Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

52769892 .. 52774477

Gene Structure 4586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2382 bp

ATGGGCACCCAAAGGCCAATTCTGCAAGTGAGAACCCTCACAACCTTCACAAGACACCCTGTGTTTCACTCTCAGAGAACCCATTCTATATCTTCTTGCCCATCAAACTGCTACTTGGAAAATGATGTTACACTTGTGCAGTCCAAGCGTACCAGCCAAGAACCATTTTTATCAGCTTCTCTGTCAGATTCTCTTTTGGTAGAGAAGCTTTTGTTGGGTTTGAAGCAAGGTAATCTCAATTATCTGCGTAACTCTCTGTTTCGGTTAAACCCACTTCTTGTTGTTGAACTTGTTTCCCGTTGCCGTGAAAATCTGCATCTGGGTCAGAAATTCGTCGACTTGATTATGTTAAATTGTCCGAATTTCAAGCACTCGTCACAGTCTTTGAGTGCAATGATTCACATTTTGGTCAGGGCCCGAAGGGTTTCAGATGCTCAAGCTTTAATGCTTAGAATGGTTAGGAAGAGTGGCGTCTCCCGTGTTGAAATAGTTGAGTCTTTGGTTTCAACCTGTAGCAGTTGCGGCTCTAGCTGCTTCGTTTTTGACTTGTTGCTTAGGACTTATGTGCAAGCTAGGAAGTTGAGAGAAGGGTTTGAGGCGTTTAAGGCACTTAGGAGCAAGGGAGTTGCTGTTTCGATAAATGCTGCTAATAGTCTTCTTGGTGGGCTTGTGAAGGTAGGGTGGGTAGATTTGGCATGGGAAGTGTATGGGGAAGTTGTTAGCAGCGGGGTTCAGTTAAATGTTTATACACTAAACATTATGGTTAATGCCTTGTGTAAAGATGGTAAAATCGATAGGGTTAAATTGTTCATATCGGACGTGGCTGAGAAGGGGGTTTGTACAGATATTGTGACATATAATACTCTAATCAATGCCTATTGTCGTGAAGGGCTTGTAGAAGAAGCTTTCCAGTTGAAAAGCTCTATGGCTTCTAAGGGTTTGAGGCCAGAGCTTTTCACATACAATGCTATCATAAATGGATTATGTAGGGTAGGAAATTATGCAAGGGCAAAGGAAGTTTTGTATGAGATGTTGCAGAATGGATTAAGTCCTGATACTACTACCTTTAATACACTGCTGGTTGAGAGTTGTAGAAAAGATAATATTTCAGAGGCTGAAGGAATTTTCCGTGAAATGTCATGTAGAGGTGTTGTTCCTGATTTAGTCAGCTTCAGTTCAATAATTGGGGTGCTTTCGAGGAATGGACATAGTGATCGTGCCCTATTATATTTTCAAGAAATGAAAACTGCAGGCTTGGTTCCAGATAATGTGATCTATACTATCCTTATAGACGGATATTGTAGAAATGGCAAGATGTCAAAGGCGTTGAAGTTGCGGGATGAAATGCTTCAGCAAGGCTGCGTGGTGGATGTTATTACCTTCAATACTATTTTAAATGGACTTTGTCGGGAGAAGATGCTTGCCGATGCAGAAAAACTCTTCAATGAGATGGTGGAAAGGGGTGTCTTTCCAGATTTTTATACTTTCACAACACTTATTCATGGTTATTGTAAAAACGGGAATATGGCTAAATCCTTAAATTTGTTCGAGGCAATGATTTGTAAAAATATCAAGCCTGATGTTGTCACATACAACACGTTGATTGATGGATTCTGCAAAGTAGGTGACATGGATAAAGCTAAGGAGCTATGGAGTGACATGGTTTCTAGAAGAATATTCCCTAATTACATTTCATATGGCATTCTTATCAATGGATTCTGTAGCATGGGGCTTGTCCATGAGGCACTTCATTTGTGGGACCAGATGATTGAAGAAGGTATCAAACCCACTCTAGTGACTTGTAATACTGTCATAAAGGGCTATAGCCGCTCTGGTGACACCGAAAAGGCATATGAGTTCTTAGGCAAAATGATTTCAAAAGGAATTGTTCCTGATAGTATTACTTACAATACTCTGATTAATGGATATGTAAAAGAAGAAAACCTGGATAAAGCCTTTTTTTCAGTTAAGGAGATGGAAAAGCAAGGACTACTGCCAGATGTGATTACATACAATGTCATTCTATATGGGTTCTGTAGACAGGGTAGACTGCATGAAGCTGAGTTAGTTTTGCGAAAGATGATTGAGAAAGGTGTAAATCCTGATAGATCCACTTATACGTCATTAATAAATGGACATGTGTCCCAGGACAATTTGAGAGAGGCATTCCGCTACCATGATGAAATGCTGCAGAGGGGATTTGTACCAGATGATGAATTCTACTATGCTACTATAATGTTGTTACTATACAGACCTTGTTTCCTGTTAACTTGTAATGAAGGGTTCACTGGATATAGAGAGAATATACTCACTATGATAGCTACGATCGTGAATTCAGGATACTTGATCTTCATCAGCTTATCACTAGGTCTGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

