Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000350.1

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

226732 .. 228510

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000350.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

atgcttagaatggttaggaagagtggcgtctcccgtgttgaaatagttgagtctttggtttcaacctgtagcagttgcggctctagctgcttcgtttttgacttgttgcttaggacttatgtgcaagctaggaagttgagagaagggttcgaggcgtttaaggcatttaggagcaagggagttgctgtttcgataaatgctgctaatagtcttcttggtgggcttgtgaaggtagggtgggtagatttggcatggcaagtgtatggggaagttgttagcagcggggttcagttaaatgtttatacgctaaacattatggttaatgccttgtgtaaagatggcaaaatcgatagggttaaattgttcatatcggacatggctgagaagggggtttgtacagatattgtgacatataatactctaatcaatgcctattgtcgtcaagggcttgtagaagaagctttccagttgaaaaactctatggcttctaagggtttgaggccggagcttttcacatacaatgctatcataaatggattatgtagggtaggaaattctgcaagggcaaaggaagttttgtatgagatgctgcagaatggattaaatcctgatactactacctttaatacactgctggttgagagttgtagaaaagataatatttcagaggctgaaggaattttccgtgaaatgtcatgtagaggtgttgttcctgatttagtcagcttcagttcaataattggggtgctttcgaggaatggacatagtgattgtgccctattatattttcaagaaatgaaaaatgcaagctttgttccagataatgtgatctatactatccttatagacggatattgtagaaatggcaagatgtcagaggcattgaagttgcgggatgaaatgcttgagcaaggctgcgtggtggatgttattaccttcaatactattttaaatggactttgtcgggagaagatgcttgccgatgcagaaaaactcttcaatgagatggtggaaaggggtgtctttccagatttttatactttcacaacacttattcatggttattgtaaaaacgggagtatggctaaatccttaagtttgttcgaggcaatgatttgtaaaaatatcaagcctgatattgtcacgtacaacacattgattgatggattctgcaaagtaggtgacatggataaagctaaggagctatggagtgacatggtttctagaagaatattccctaattacatttcatatggcattcttatcaatggattctgtagcatgggacttgtccatgaggcacttcatttgtgggaccagatgattgaagaaggtatcaaacccactctagtgacttgtaatactgtcataaagggctatagccgctctggtgacacagaaaaggcatatgagttcttaggcaaaatgatttcaaaaggaattggtcctgatagtattacttacaatactctgattaatggatatgtaaaagaagaaaacctggataaagcctttttttcagttaaggagatggaaaagcaaggactactgccagatgtgattacatacaatgtcattctatatgggttctgtagactgggtagactgcatgaagctgagttagttttgcgaaagatgatcgagaaaggtgtaaatcctgatagatccacttatacgtcattaataaatggacatgtgtcccaggacaatttgagagaggcattccactaccatgatgaaatgctgcagaggggatttgtaccagatgatgaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

592

Amino Acids

66.46

Weight (kDa)

