FvH4_3g28820

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011351
Physical Location & Seq
Reverse (-)
21800669 .. 21803750
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28820.t1

Sequence Viewer

Length: 873 bp
ATGAAGAGACACCTGTCAAAAGCCTGTCAAAGTACAAATTTTAGTATACAGAAAAGACTGTTGATCCAGGACTGTATGCTACATCCAAAGAAATGTGATGGCCGTGAAATGGGAGCAAAACGTCAGCGGCTTGACCACCGCATTGACCACCGAATTGACCACCGGCTTGACCAGGGATCTTCATTCTATGCAAGTTCCCCTGGTTCAAGTTATATGTTCAATCCAACTCCCTCTGCATTTGTGGGACAACCTCCGCCTTTTCCTGTTGTCAAACTTCGTGGTCTACCATTTGATTGCACGGAAGCGGATGTTGCTGAGTTCTTCAATGGTCTTGACATTGTTGATATTCTCTTTGTTCACAAGAATAGCAAGGTCACAGGGGAAGCTTATTGTGTTCTGGGATATCCCCTTCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAGAACATGGGCAGGAGATATGTTGAGGTGTTCAGAAGTAAGAGGCAGGAATATTACAAGGCAATAGCAAATGAAGTTGCCGATTCTCGTGGTTCTCCTCCTCGCAGAAATGCCCCAAGGGCTAAATCTTATGATGAAGGGAAGGACTCAGCAGAACATACAGGGGTATTGCGGTTGAGGGGGTTACCATTTTCAGCTGGCAAGGATGATATAATAGATTTTTTCAAGGATTTTGTGTTGTCAGAGGACTCGATTCATTTCACAATGAATTCGGAAGGGAGGCCAACTGGGGAAGCATTTGTGGAGTTTGCAAGTGCAGAAGATTCCAAAGCTGCCATGGCTAAGGATAGGATGACTCTTGGAAGTCGATATATAGAGCTGTTTCCCTCATCACATGAGGAGTTGGATGAAGCAATTTCAAAAGGACGATGA

Protein Analysis

291

Amino Acids

32.84

Weight (kDa)

