Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011351

Physical Location & Seq

Genomic Coordinates Forward (+)

16683902 .. 16688703

Gene Structure 4802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G249700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTCTACAGAGGTAAATTCGGTGATGGTGGTGATGGCCGTGACATGGGTGCAAAGCGTCAGCGGCTAGGTGACCCGGGATCTTCATTCTATGGGACCTCCCCTGGCTCAAGTTATATGTACAATCCAACTCCTTATGCATATGCTGGACAACCTCCACCGTTCCCTGTTGTCAAACTTCGTGGTCTACCATTTGATTGCACAGAAGCTGATGTTGCTGAGTTTCTCCATGGGCTTGACATCGTTGATGTTCTTTTTGTCCACAAGAATAGCAAGTTCACTGGGGAAGCCTTTTGTGTTTTGGGGTATCCTCTTCAGGTTGATTTTGCCCTTTCAAGGAATAGGCAGAATATGGGCAGGAGATATGTTGAGGTGTTCAGAAGTAAGAGGCAGGAATATTACAAGGCAATAGCAAATGAAGTTTCTGATGCTCGTGGCGGTTCCCCTCGCAGAAATGTTCCAAGGGCCAAATCTTATGATGAAGGGAAGGACTCAGCAGAACATACAGGGGTATTGCGGTTGAGGGGATTGCCATTTTCCGCCGGCAAGGATGACATAATGGATTTTTTTAAGGACTTTGTGTTGTCAGAGAGCTCAGTTCATTTTACAATGAATTCAGAAGGCAGGCCAACTGGGGAAGGGTTTGTAGAGTTTGCAAGTGCAGAAGATTCCAAGGCAGCTATGGCTAAGGATAGGATGACACTTGGAAGTCGATATATAGAGTTGTTCCCCTCATCGCACGAGGAGTTGGATGAAGCAGTTTCAAGAGGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0008150 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043484 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

28.74

Weight (kDa)