794

Amino Acids

89.33

Weight (kDa)

8.27

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	215 - 260	8.2e-10	PPR repeat family
PPR_long	PF17177	231 - 363	2.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	272 - 326	4.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	277 - 309	8.5e-13	PPR repeat
TPR_24	PF23276	278 - 378	4.7e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	282 - 330	4.1e-18	PPR repeat family
PPR	PF01535	284 - 314	1.3e-08	PPR repeat
PPR_3	PF13812	305 - 360	7.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	312 - 344	2.9e-09	PPR repeat
PPR_2	PF13041	317 - 364	5.6e-12	PPR repeat family
PPR	PF01535	319 - 349	7.3e-07	PPR repeat
PPR_1	PF12854	347 - 380	2.4e-06	PPR repeat
PPR_2	PF13041	351 - 398	2.1e-09	PPR repeat family
PPR_2	PF13041	386 - 429	2e-06	PPR repeat family
TPR_24	PF23276	394 - 518	2.6e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	411 - 466	3.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	418 - 449	8.8e-13	PPR repeat
PPR_2	PF13041	421 - 470	4e-18	PPR repeat family
PPR	PF01535	424 - 454	1.3e-09	PPR repeat
PPR_long	PF17177	435 - 569	8.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	453 - 485	2e-12	PPR repeat
PPR_2	PF13041	457 - 505	1.4e-19	PPR repeat family
PPR	PF01535	459 - 489	7e-08	PPR repeat
PPR_long	PF17177	469 - 626	5.8e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	487 - 519	2.9e-11	PPR repeat
PPR	PF01535	494 - 524	3.6e-07	PPR repeat
PPR_2	PF13041	495 - 540	6.7e-17	PPR repeat family
PPR_3	PF13812	515 - 573	2.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	522 - 555	2.8e-15	PPR repeat
PPR_2	PF13041	526 - 574	2e-19	PPR repeat family
PPR	PF01535	529 - 559	1.3e-09	PPR repeat
PPR_1	PF12854	559 - 589	2.9e-09	PPR repeat
PPR_2	PF13041	561 - 600	1.3e-08	PPR repeat family
PPR	PF01535	564 - 594	2.7e-07	PPR repeat
PPR_long	PF17177	579 - 714	5.7e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	585 - 645	3.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	593 - 624	2.8e-06	PPR repeat
PPR_2	PF13041	596 - 645	6.4e-16	PPR repeat family
PPR	PF01535	599 - 629	1e-07	PPR repeat
PPR_1	PF12854	627 - 660	9.2e-09	PPR repeat
PPR_2	PF13041	631 - 680	2.9e-16	PPR repeat family
PPR	PF01535	634 - 664	5.2e-06	PPR repeat
PPR_3	PF13812	656 - 711	2.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	663 - 694	7.9e-12	PPR repeat
PPR_2	PF13041	666 - 713	6.6e-15	PPR repeat family
PPR	PF01535	669 - 699	5.2e-07	PPR repeat
