Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009011

Physical Location & Seq

Genomic Coordinates Reverse (-)

52791920 .. 52793812

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATTCACATTTTGGTCAGGGCCCGAAGGGTTTCAGATGCTCAAGCTTTAATGCTTAGAATGGTTAGGAATAGTGGTGTCTCCCGTGTTGAAATAGTTGAGTCTTTGGTTTTAACCTGTAGCACTTGCGGCTCTAGCTGCTTCATTTTTGACTTGTTGCTTAGGACTTATGTGCAAGTTAGGAAGTTGAGAGAAGGGTTCGAGGCATTTAAGGCACTTAGGAGCAAGGGAGTTGCTGTTTCGATAAATGCAACTAATAGTCTTCTTGGTGAGCTTGTGAAGGTAGGGTGGGTAGATTTGGCATGGGAAGTGTATGGGGAAGTTGTTTGCAGCGGGGTTCAGTTAAATGTTTATACACTAAACATTATGGTTAATGCCTTGTGTAAAGATGGTAAAATTGATAGGGTTAAATTGTTCATATCAGACATGGCTGAGAAGAGGGTTTGTACAGATATTGTGACATATAATACTCTAATCAATGCCTATTGTCGTGAAGGGCTAATAGAAGAAGCTTTCCAGTTGAAAAACTATATGGCTTCTAAGGGCACTCTTAGGGCTGGCTTGAAATACCGGACCTGTAGAAACCAGCAGGAATCCGGCCGAACCGCCACTGTTGGTGCTGACAAAAATGGTAGCCGAAGCCGTTGGATCTTAGTGGAGATTGGGATACCTTTCCACAATCCAGACACTCCTCCAACACCTGAGTTTGAAGCTGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

241

Amino Acids

26.72

Weight (kDa)