8.51

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 205 - 272 2.5e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 46, 283
AciI CCGC 5 cut(s) 127, 139, 254, 305, 613
AclWI GGATC 2 cut(s) 58, 184
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 2 cut(s) 37, 709
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 109, 432
AgsI TTSAA 6 cut(s) 207, 220, 325, 431, 667, 861
AjnI CCWGG 3 cut(s) 66, 171, 199
AluBI AGCT 4 cut(s) 386, 638, 773, 820
AluI AGCT 4 cut(s) 386, 638, 773, 820
AlwI GGATC 2 cut(s) 58, 184
AoxI GGCC 2 cut(s) 100, 722
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 2 cut(s) 37, 709
BauI CACGAG 1 cut(s) 528
BbvI GCAGC 1 cut(s) 760
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 87
BciT130I CCWGG 3 cut(s) 68, 173, 201
BglI GCCNNNNNGGC 1 cut(s) 560
BisI GCNGC 2 cut(s) 128, 774
BlsI GCNGC 2 cut(s) 129, 775
Bme1390I CCNGG 3 cut(s) 68, 173, 201
BmrFI CCNGG 3 cut(s) 68, 173, 201
BmrI ACTGGG 1 cut(s) 738
BmuI ACTGGG 1 cut(s) 738
BoxI GACNNNNGTC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 783
BsaJI CCNNGG 4 cut(s) 172, 199, 557, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 432
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 733
BseBI CCWGG 3 cut(s) 68, 173, 201
BseDI CCNNGG 4 cut(s) 172, 199, 557, 777
BseGI GGATG 5 cut(s) 82, 313, 652, 798, 853
BseLI CCNNNNNNNGG 2 cut(s) 109, 432
BseMII CTCAG 2 cut(s) 306, 603
BseNI ACTGG 1 cut(s) 733
BseRI GAGGAG 3 cut(s) 528, 531, 854
BseXI GCAGC 1 cut(s) 760
BsgI GTGCAG 1 cut(s) 777
BshFI GGCC 2 cut(s) 102, 724
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 109, 432
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 2 cut(s) 102, 724
Bsp143I GATC 2 cut(s) 63, 176
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 5 cut(s) 127, 139, 254, 305, 613
BspANI GGCC 2 cut(s) 102, 724
BspCNI CTCAG 2 cut(s) 307, 602
BspPI GGATC 2 cut(s) 58, 184
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 1 cut(s) 733
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 4 cut(s) 172, 199, 557, 777
BssMI GATC 2 cut(s) 63, 176
BssNAI GTATAC 1 cut(s) 47
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 2 cut(s) 557, 777
Bst1107I GTATAC 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 3 cut(s) 68, 173, 201
Bst4CI ACNGT 2 cut(s) 60, 74
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 3 cut(s) 315, 589, 783
BstDSI CCRYGG 1 cut(s) 777
BstEII GGTNACC 1 cut(s) 624
BstF5I GGATG 5 cut(s) 82, 313, 652, 798, 853
BstKTI GATC 2 cut(s) 66, 179
BstMBI GATC 2 cut(s) 63, 176
BstMWI GCNNNNNNNGC 3 cut(s) 311, 560, 779
BstNI CCWGG 3 cut(s) 68, 173, 201
BstPAI GACNNNNGTC 1 cut(s) 13
BstPI GGTNACC 1 cut(s) 624
BstSCI CCNGG 3 cut(s) 66, 171, 199
BstV1I GCAGC 1 cut(s) 760
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BstZ17I GTATAC 1 cut(s) 47
BsuRI GGCC 2 cut(s) 102, 724
BtgI CCRYGG 1 cut(s) 777
BtsCI GGATG 5 cut(s) 82, 313, 652, 798, 853
Cac8I GCNNGC 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 162
Csp6I GTAC 1 cut(s) 33
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 3 cut(s) 448, 778, 836
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 3 cut(s) 315, 589, 783
DpnI GATC 2 cut(s) 65, 178
DpnII GATC 2 cut(s) 63, 176
EaeI YGGCCR 1 cut(s) 100
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 557, 777
Eco32I GATATC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 395
Eco91I GGTNACC 1 cut(s) 624
EcoO65I GGTNACC 1 cut(s) 624
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 3 cut(s) 66, 171, 199
EcoRV GATATC 1 cut(s) 404
EcoT14I CCWWGG 2 cut(s) 557, 777
ErhI CCWWGG 2 cut(s) 557, 777
FaeI CATG 3 cut(s) 451, 781, 839
FaqI GGGAC 1 cut(s) 258
FatI CATG 3 cut(s) 447, 777, 835
FblI GTMKAC 2 cut(s) 46, 283
Fnu4HI GCNGC 2 cut(s) 128, 774
FokI GGATG 5 cut(s) 69, 320, 659, 805, 860
Fsp4HI GCNGC 2 cut(s) 128, 774
GluI GCNGC 2 cut(s) 128, 774
HaeIII GGCC 2 cut(s) 102, 724
HapII CCGG 1 cut(s) 163
Hin1II CATG 3 cut(s) 451, 781, 839
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 6 cut(s) 524, 587, 689, 694, 764, 796
HpaII CCGG 1 cut(s) 163
Hpy166II GTNNAC 3 cut(s) 47, 284, 358
Hpy188I TCNGA 3 cut(s) 476, 685, 715
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 3 cut(s) 47, 284, 358
HpyAV CCTTC 5 cut(s) 419, 437, 572, 577, 710
HpyCH4III ACNGT 2 cut(s) 60, 74
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 191, 236, 297, 752, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 560, 779
HpyF3I CTNAG 3 cut(s) 315, 589, 783
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 3 cut(s) 451, 781, 839
Kzo9I GATC 2 cut(s) 63, 176
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 760
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 373, 624
MalI GATC 2 cut(s) 65, 178
MboI GATC 2 cut(s) 63, 176
MboII GAAGA 4 cut(s) 16, 171, 313, 773
MflI RGATCY 1 cut(s) 176
MluCI AATT 4 cut(s) 37, 153, 709, 855
MlyI GAGTC 3 cut(s) 581, 683, 790
MmeI TCCRAC 2 cut(s) 248, 825
MspA1I CMGCKG 2 cut(s) 127, 638
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 3 cut(s) 68, 173, 201
MvaI CCWGG 3 cut(s) 68, 173, 201
MwoI GCNNNNNNNGC 3 cut(s) 311, 560, 779
NcoI CCATGG 1 cut(s) 777
NdeII GATC 2 cut(s) 63, 176
NlaIII CATG 3 cut(s) 451, 781, 839
NmuCI GTSAC 1 cut(s) 373
PfeI GAWTC 3 cut(s) 524, 694, 764
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 2 cut(s) 129, 775
PleI GAGTC 3 cut(s) 581, 683, 790
PpsI GAGTC 3 cut(s) 581, 683, 790
PshAI GACNNNNGTC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 66, 171, 199
PspEI GGTNACC 1 cut(s) 624
PspGI CCWGG 3 cut(s) 66, 171, 199
PsuI RGATCY 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SatI GCNGC 2 cut(s) 128, 774
Sau3AI GATC 2 cut(s) 63, 176
SchI GAGTC 3 cut(s) 581, 683, 790
ScrFI CCNGG 3 cut(s) 68, 173, 201
Sse9I AATT 4 cut(s) 37, 153, 709, 855
SsiI CCGC 5 cut(s) 127, 139, 254, 305, 613
SspI AATATT 1 cut(s) 494
StyD4I CCNGG 3 cut(s) 66, 171, 199
StyI CCWWGG 2 cut(s) 557, 777
TaaI ACNGT 2 cut(s) 60, 74
TaiI ACGT 1 cut(s) 124
TaqI TCGA 2 cut(s) 692, 808
TasI AATT 4 cut(s) 37, 153, 709, 855
TatI WGTACW 1 cut(s) 32
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 3 cut(s) 524, 694, 764
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 773
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 7 cut(s) 17, 171, 528, 591, 686, 722, 864
TspGWI ACGGA 1 cut(s) 314
XapI RAATTY 2 cut(s) 37, 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XmiI GTMKAC 2 cut(s) 46, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.