PPR	PF01535	704 - 734	6.3e-06	PPR repeat
PPR_2	PF13041	705 - 738	4.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	1830
AccI	GTMKAC	3 cut(s)	336, 2038, 2047
AciI	CCGC	5 cut(s)	522, 726, 1336, 1828, 2170
AclWI	GGATC	1 cut(s)	2103
AcsI	RAATTY	6 cut(s)	329, 361, 1122, 1540, 2216, 2332
AcuI	CTGAAG	3 cut(s)	1137, 1156, 1334
AcyI	GRCGYC	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	61
AfaI	GTAC	3 cut(s)	151, 841, 2205
AflIII	ACRYGT	2 cut(s)	1596, 2137
AjiI	CACGTC	1 cut(s)	820
AjnI	CCWGG	2 cut(s)	1944, 2145
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 197, 229
AleI	CACNNNNGTG	1 cut(s)	1793
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	2103
AlwNI	CAGNNNCTG	1 cut(s)	1115
AoxI	GGCC	3 cut(s)	14, 414, 944
ApaI	GGGCCC	1 cut(s)	418
ApeKI	GCWGC	5 cut(s)	531, 644, 723, 1359, 2188
ApoI	RAATTY	6 cut(s)	329, 361, 1122, 1540, 2216, 2332
AseI	ATTAAT	2 cut(s)	1920, 2126
Asp700I	GAANNNNTTC	3 cut(s)	82, 424, 1347
AspS9I	GGNCC	3 cut(s)	414, 415, 1759
AsuHPI	GGTGA	2 cut(s)	1637, 1847
AvaII	GGWCC	1 cut(s)	1759
BaeGI	GKGCMC	3 cut(s)	8, 418, 1222
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	647
BbvI	GCAGC	5 cut(s)	518, 631, 735, 1346, 2175
BccI	CCATC	5 cut(s)	109, 776, 1444, 1601, 1969
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	1946, 2147
BciVI	GTATCC	1 cut(s)	2333
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	5 cut(s)	528, 573, 1668, 1793, 2366
BfmI	CTRYAG	6 cut(s)	511, 1248, 1720, 1822, 2035, 2189
BfuI	GTATCC	1 cut(s)	2333
BisI	GCNGC	7 cut(s)	523, 532, 645, 724, 1360, 1828, 2189
BlsI	GCNGC	7 cut(s)	524, 533, 646, 725, 1361, 1829, 2190
Bme1390I	CCNGG	2 cut(s)	1946, 2147
Bme18I	GGWCC	1 cut(s)	1759
BmgBI	CACGTC	1 cut(s)	820
BmgT120I	GGNCC	3 cut(s)	414, 415, 1759
BmiI	GGNNCC	4 cut(s)	7, 416, 1260, 1760
BmrFI	CCNGG	2 cut(s)	1946, 2147
BmsI	GCATC	4 cut(s)	325, 421, 1407, 1417
BoxI	GACNNNNGTC	1 cut(s)	2140
BpiI	GAAGAC	1 cut(s)	647
Bpu10I	CCTNAGC	2 cut(s)	554, 1641
BpuEI	CTTGAG	1 cut(s)	420
Bsa29I	ATCGAT	1 cut(s)	792
BsaBI	GATNNNNATC	1 cut(s)	2351
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	2145
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bse1I	ACTGG	2 cut(s)	910, 2293
Bse3DI	GCAATG	2 cut(s)	399, 1560
Bse8I	GATNNNNATC	1 cut(s)	2351
BseBI	CCWGG	2 cut(s)	1946, 2147
BseCI	ATCGAT	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	2145
BseGI	GGATG	2 cut(s)	1345, 1375
BseJI	GATNNNNATC	1 cut(s)	2351
BseMI	GCAATG	2 cut(s)	399, 1560
BseMII	CTCAG	3 cut(s)	86, 816, 2052
BseNI	ACTGG	2 cut(s)	910, 2293
BseSI	GKGCMC	3 cut(s)	8, 418, 1222