9.03

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	84 - 129	1.2e-09	PPR repeat family
PPR_3	PF13812	106 - 162	6.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	112 - 135	3e-06	PPR repeat
PPR_1	PF12854	148 - 178	1.2e-12	PPR repeat
PPR_2	PF13041	151 - 182	7.5e-11	PPR repeat family
PPR	PF01535	153 - 182	8.6e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01110 AT5G01110
fragaria_vesca	FvH4_3g27950 FvH4_3g27950
malus_domestica	MD02G1234700.v1.1 MD02G1235100.v1.1 MD07G1079700.v1.1
prunus_persica	Prupe.2G102900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0050671
rosa_laevigata	RLG00000034717 RLG00000034720
rosa_multiflora	Rmu_ssc0000350.1_g000039
rosa_roxburghii	Rroxscaffold_1G00030130
rosa_rugosa	Rorug05G0262900 Rorug05G0263000 Rorug05G0263000 Rorug05G0263000
rosa_samantha	Rh5AG334900 Rh5BG344200 Rh5CG372100 Rh5DG357300
rosa_wichuraiana	Rw5G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	129, 333, 606
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	598
AfaI	GTAC	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	92, 523, 565, 710
AluBI	AGCT	5 cut(s)	47, 138, 274, 512, 713
AluI	AGCT	5 cut(s)	47, 138, 274, 512, 713
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	2 cut(s)	21, 598
ApaI	GGGCCC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	138, 330
Asp700I	GAANNNNTTC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	21, 22, 573
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	573
BaeGI	GKGCMC	2 cut(s)	25, 548
BanII	GRGCYC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	125, 342
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	627
BciVI	GTATCC	1 cut(s)	660
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	2 cut(s)	118, 577
BfuI	GTATCC	1 cut(s)	660
BisI	GCNGC	3 cut(s)	130, 139, 331
BlsI	GCNGC	3 cut(s)	131, 140, 332
Bme18I	GGWCC	1 cut(s)	573
BmgT120I	GGNCC	3 cut(s)	21, 22, 573
BmiI	GGNNCC	1 cut(s)	23
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	570
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse1I	ACTGG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	423, 693
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	681
BseSI	GKGCMC	2 cut(s)	25, 548
BseX3I	CGGCCG	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	125, 342
Bsh1285I	CGRYCG	1 cut(s)	601
BshFI	GGCC	2 cut(s)	23, 600
BsiEI	CGRYCG	1 cut(s)	601
BsiSI	CCGG	2 cut(s)	571, 597
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	23, 600
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	25, 548
Bsp1407I	TGTACA	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	648
BspACI	CCGC	3 cut(s)	129, 333, 606
BspANI	GGCC	2 cut(s)	23, 600
BspCNI	CTCAG	2 cut(s)	424, 694
BspLI	GGNNCC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	656
BsrGI	TGTACA	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	517
BssMI	GATC	1 cut(s)	648
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	431
BstAUI	TGTACA	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	8 cut(s)	56, 161, 218, 432, 540, 551, 652, 702
BstKTI	GATC	1 cut(s)	651
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	648
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 135, 138, 212
BstSFI	CTRYAG	2 cut(s)	118, 577
BstSLI	GKGCMC	2 cut(s)	25, 548
BstV1I	GCAGC	2 cut(s)	125, 342
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BstZI	CGGCCG	1 cut(s)	598
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	23, 600
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	559
Cfr13I	GGNCC	3 cut(s)	21, 22, 573
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	3 cut(s)	303, 427, 720
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	8 cut(s)	56, 161, 218, 432, 540, 551, 652, 702
DpnI	GATC	1 cut(s)	650
DpnII	GATC	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	598
EagI	CGGCCG	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EclXI	CGGCCG	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	573
Eco52I	CGGCCG	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	3 cut(s)	306, 430, 723
FatI	CATG	3 cut(s)	302, 426, 719
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	130, 139, 331
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	130, 139, 331
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	3 cut(s)	130, 139, 331
HaeIII	GGCC	2 cut(s)	23, 600
HapII	CCGG	2 cut(s)	571, 597
Hin1II	CATG	3 cut(s)	306, 430, 723
HindIII	AAGCTT	2 cut(s)	45, 510
HinfI	GANTC	3 cut(s)	4, 101, 593
HpaII	CCGG	2 cut(s)	571, 597
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	37, 424
Hpy188III	TCNNGA	2 cut(s)	491, 683
HpyAV	CCTTC	4 cut(s)	21, 188, 274, 488
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4V	TGCA	3 cut(s)	175, 251, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 135, 138, 212
HpyF3I	CTNAG	8 cut(s)	56, 161, 218, 432, 540, 551, 652, 702
Hsp92II	CATG	3 cut(s)	306, 430, 723
Kzo9I	GATC	1 cut(s)	648
LmnI	GCTCC	2 cut(s)	222, 716
Lsp1109I	GCAGC	2 cut(s)	125, 342
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	1 cut(s)	650
MboI	GATC	1 cut(s)	648
MboII	GAAGA	3 cut(s)	254, 448, 518
MflI	RGATCY	1 cut(s)	648
MhlI	GDGCHC	2 cut(s)	25, 548
MluCI	AATT	2 cut(s)	396, 410
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	626, 719
MnlI	CCTC	3 cut(s)	196, 432, 702
MroXI	GAANNNNTTC	1 cut(s)	31
MseI	TTAA	6 cut(s)	50, 113, 210, 344, 372, 408
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	2 cut(s)	571, 597
MwoI	GCNNNNNNNGC	4 cut(s)	129, 135, 138, 212
NdeII	GATC	1 cut(s)	648
NlaIII	CATG	3 cut(s)	306, 430, 723
NlaIV	GGNNCC	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	4, 593
PkrI	GCNGC	3 cut(s)	131, 140, 332
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	23
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	21, 22, 573
PsuI	RGATCY	1 cut(s)	648
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SaqAI	TTAA	6 cut(s)	50, 113, 210, 344, 372, 408
SatI	GCNGC	3 cut(s)	130, 139, 331
Sau3AI	GATC	1 cut(s)	648
Sau96I	GGNCC	3 cut(s)	21, 22, 573
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	25, 548
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	118, 577
SinI	GGWCC	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	2 cut(s)	396, 410
SsiI	CCGC	3 cut(s)	129, 333, 606
SspMI	CTAG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	613
TaqI	TCGA	2 cut(s)	201, 242
TasI	AATT	2 cut(s)	396, 410
TatI	WGTACW	1 cut(s)	446
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	4, 593
Tru1I	TTAA	6 cut(s)	50, 113, 210, 344, 372, 408
Tru9I	TTAA	6 cut(s)	50, 113, 210, 344, 372, 408
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	138, 330
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	133, 406
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	31
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.