, 705, 1315, 1807, 2149
BspANI	GGCC	3 cut(s)	16, 395, 925
BspCNI	CTCAG	3 cut(s)	76, 796, 2032
BspDI	ATCGAT	1 cut(s)	771
BspLI	GGNNCC	4 cut(s)	7, 395, 1239, 1739
BspMAI	CTGCAG	1 cut(s)	2172
BspPI	GGATC	1 cut(s)	2082
BspQI	GCTCTTC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	5
BspTI	CTTAAG	1 cut(s)	1516
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	2 cut(s)	447, 1809
BsrDI	GCAATG	2 cut(s)	378, 1539
BsrGI	TGTACA	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	50, 889
BssECI	CCNNGG	1 cut(s)	2124
BssMI	GATC	2 cut(s)	1251, 2087
BssNI	GRCGYC	1 cut(s)	450
BssSI	CACGAG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	1925, 2126
Bst4CI	ACNGT	4 cut(s)	335, 360, 1196, 1789
Bst6I	CTCTTC	2 cut(s)	437, 1424
BstACI	GRCGYC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	1516
BstAUI	TGTACA	1 cut(s)	818
BstBAI	YACGTR	1 cut(s)	1569
BstC8I	GCNNGC	3 cut(s)	549, 1231, 1401
BstDEI	CTNAG	8 cut(s)	63, 428, 533, 804, 912, 1620, 1840, 2040
BstF5I	GGATG	3 cut(s)	415, 1324, 1354
BstH2I	RGCGCY	1 cut(s)	1727
BstHHI	GCGC	1 cut(s)	1726
BstKTI	GATC	2 cut(s)	1254, 2090
BstMAI	GTCTC	2 cut(s)	61, 457
BstMBI	GATC	2 cut(s)	1251, 2087
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 136, 401, 410, 501, 507, 510, 584, 1806
BstNI	CCWGG	2 cut(s)	1925, 2126
BstNSI	RCATGY	1 cut(s)	2120
BstPAI	GACNNNNGTC	1 cut(s)	2119
BstSCI	CCNGG	2 cut(s)	1923, 2124
BstSFI	CTRYAG	5 cut(s)	490, 1699, 1801, 2014, 2168
BstSLI	GKGCMC	3 cut(s)	8, 397, 1201
BstV1I	GCAGC	6 cut(s)	156, 497, 610, 714, 1325, 2154
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	1 cut(s)	2087
BstYI	RGATCY	1 cut(s)	2087
Bsu15I	ATCGAT	1 cut(s)	771
BsuRI	GGCC	3 cut(s)	16, 395, 925
BsuTUI	ATCGAT	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	415, 1324, 1354
BtsI	GCAGTG	1 cut(s)	1052
BtsIMutI	CAGTG	2 cut(s)	57, 1052
Cac8I	GCNNGC	3 cut(s)	549, 1231, 1401
CaiI	CAGNNNCTG	1 cut(s)	1094
CfoI	GCGC	1 cut(s)	1726
Cfr13I	GGNCC	3 cut(s)	393, 394, 1738
ClaI	ATCGAT	1 cut(s)	771
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	819, 1570, 2183
CviQI	GTAC	3 cut(s)	819, 1570, 2183
DdeI	CTNAG	8 cut(s)	63, 428, 533, 804, 912, 1620, 1840, 2040
DpnI	GATC	2 cut(s)	1253, 2089
DpnII	GATC	2 cut(s)	1251, 2087
DraI	TTTAAA	1 cut(s)	1374
DraIII	CACNNNGTG	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	437, 1424
EarI	CTCTTC	2 cut(s)	437, 1424
Eco24I	GRGCYC	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	1738
Eco57I	CTGAAG	2 cut(s)	1116, 1135
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	2195
EcoRII	CCWGG	2 cut(s)	1923, 2124
EcoT38I	GRGCYC	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	457