BseXI	GCAGC	5 cut(s)	518, 631, 735, 1346, 2175
BsgI	GTGCAG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	2328
BshFI	GGCC	3 cut(s)	16, 416, 946
BshNI	GGYRCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	792
BsiEI	CGRYCG	1 cut(s)	2328
BslFI	GGGAC	2 cut(s)	1772, 2128
BsmAI	GTCTC	1 cut(s)	478
BsmBI	CGTCTC	1 cut(s)	478
BsmFI	GGGAC	2 cut(s)	1772, 2128
BsmI	GAATGC	2 cut(s)	1701, 2165
BsnI	GGCC	3 cut(s)	16, 416, 946
Bsp120I	GGGCCC	1 cut(s)	414
Bsp1286I	GDGCHC	3 cut(s)	8, 418, 1222
Bsp1407I	TGTACA	1 cut(s)	839
Bsp143I	GATC	5 cut(s)	1213, 1272, 2108, 2325, 2346
BspACI	CCGC	5 cut(s)	522, 726, 1336, 1828, 2170
BspANI	GGCC	3 cut(s)	16, 416, 946
BspCNI	CTCAG	3 cut(s)	85, 817, 2053
BspDI	ATCGAT	1 cut(s)	792
BspLI	GGNNCC	4 cut(s)	7, 416, 1260, 1760
BspMAI	CTGCAG	2 cut(s)	1252, 2193
BspPI	GGATC	1 cut(s)	2103
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	1830
BsrDI	GCAATG	2 cut(s)	399, 1560
BsrGI	TGTACA	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	910, 2293
BssECI	CCNNGG	1 cut(s)	2145
BssMI	GATC	5 cut(s)	1213, 1272, 2108, 2325, 2346
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	1946, 2147
Bst4CI	ACNGT	2 cut(s)	381, 1810
Bst6I	CTCTTC	2 cut(s)	458, 1445
BstACI	GRCGYC	1 cut(s)	471
BstAUI	TGTACA	1 cut(s)	839
BstC8I	GCNNGC	3 cut(s)	570, 1252, 1422
BstDEI	CTNAG	9 cut(s)	72, 449, 554, 611, 825, 933, 1641, 1861, 2061
BstF5I	GGATG	2 cut(s)	1345, 1375
BstKTI	GATC	5 cut(s)	1216, 1275, 2111, 2328, 2349
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	5 cut(s)	1213, 1272, 2108, 2325, 2346
BstMCI	CGRYCG	1 cut(s)	2328
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 145, 522, 528, 531, 605, 1827
BstNI	CCWGG	2 cut(s)	1946, 2147
BstNSI	RCATGY	1 cut(s)	2141
BstPAI	GACNNNNGTC	1 cut(s)	2140
BstSCI	CCNGG	2 cut(s)	1944, 2145
BstSFI	CTRYAG	6 cut(s)	511, 1248, 1720, 1822, 2035, 2189
BstSLI	GKGCMC	3 cut(s)	8, 418, 1222
BstV1I	GCAGC	5 cut(s)	518, 631, 735, 1346, 2175
BstV2I	GAAGAC	1 cut(s)	647
BstX2I	RGATCY	1 cut(s)	2108
BstYI	RGATCY	1 cut(s)	2108
Bsu15I	ATCGAT	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	2333
BsuRI	GGCC	3 cut(s)	16, 416, 946
BsuTUI	ATCGAT	1 cut(s)	792
BtrI	CACGTC	1 cut(s)	820
BtsCI	GGATG	2 cut(s)	1345, 1375
BtsI	GCAGTG	1 cut(s)	1073
BtsIMutI	CAGTG	2 cut(s)	1073, 2286
Cac8I	GCNNGC	3 cut(s)	570, 1252, 1422
CaiI	CAGNNNCTG	1 cut(s)	1115
Cfr13I	GGNCC	3 cut(s)	414, 415, 1759
ClaI	ATCGAT	1 cut(s)	792
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	150, 840, 2204
CviQI	GTAC	3 cut(s)	150, 840, 2204
DdeI	CTNAG	9 cut(s)	72, 449, 554, 611, 825, 933, 1641, 1861, 2061