5.91

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1386
AccI	GTMKAC	2 cut(s)	1594, 1603
AciI	CCGC	4 cut(s)	78, 282, 892, 1384
AclWI	GGATC	1 cut(s)	1659
AcsI	RAATTY	3 cut(s)	553, 678, 1772
AcuI	CTGAAG	2 cut(s)	693, 712
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	397, 1148, 1761
AflII	CTTAAG	1 cut(s)	1093
AflIII	ACRYGT	1 cut(s)	1693
AjnI	CCWGG	2 cut(s)	1500, 1701
AleI	CACNNNNGTG	1 cut(s)	1349
AluBI	AGCT	9 cut(s)	87, 128, 461, 508, 726, 810, 1196, 1204, 1616
AluI	AGCT	9 cut(s)	87, 128, 461, 508, 726, 810, 1196, 1204, 1616
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	1659
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	6 cut(s)	87, 200, 279, 589, 915, 1744
ApoI	RAATTY	3 cut(s)	553, 678, 1772
AseI	ATTAAT	2 cut(s)	1476, 1682
AspS9I	GGNCC	2 cut(s)	1315, 1445
AsuHPI	GGTGA	2 cut(s)	1193, 1403
AvaII	GGWCC	2 cut(s)	1315, 1445
BaeGI	GKGCMC	1 cut(s)	778
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	6 cut(s)	74, 187, 291, 576, 902, 1731
BccI	CCATC	4 cut(s)	332, 1000, 1157, 1525
BciT130I	CCWGG	2 cut(s)	1502, 1703
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	5 cut(s)	84, 129, 1224, 1349, 1777
BfmI	CTRYAG	6 cut(s)	67, 590, 1276, 1378, 1591, 1745
BfrI	CTTAAG	1 cut(s)	1093
BisI	GCNGC	8 cut(s)	79, 88, 201, 280, 590, 916, 1384, 1745
BlsI	GCNGC	8 cut(s)	80, 89, 202, 281, 591, 917, 1385, 1746
Bme1390I	CCNGG	2 cut(s)	1502, 1703
Bme18I	GGWCC	2 cut(s)	1315, 1445
BmgT120I	GGNCC	2 cut(s)	1315, 1445
BmiI	GGNNCC	1 cut(s)	1316
BmrFI	CCNGG	2 cut(s)	1502, 1703
BmrI	ACTGGG	1 cut(s)	1607
BmsI	GCATC	3 cut(s)	576, 963, 973
BmuI	ACTGGG	1 cut(s)	1607
BoxI	GACNNNNGTC	1 cut(s)	1696
BpiI	GAAGAC	1 cut(s)	203
Bpu10I	CCTNAGC	2 cut(s)	110, 1197
BpuEI	CTTGAG	1 cut(s)	926
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	1146
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	1701
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse1I	ACTGG	2 cut(s)	466, 1602
Bse3DI	GCAATG	1 cut(s)	1116
BseBI	CCWGG	2 cut(s)	1502, 1703
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	1701
BseGI	GGATG	2 cut(s)	901, 931
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	2 cut(s)	372, 1608
BseNI	ACTGG	2 cut(s)	466, 1602
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	6 cut(s)	74, 187, 291, 576, 902, 1731
BshFI	GGCC	1 cut(s)	502
BshVI	ATCGAT	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	3 cut(s)	1299, 1328, 1684
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	3 cut(s)	1299, 1328, 1684
BsmI	GAATGC	2 cut(s)	1257, 1721
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	828, 1638, 1664
BspACI	CCGC	4 cut(s)	78, 282, 892, 1384
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	2 cut(s)	373, 1609
BspDI	ATCGAT	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	1316
BspMAI	CTGCAG	2 cut(s)	594, 1749
BspPI	GGATC	1 cut(s)	1659
BspTI	CTTAAG	1 cut(s)	1093
BsrBI	CCGCTC	1 cut(s)	1386
BsrDI	GCAATG	1 cut(s)	1116
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	466, 1602
BssECI	CCNNGG	1 cut(s)	1701
BssMI	GATC	3 cut(s)	828, 1638, 1664
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	1502, 1703