FaqI	GGGAC	3 cut(s)	1722, 1751, 2107
FauI	CCCGC	2 cut(s)	698, 1308
FauNDI	CATATG	2 cut(s)	1675, 1831
FblI	GTMKAC	2 cut(s)	2017, 2026
Fnu4HI	GCNGC	9 cut(s)	145, 448, 502, 511, 624, 703, 1339, 1807, 2168
FokI	GGATG	3 cut(s)	422, 1331, 1361
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	9 cut(s)	145, 448, 502, 511, 624, 703, 1339, 1807, 2168
FspBI	CTAG	5 cut(s)	507, 552, 1647, 1772, 2200
GlaI	GCGC	1 cut(s)	1725
GluI	GCNGC	9 cut(s)	145, 448, 502, 511, 624, 703, 1339, 1807, 2168
HaeII	RGCGCY	1 cut(s)	1727
HaeIII	GGCC	3 cut(s)	16, 395, 925
HapII	CCGG	1 cut(s)	926
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	1 cut(s)	1726
Hin1I	GRCGYC	1 cut(s)	450
Hin6I	GCGC	1 cut(s)	1724
HinP1I	GCGC	1 cut(s)	1724
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	3 cut(s)	185, 417, 882
HinfI	GANTC	5 cut(s)	167, 376, 473, 1590, 1695
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	2 cut(s)	1616, 1826
Hpy166II	GTNNAC	3 cut(s)	316, 2018, 2027
Hpy188I	TCNGA	8 cut(s)	66, 166, 306, 339, 409, 1090, 1300, 1896
Hpy188III	TCNNGA	9 cut(s)	1031, 1136, 1214, 1241, 1388, 1451, 1647, 1871, 2081
Hpy8I	GTNNAC	3 cut(s)	316, 2018, 2027
HpyAV	CCTTC	8 cut(s)	46, 393, 560, 646, 802, 1091, 1369, 1748
HpyCH4III	ACNGT	4 cut(s)	335, 360, 1196, 1789
HpyCH4IV	ACGT	2 cut(s)	1568, 2099
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 136, 401, 410, 501, 507, 510, 584, 1806
HpyF3I	CTNAG	8 cut(s)	63, 428, 533, 804, 912, 1620, 1840, 2040
HpySE526I	ACGT	2 cut(s)	1568, 2099
Hsp92I	GRCGYC	1 cut(s)	450
HspAI	GCGC	1 cut(s)	1724
Kzo9I	GATC	2 cut(s)	1251, 2087
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	3 cut(s)	594, 928, 1624
Lsp1109I	GCAGC	6 cut(s)	156, 497, 610, 714, 1325, 2154
LweI	GCATC	4 cut(s)	304, 400, 1386, 1396
MaeI	CTAG	5 cut(s)	507, 552, 1647, 1772, 2200
MaeII	ACGT	2 cut(s)	1568, 2099
MalI	GATC	2 cut(s)	1253, 2089
MbiI	CCGCTC	2 cut(s)	447, 1809
MboI	GATC	2 cut(s)	1251, 2087
MboII	GAAGA	8 cut(s)	454, 626, 890, 1405, 1411, 1662, 1763, 1928
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	2087
MhlI	GDGCHC	3 cut(s)	8, 397, 1201
MlyI	GAGTC	1 cut(s)	482
MroXI	GAANNNNTTC	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	1772
MspA1I	CMGCKG	1 cut(s)	705
MspCI	CTTAAG	1 cut(s)	1516
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	2 cut(s)	1925, 2126
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	2 cut(s)	1680, 2144
MvaI	CCWGG	2 cut(s)	1925, 2126
MwoI	GCNNNNNNNGC	9 cut(s)	22, 136, 401, 410, 501, 507, 510, 584, 1806
NdeI	CATATG	2 cut(s)	1675, 1831
NdeII	GATC	2 cut(s)	1251, 2087
NlaIV	GGNNCC	4 cut(s)	7, 395, 1239, 1739