DpnI	GATC	5 cut(s)	1215, 1274, 2110, 2327, 2348
DpnII	GATC	5 cut(s)	1213, 1272, 2108, 2325, 2346
DraI	TTTAAA	1 cut(s)	1395
DraIII	CACNNNGTG	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	458, 1445
EarI	CTCTTC	2 cut(s)	458, 1445
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	1759
Eco57I	CTGAAG	3 cut(s)	1137, 1156, 1334
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRI	GAATTC	2 cut(s)	2216, 2332
EcoRII	CCWGG	2 cut(s)	1944, 2145
EcoT38I	GRGCYC	1 cut(s)	418
Esp3I	CGTCTC	1 cut(s)	478
FaqI	GGGAC	2 cut(s)	1772, 2128
FauI	CCCGC	2 cut(s)	719, 1329
FauNDI	CATATG	2 cut(s)	1696, 1852
FblI	GTMKAC	3 cut(s)	336, 2038, 2047
Fnu4HI	GCNGC	7 cut(s)	523, 532, 645, 724, 1360, 1828, 2189
FokI	GGATG	2 cut(s)	1352, 1382
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	7 cut(s)	523, 532, 645, 724, 1360, 1828, 2189
FspBI	CTAG	5 cut(s)	528, 573, 1668, 1793, 2366
GluI	GCNGC	7 cut(s)	523, 532, 645, 724, 1360, 1828, 2189
HaeIII	GGCC	3 cut(s)	16, 416, 946
HgaI	GACGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	471
HincII	GTYRAC	2 cut(s)	337, 2268
HindII	GTYRAC	2 cut(s)	337, 2268
HindIII	AAGCTT	3 cut(s)	206, 438, 903
HinfI	GANTC	5 cut(s)	188, 397, 494, 1611, 1716
HpaI	GTTAAC	1 cut(s)	2268
HphI	GGTGA	2 cut(s)	1637, 1847
Hpy166II	GTNNAC	5 cut(s)	337, 2039, 2048, 2268, 2286
Hpy188I	TCNGA	9 cut(s)	75, 187, 327, 360, 430, 817, 1111, 1917, 2373
Hpy8I	GTNNAC	5 cut(s)	337, 2039, 2048, 2268, 2286
Hpy99I	CGWCG	1 cut(s)	338
HpyCH4III	ACNGT	2 cut(s)	381, 1810
HpyCH4IV	ACGT	3 cut(s)	819, 1598, 2120
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 145, 522, 528, 531, 605, 1827
HpyF3I	CTNAG	9 cut(s)	72, 449, 554, 611, 825, 933, 1641, 1861, 2061
HpySE526I	ACGT	3 cut(s)	819, 1598, 2120
Hsp92I	GRCGYC	1 cut(s)	471
KspAI	GTTAAC	1 cut(s)	2268
Kzo9I	GATC	5 cut(s)	1213, 1272, 2108, 2325, 2346
LmnI	GCTCC	2 cut(s)	615, 1645
Lsp1109I	GCAGC	5 cut(s)	518, 631, 735, 1346, 2175
LweI	GCATC	4 cut(s)	325, 421, 1407, 1417
MaeI	CTAG	5 cut(s)	528, 573, 1668, 1793, 2366
MaeII	ACGT	3 cut(s)	819, 1598, 2120
MalI	GATC	5 cut(s)	1215, 1274, 2110, 2327, 2348
MbiI	CCGCTC	1 cut(s)	1830
MboI	GATC	5 cut(s)	1213, 1272, 2108, 2325, 2346
MflI	RGATCY	1 cut(s)	2108
MhlI	GDGCHC	3 cut(s)	8, 418, 1222
MlyI	GAGTC	1 cut(s)	503
MroXI	GAANNNNTTC	3 cut(s)	82, 424, 1347
MslI	CAYNNNNRTG	1 cut(s)	1793
MspA1I	CMGCKG	1 cut(s)	726
MspR9I	CCNGG	2 cut(s)	1946, 2147
Mva1269I	GAATGC	2 cut(s)	1701, 2165
MvaI	CCWGG	2 cut(s)	1946, 2147
MwoI	GCNNNNNNNGC	7 cut(s)	22, 145, 522, 528, 531, 605, 1827
NdeI	CATATG	2 cut(s)	1696, 1852