6.54

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20890
fragaria_vesca	FvH4_3g28820 FvH4_3g28820
malus_domestica	MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica	Prupe.4G249700_v2.0.a1
pyrus_communis	pycom03g13230 pycom11g16840
rosa_chinensis	RchiOBHm_Chr5g0052191
rosa_laevigata	RLG00000034838
rosa_multiflora	Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00028000
rosa_rugosa	Rorug05G0274300 Rorug05G0274400
rosa_samantha	Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana	Rw5G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	4 cut(s)	64, 438, 517, 540
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	17, 613
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	46, 336
AgsI	TTSAA	2 cut(s)	336, 765
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	3 cut(s)	209, 594, 680
AluI	AGCT	3 cut(s)	209, 594, 680
Alw21I	GWGCWC	1 cut(s)	596
AlwI	GGATC	1 cut(s)	88
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	37, 465, 626
ApeKI	GCWGC	1 cut(s)	677
ApoI	RAATTY	2 cut(s)	17, 613
AspS9I	GGNCC	2 cut(s)	96, 465
AsuC2I	CCSGG	2 cut(s)	77, 78
AsuHPI	GGTGA	3 cut(s)	35, 44, 83
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	596
BauI	CACGAG	2 cut(s)	432, 740
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	689
BccI	CCATC	2 cut(s)	20, 29
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	2 cut(s)	77, 78
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	7
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	2 cut(s)	65, 678
BlsI	GCNGC	2 cut(s)	66, 679
Bme1390I	CCNGG	3 cut(s)	77, 78, 105
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	96, 465
BmiI	GGNNCC	2 cut(s)	97, 442
BmrFI	CCNGG	3 cut(s)	77, 78, 105
BmrI	ACTGGG	2 cut(s)	291, 642
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	2 cut(s)	291, 642
Bpu10I	CCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	2 cut(s)	77, 78
BsaJI	CCNNGG	5 cut(s)	76, 103, 229, 461, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 336
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	286, 637
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	5 cut(s)	76, 103, 229, 461, 672
BseGI	GGATG	3 cut(s)	556, 702, 757
BseLI	CCNNNNNNNGG	2 cut(s)	46, 336
BseMII	CTCAG	3 cut(s)	210, 507, 609
BseNI	ACTGG	2 cut(s)	286, 637
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	681
BshFI	GGCC	3 cut(s)	39, 467, 628
BsiHKAI	GWGCWC	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	77, 543
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	46, 336
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	39, 467, 628
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	80
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	4 cut(s)	64, 438, 517, 540
BspANI	GGCC	3 cut(s)	39, 467, 628
BspCNI	CTCAG	3 cut(s)	211, 506, 608
BspLI	GGNNCC	2 cut(s)	97, 442
BspPI	GGATC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	286, 637
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	5 cut(s)	76, 103, 229, 461, 672
BssMI	GATC	1 cut(s)	80
BssSI	CACGAG	2 cut(s)	432, 740
BssT1I	CCWWGG	3 cut(s)	229, 461, 672
Bst2BI	CACGAG	2 cut(s)	432, 740
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	162, 774
Bst6I	CTCTTC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	544, 626
BstDEI	CTNAG	4 cut(s)	219, 493, 595, 687
BstDSI	CCRYGG	1 cut(s)	229
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	556, 702, 757
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 215, 683
BstNI	CCWGG	1 cut(s)	105
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	75, 76, 103
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	39, 467, 628
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	720
BtsCI	GGATG	3 cut(s)	556, 702, 757
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	544, 626
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	96, 465
Cfr9I	CCCGGG	1 cut(s)	76
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	2 cut(s)	46, 230
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	4 cut(s)	219, 493, 595, 687
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	529
Ecl136II	GAGCTC	1 cut(s)	594
Eco130I	CCWWGG	3 cut(s)	229, 461, 672
Eco24I	GRGCYC	1 cut(s)	596
Eco47I	GGWCC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	96
EcoO65I	GGTNACC	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	3 cut(s)	229, 461, 672
EcoT22I	ATGCAT	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	3 cut(s)	229, 461, 672
FaeI	CATG	2 cut(s)	49, 233
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	45, 229
FauNDI	CATATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	65, 678
FokI	GGATG	3 cut(s)	563, 709, 764
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	2 cut(s)	65, 678
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	2 cut(s)	65, 678
HaeIII	GGCC	3 cut(s)	39, 467, 628
HapII	CCGG	2 cut(s)	77, 543
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	49, 233
HinfI	GANTC	2 cut(s)	491, 668
HpaII	CCGG	2 cut(s)	77, 543
HphI	GGTGA	3 cut(s)	35, 44, 83
Hpy166II	GTNNAC	3 cut(s)	188, 262, 279
Hpy188I	TCNGA	4 cut(s)	380, 427, 589, 619
Hpy188III	TCNNGA	1 cut(s)	765
Hpy8I	GTNNAC	3 cut(s)	188, 262, 279
HpyAV	CCTTC	4 cut(s)	476, 481, 614, 632
HpyCH4III	ACNGT	2 cut(s)	162, 774
HpyCH4V	TGCA	5 cut(s)	53, 140, 201, 656, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 215, 683
HpyF3I	CTNAG	4 cut(s)	219, 493, 595, 687
Hsp92II	CATG	2 cut(s)	49, 233
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
Kzo9I	GATC	1 cut(s)	80
Lsp1109I	GCAGC	1 cut(s)	689
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	41, 71
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	3 cut(s)	75, 305, 677
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	2 cut(s)	17, 613
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	152, 729
Mph1103I	ATGCAT	1 cut(s)	142
MroNI	GCCGGC	1 cut(s)	542
MseI	TTAA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	2 cut(s)	77, 543
MspR9I	CCNGG	3 cut(s)	77, 78, 105
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	64, 215, 683
NaeI	GCCGGC	1 cut(s)	544
NciI	CCSGG	2 cut(s)	77, 78
NcoI	CCATGG	1 cut(s)	229
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	80
NgoMIV	GCCGGC	1 cut(s)	542
NlaIII	CATG	2 cut(s)	49, 233
NlaIV	GGNNCC	2 cut(s)	97, 442
NmuCI	GTSAC	2 cut(s)	41, 71
NsiI	ATGCAT	1 cut(s)	142
PdiI	GCCGGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	2 cut(s)	66, 679
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	97, 442
PspPI	GGNCC	2 cut(s)	96, 465
PspPPI	RGGWCCY	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	596
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	2 cut(s)	65, 678
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	2 cut(s)	96, 465
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	3 cut(s)	77, 78, 105
SduI	GDGCHC	1 cut(s)	596
SetI	ASST	9 cut(s)	16, 73, 101, 157, 211, 321, 375, 596, 682
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	96
SmaI	CCCGGG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	17, 613
SsiI	CCGC	4 cut(s)	64, 438, 517, 540
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	596
StyD4I	CCNGG	3 cut(s)	75, 76, 103
StyI	CCWWGG	3 cut(s)	229, 461, 672
TaaI	ACNGT	2 cut(s)	162, 774
TaqI	TCGA	1 cut(s)	712
TasI	AATT	2 cut(s)	17, 613
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	41, 71
TseI	GCWGC	1 cut(s)	677
Tsp45I	GTSAC	2 cut(s)	41, 71
TspDTI	ATGAA	6 cut(s)	75, 432, 495, 590, 626, 768
TspMI	CCCGGG	1 cut(s)	76
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	96
XapI	RAATTY	2 cut(s)	17, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmaI	CCCGGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.