Bst4CI	ACNGT	1 cut(s)	1366
Bst6I	CTCTTC	2 cut(s)	14, 1001
BstACI	GRCGYC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	1093
BstAUI	TGTACA	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	1146
BstC8I	GCNNGC	3 cut(s)	126, 808, 978
BstDEI	CTNAG	7 cut(s)	5, 110, 381, 489, 1197, 1417, 1617
BstF5I	GGATG	2 cut(s)	901, 931
BstKTI	GATC	3 cut(s)	831, 1641, 1667
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	3 cut(s)	828, 1638, 1664
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 84, 87, 161, 1383
BstNI	CCWGG	2 cut(s)	1502, 1703
BstNSI	RCATGY	1 cut(s)	1697
BstPAI	GACNNNNGTC	1 cut(s)	1696
BstSCI	CCNGG	2 cut(s)	1500, 1701
BstSFI	CTRYAG	6 cut(s)	67, 590, 1276, 1378, 1591, 1745
BstSLI	GKGCMC	1 cut(s)	778
BstV1I	GCAGC	6 cut(s)	74, 187, 291, 576, 902, 1731
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	1664
BstYI	RGATCY	1 cut(s)	1664
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	502
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	901, 931
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	3 cut(s)	126, 808, 978
CaiI	CAGNNNCTG	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	1315, 1445
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	396, 1147, 1760
CviQI	GTAC	3 cut(s)	396, 1147, 1760
DdeI	CTNAG	7 cut(s)	5, 110, 381, 489, 1197, 1417, 1617
DpnI	GATC	3 cut(s)	830, 1640, 1666
DpnII	GATC	3 cut(s)	828, 1638, 1664
DraI	TTTAAA	1 cut(s)	951
Eam1104I	CTCTTC	2 cut(s)	14, 1001
EarI	CTCTTC	2 cut(s)	14, 1001
Eco47I	GGWCC	2 cut(s)	1315, 1445
Eco57I	CTGAAG	2 cut(s)	693, 712
EcoRI	GAATTC	1 cut(s)	1772
EcoRII	CCWGG	2 cut(s)	1500, 1701
Esp3I	CGTCTC	1 cut(s)	34
FaqI	GGGAC	3 cut(s)	1299, 1328, 1684
FauI	CCCGC	2 cut(s)	275, 885
FauNDI	CATATG	2 cut(s)	1252, 1408
FblI	GTMKAC	2 cut(s)	1594, 1603
Fnu4HI	GCNGC	8 cut(s)	79, 88, 201, 280, 590, 916, 1384, 1745
FokI	GGATG	2 cut(s)	908, 938
Fsp4HI	GCNGC	8 cut(s)	79, 88, 201, 280, 590, 916, 1384, 1745
FspBI	CTAG	5 cut(s)	84, 129, 1224, 1349, 1777
GluI	GCNGC	8 cut(s)	79, 88, 201, 280, 590, 916, 1384, 1745
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	27
HindIII	AAGCTT	2 cut(s)	459, 808
HinfI	GANTC	3 cut(s)	50, 1167, 1272
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	1193, 1403
Hpy166II	GTNNAC	2 cut(s)	1595, 1604
Hpy188I	TCNGA	4 cut(s)	373, 667, 877, 1473
Hpy8I	GTNNAC	2 cut(s)	1595, 1604
HpyAV	CCTTC	6 cut(s)	137, 223, 379, 668, 946, 1325
HpyCH4III	ACNGT	1 cut(s)	1366
HpyCH4IV	ACGT	2 cut(s)	1145, 1676
HpyCH4V	TGCA	8 cut(s)	124, 560, 592, 806, 986, 1173, 1609, 1747
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 84, 87, 161, 1383
HpyF3I	CTNAG	7 cut(s)	5, 110, 381, 489, 1197, 1417, 1617
HpySE526I	ACGT	2 cut(s)	1145, 1676
Hsp92I	GRCGYC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	828, 1638, 1664
LmnI	GCTCC	3 cut(s)	171, 505, 1201
Lsp1109I	GCAGC	6 cut(s)	74, 187, 291, 576, 902, 1731
LweI	GCATC	3 cut(s)	576, 963, 973
MaeI	CTAG	5 cut(s)	84, 129, 1224, 1349, 1777
MaeII	ACGT	2 cut(s)	1145, 1676
MaeIII	GTNAC	6 cut(s)	406, 1141, 1181, 1211, 1351, 1391
MalI	GATC	3 cut(s)	830, 1640, 1666