NdeII	GATC	5 cut(s)	1213, 1272, 2108, 2325, 2346
NlaIV	GGNNCC	4 cut(s)	7, 416, 1260, 1760
NmuCI	GTSAC	7 cut(s)	375, 850, 1585, 1625, 1655, 1795, 1835
NspI	RCATGY	1 cut(s)	2141
OliI	CACNNNNGTG	1 cut(s)	1793
PciI	ACATGT	1 cut(s)	2137
PctI	GAATGC	2 cut(s)	1701, 2165
PdmI	GAANNNNTTC	3 cut(s)	82, 424, 1347
PfeI	GAWTC	4 cut(s)	188, 397, 1611, 1716
PflFI	GACNNNGTC	1 cut(s)	1404
PkrI	GCNGC	7 cut(s)	524, 533, 646, 725, 1361, 1829, 2190
Ple19I	CGATCG	1 cut(s)	2328
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PscI	ACATGT	1 cut(s)	2137
PshAI	GACNNNNGTC	1 cut(s)	2140
PshBI	ATTAAT	2 cut(s)	1920, 2126
Psp6I	CCWGG	2 cut(s)	1944, 2145
PspGI	CCWGG	2 cut(s)	1944, 2145
PspN4I	GGNNCC	4 cut(s)	7, 416, 1260, 1760
PspOMI	GGGCCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	414, 415, 1759
PstI	CTGCAG	2 cut(s)	1252, 2193
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	1 cut(s)	2108
PsyI	GACNNNGTC	1 cut(s)	1404
PvuI	CGATCG	1 cut(s)	2328
RsaI	GTAC	3 cut(s)	151, 841, 2205
RsaNI	GTAC	3 cut(s)	150, 840, 2204
RseI	CAYNNNNRTG	1 cut(s)	1793
SalI	GTCGAC	1 cut(s)	335
SatI	GCNGC	7 cut(s)	523, 532, 645, 724, 1360, 1828, 2189
Sau3AI	GATC	5 cut(s)	1213, 1272, 2108, 2325, 2346
Sau96I	GGNCC	3 cut(s)	414, 415, 1759
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	1946, 2147
SduI	GDGCHC	3 cut(s)	8, 418, 1222
SfaNI	GCATC	4 cut(s)	325, 421, 1407, 1417
SfcI	CTRYAG	6 cut(s)	511, 1248, 1720, 1822, 2035, 2189
SinI	GGWCC	1 cut(s)	1759
SmiMI	CAYNNNNRTG	1 cut(s)	1793
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SsiI	CCGC	5 cut(s)	522, 726, 1336, 1828, 2170
SspI	AATATT	2 cut(s)	1105, 1677
SspMI	CTAG	5 cut(s)	528, 573, 1668, 1793, 2366
StyD4I	CCNGG	2 cut(s)	1944, 2145
TaaI	ACNGT	2 cut(s)	381, 1810
TaiI	ACGT	3 cut(s)	822, 1601, 2123
TaqI	TCGA	5 cut(s)	336, 635, 792, 1196, 1548
TatI	WGTACW	1 cut(s)	839
TauI	GCSGC	2 cut(s)	525, 1830
TfiI	GAWTC	4 cut(s)	188, 397, 1611, 1716
TscAI	CASTG	2 cut(s)	1080, 2293
TseFI	GTSAC	7 cut(s)	375, 850, 1585, 1625, 1655, 1795, 1835
TseI	GCWGC	5 cut(s)	531, 644, 723, 1359, 2188
Tsp45I	GTSAC	7 cut(s)	375, 850, 1585, 1625, 1655, 1795, 1835
TspGWI	ACGGA	2 cut(s)	1118, 1308
TspRI	CASTG	2 cut(s)	1080, 2293
Tth111I	GACNNNGTC	1 cut(s)	1404
VpaK11BI	GGWCC	1 cut(s)	1759
VspI	ATTAAT	2 cut(s)	1920, 2126
XapI	RAATTY	6 cut(s)	329, 361, 1122, 1540, 2216, 2332
XbaI	TCTAGA	1 cut(s)	1667
XceI	RCATGY	1 cut(s)	2141
XmiI	GTMKAC	3 cut(s)	336, 2038, 2047
XmnI	GAANNNNTTC	3 cut(s)	82, 424, 1347
XspI	CTAG	5 cut(s)	528, 573, 1668, 1793, 2366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.