NmuCI	GTSAC	8 cut(s)	354, 829, 1190, 1564, 1604, 1634, 1774, 1814
NspI	RCATGY	1 cut(s)	2120
OliI	CACNNNNGTG	1 cut(s)	1772
PciI	ACATGT	1 cut(s)	2116
PciSI	GCTCTTC	1 cut(s)	437
PctI	GAATGC	2 cut(s)	1680, 2144
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	4 cut(s)	167, 376, 1590, 1695
PflFI	GACNNNGTC	1 cut(s)	1383
PkrI	GCNGC	9 cut(s)	146, 449, 503, 512, 625, 704, 1340, 1808, 2169
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Ppu21I	YACGTR	1 cut(s)	1569
PscI	ACATGT	1 cut(s)	2116
PshAI	GACNNNNGTC	1 cut(s)	2119
PshBI	ATTAAT	2 cut(s)	1899, 2105
Psp6I	CCWGG	2 cut(s)	1923, 2124
PspGI	CCWGG	2 cut(s)	1923, 2124
PspN4I	GGNNCC	4 cut(s)	7, 395, 1239, 1739
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	3 cut(s)	393, 394, 1738
PstI	CTGCAG	1 cut(s)	2172
PstNI	CAGNNNCTG	1 cut(s)	1094
PsuI	RGATCY	1 cut(s)	2087
PsyI	GACNNNGTC	1 cut(s)	1383
RsaI	GTAC	3 cut(s)	820, 1571, 2184
RsaNI	GTAC	3 cut(s)	819, 1570, 2183
RseI	CAYNNNNRTG	1 cut(s)	1772
SapI	GCTCTTC	1 cut(s)	437
SatI	GCNGC	9 cut(s)	145, 448, 502, 511, 624, 703, 1339, 1807, 2168
Sau3AI	GATC	2 cut(s)	1251, 2087
Sau96I	GGNCC	3 cut(s)	393, 394, 1738
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	1925, 2126
SduI	GDGCHC	3 cut(s)	8, 397, 1201
SfaNI	GCATC	4 cut(s)	304, 400, 1386, 1396
SfcI	CTRYAG	5 cut(s)	490, 1699, 1801, 2014, 2168
SinI	GGWCC	1 cut(s)	1738
SmiMI	CAYNNNNRTG	1 cut(s)	1772
SmlI	CTYRAG	3 cut(s)	414, 1328, 1516
SmoI	CTYRAG	3 cut(s)	414, 1328, 1516
SsiI	CCGC	7 cut(s)	100, 447, 501, 705, 1315, 1807, 2149
SspI	AATATT	2 cut(s)	1084, 1656
SspMI	CTAG	5 cut(s)	507, 552, 1647, 1772, 2200
StyD4I	CCNGG	2 cut(s)	1923, 2124
TaaI	ACNGT	4 cut(s)	335, 360, 1196, 1789
TaiI	ACGT	2 cut(s)	1571, 2102
TaqI	TCGA	5 cut(s)	573, 614, 771, 794, 1175
TatI	WGTACW	1 cut(s)	818
TauI	GCSGC	3 cut(s)	450, 504, 1809
TfiI	GAWTC	4 cut(s)	167, 376, 1590, 1695
TscAI	CASTG	2 cut(s)	57, 1059
TseFI	GTSAC	8 cut(s)	354, 829, 1190, 1564, 1604, 1634, 1774, 1814
TseI	GCWGC	6 cut(s)	144, 510, 623, 702, 1338, 2167
Tsp45I	GTSAC	8 cut(s)	354, 829, 1190, 1564, 1604, 1634, 1774, 1814
TspDTI	ATGAA	8 cut(s)	778, 1235, 1335, 1469, 1662, 1718, 2049, 2175
TspGWI	ACGGA	1 cut(s)	1097
TspRI	CASTG	2 cut(s)	57, 1059
Tth111I	GACNNNGTC	1 cut(s)	1383
Vha464I	CTTAAG	1 cut(s)	1516
VpaK11BI	GGWCC	1 cut(s)	1738
VspI	ATTAAT	2 cut(s)	1899, 2105
XapI	RAATTY	4 cut(s)	308, 976, 1101, 2195
XbaI	TCTAGA	1 cut(s)	1646
XceI	RCATGY	1 cut(s)	2120
XmiI	GTMKAC	2 cut(s)	2017, 2026
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	5 cut(s)	507, 552, 1647, 1772, 2200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.