MbiI	CCGCTC	1 cut(s)	1386
MboI	GATC	3 cut(s)	828, 1638, 1664
MboII	GAAGA	8 cut(s)	31, 203, 467, 982, 988, 1239, 1340, 1505
MflI	RGATCY	1 cut(s)	1664
MhlI	GDGCHC	1 cut(s)	778
MluCI	AATT	8 cut(s)	359, 553, 678, 738, 1240, 1440, 1708, 1772
MlyI	GAGTC	1 cut(s)	59
MslI	CAYNNNNRTG	2 cut(s)	1349, 1731
MspA1I	CMGCKG	1 cut(s)	282
MspCI	CTTAAG	1 cut(s)	1093
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	1502, 1703
Mva1269I	GAATGC	2 cut(s)	1257, 1721
MvaI	CCWGG	2 cut(s)	1502, 1703
MwoI	GCNNNNNNNGC	5 cut(s)	78, 84, 87, 161, 1383
NdeI	CATATG	2 cut(s)	1252, 1408
NdeII	GATC	3 cut(s)	828, 1638, 1664
NlaIV	GGNNCC	1 cut(s)	1316
NmuCI	GTSAC	6 cut(s)	406, 1141, 1181, 1211, 1351, 1391
NspI	RCATGY	1 cut(s)	1697
OliI	CACNNNNGTG	1 cut(s)	1349
PciI	ACATGT	1 cut(s)	1693
PctI	GAATGC	2 cut(s)	1257, 1721
PfeI	GAWTC	2 cut(s)	1167, 1272
PflFI	GACNNNGTC	1 cut(s)	960
PkrI	GCNGC	8 cut(s)	80, 89, 202, 281, 591, 917, 1385, 1746
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Ppu21I	YACGTR	1 cut(s)	1146
PscI	ACATGT	1 cut(s)	1693
PshAI	GACNNNNGTC	1 cut(s)	1696
PshBI	ATTAAT	2 cut(s)	1476, 1682
Psp6I	CCWGG	2 cut(s)	1500, 1701
PspGI	CCWGG	2 cut(s)	1500, 1701
PspN4I	GGNNCC	1 cut(s)	1316
PspPI	GGNCC	2 cut(s)	1315, 1445
PstI	CTGCAG	2 cut(s)	594, 1749
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	1664
PsyI	GACNNNGTC	1 cut(s)	960
RsaI	GTAC	3 cut(s)	397, 1148, 1761
RsaNI	GTAC	3 cut(s)	396, 1147, 1760
RseI	CAYNNNNRTG	2 cut(s)	1349, 1731
SatI	GCNGC	8 cut(s)	79, 88, 201, 280, 590, 916, 1384, 1745
Sau3AI	GATC	3 cut(s)	828, 1638, 1664
Sau96I	GGNCC	2 cut(s)	1315, 1445
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	1502, 1703
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	3 cut(s)	576, 963, 973
SfcI	CTRYAG	6 cut(s)	67, 590, 1276, 1378, 1591, 1745
SinI	GGWCC	2 cut(s)	1315, 1445
SmiMI	CAYNNNNRTG	2 cut(s)	1349, 1731
SmlI	CTYRAG	2 cut(s)	905, 1093
SmoI	CTYRAG	2 cut(s)	905, 1093
Sse9I	AATT	8 cut(s)	359, 553, 678, 738, 1240, 1440, 1708, 1772
SsiI	CCGC	4 cut(s)	78, 282, 892, 1384
SspI	AATATT	2 cut(s)	661, 1233
SspMI	CTAG	5 cut(s)	84, 129, 1224, 1349, 1777
StyD4I	CCNGG	2 cut(s)	1500, 1701
TaaI	ACNGT	1 cut(s)	1366
TaiI	ACGT	2 cut(s)	1148, 1679
TaqI	TCGA	6 cut(s)	150, 191, 348, 752, 1104, 1641
TasI	AATT	8 cut(s)	359, 553, 678, 738, 1240, 1440, 1708, 1772
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	2 cut(s)	81, 1386
TfiI	GAWTC	2 cut(s)	1167, 1272
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	6 cut(s)	406, 1141, 1181, 1211, 1351, 1391
TseI	GCWGC	6 cut(s)	87, 200, 279, 589, 915, 1744
Tsp45I	GTSAC	6 cut(s)	406, 1141, 1181, 1211, 1351, 1391
TspDTI	ATGAA	8 cut(s)	355, 812, 912, 1046, 1239, 1295, 1626, 1752
TspGWI	ACGGA	2 cut(s)	674, 864
TspRI	CASTG	1 cut(s)	636
Tth111I	GACNNNGTC	1 cut(s)	960
Vha464I	CTTAAG	1 cut(s)	1093
VpaK11BI	GGWCC	2 cut(s)	1315, 1445
VspI	ATTAAT	2 cut(s)	1476, 1682
XapI	RAATTY	3 cut(s)	553, 678, 1772
XbaI	TCTAGA	1 cut(s)	1223
XceI	RCATGY	1 cut(s)	1697
XmiI	GTMKAC	2 cut(s)	1594, 1603
XspI	CTAG	5 cut(s)	84, 129, 1224, 1349, 1777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.