MD03G1174800.v1.1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011351
Physical Location & Seq
Reverse (-)
23898929 .. 23902488
3560 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1174800.v1.1.491

Sequence Viewer

Length: 777 bp
ATGTTCTACAGAGGTAAATTTGCTGATGGTGGTGATGGCCGGGAAATGGGTTCAAAGCGTCAGCGGCTAAGTGAGCCAGGATCTTCATTCTATGGGACCTCCCCCGGCTCAAGTTATATGTACAATCCAACTCCTTATGCATATGTTGGACAACCTCCACCTTTCCCAGTCGTCAAGCTTCGTGGTCTACCATTTGATTGCACAGAAGTTGATGTTGCTGAGTTCTTCCATGGTCTTGACATTGTTGATGTTCTTTTTGTCCACAAGAATAGCAAGTTCACTGGGGAAGCTTTTTGTGTTTTGGGGTATCCTCTCCAGGTTGATTTTGCCCTACAAAAGAATAGGCAGAACATGGGCAGGAGATATGTTGAAGTGTTCAGAAGTAAGAGGCAGGAATATTACAAGGCAATAGCCCAAGAAGTATCTGATTCTCGTGGTGGTTCCCCCCGCAGAAATGCCCCAAGGGCCAAATCTTATGATGAAGGGAAGGAATCAGCGGAGCATACCGGGGTATTGCGGTTGAGGGGATTGCCATTTTCAGCTGGGAAGGATGACATAATGGATTTCTTCAAGGACTACGTGTTGTCAGAATCCTCAATTCATTTCACAATGAATTCAGAAGGGAGGCCGACCGGGGAAGGTTTTGTGGAGTTTGCTAGTGCAGAAGACTCCAAGGCAGCGATGGCCAAGGATAGGATGACGCTTGGAAGTCGATACATAGAGTTGTTCCCCTCCACGCATGATGAGTTGGATGAAGCAATATCAAGAGGACGGTGA

Protein Analysis

259

Amino Acids

29.0

Weight (kDa)

6.55

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 173 - 240 6.2e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 187
AciI CCGC 4 cut(s) 64, 448, 497, 517
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 2 cut(s) 37, 684
AcsI RAATTY 2 cut(s) 17, 613
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 46, 693
AflIII ACRYGT 1 cut(s) 579
AgsI TTSAA 3 cut(s) 54, 371, 571
AjnI CCWGG 2 cut(s) 76, 315
AluBI AGCT 3 cut(s) 178, 290, 542
AluI AGCT 3 cut(s) 178, 290, 542
AlwI GGATC 1 cut(s) 88
AoxI GGCC 4 cut(s) 37, 465, 626, 684
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 2 cut(s) 17, 613
AspS9I GGNCC 2 cut(s) 96, 465
AsuC2I CCSGG 4 cut(s) 41, 105, 508, 634
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 686
BauI CACGAG 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 672
BbvI GCAGC 1 cut(s) 689
BccI CCATC 3 cut(s) 20, 29, 676
BciT130I CCWGG 2 cut(s) 78, 317
BciVI GTATCC 1 cut(s) 318
BcnI CCSGG 4 cut(s) 41, 105, 508, 634
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 7
BfuI GTATCC 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 2 cut(s) 65, 678
BlsI GCNGC 2 cut(s) 66, 679
Bme1390I CCNGG 6 cut(s) 41, 78, 105, 317, 508, 634
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 96, 465
BmiI GGNNCC 2 cut(s) 97, 442
BmrFI CCNGG 6 cut(s) 41, 78, 105, 317, 508, 634
BmrI ACTGGG 2 cut(s) 161, 291
BmuI ACTGGG 2 cut(s) 161, 291
BpiI GAAGAC 1 cut(s) 672
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 4 cut(s) 41, 105, 508, 634
BsaAI YACGTR 1 cut(s) 580
BsaJI CCNNGG 7 cut(s) 103, 229, 461, 507, 633, 672, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 693
Bse1I ACTGG 2 cut(s) 167, 286
BseBI CCWGG 2 cut(s) 78, 317
BseDI CCNNGG 7 cut(s) 103, 229, 461, 507, 633, 672, 687
BseGI GGATG 3 cut(s) 556, 702, 757
BseLI CCNNNNNNNGG 2 cut(s) 46, 693
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 167, 286
BseXI GCAGC 1 cut(s) 689
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 681
Bsh1285I CGRYCG 1 cut(s) 633
BshFI GGCC 4 cut(s) 39, 467, 628, 686
BsiEI CGRYCG 1 cut(s) 633
BsiSI CCGG 4 cut(s) 40, 105, 507, 633
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 46, 693
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 4 cut(s) 39, 467, 628, 686
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 80
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 4 cut(s) 64, 448, 497, 517
BspANI GGCC 4 cut(s) 39, 467, 628, 686
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 97, 442
BspPI GGATC 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 2 cut(s) 167, 286
BssECI CCNNGG 7 cut(s) 103, 229, 461, 507, 633, 672, 687
BssMI GATC 1 cut(s) 80
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 4 cut(s) 229, 461, 672, 687
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 78, 317
Bst4CI ACNGT 1 cut(s) 774
BstAUI TGTACA 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 580
BstDEI CTNAG 2 cut(s) 68, 219
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 3 cut(s) 556, 702, 757
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMCI CGRYCG 1 cut(s) 633
BstMWI GCNNNNNNNGC 4 cut(s) 64, 73, 464, 683
BstNI CCWGG 2 cut(s) 78, 317
BstSCI CCNGG 6 cut(s) 39, 76, 103, 315, 506, 632
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 689
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 4 cut(s) 39, 467, 628, 686
BtgI CCRYGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 695
BtsCI GGATG 3 cut(s) 556, 702, 757
BtsIMutI CAGTG 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 96, 465
CseI GACGC 2 cut(s) 47, 709
Csp6I GTAC 1 cut(s) 121
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 3 cut(s) 230, 352, 740
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 68, 219
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EaeI YGGCCR 2 cut(s) 37, 684
Eco130I CCWWGG 4 cut(s) 229, 461, 672, 687
Eco47I GGWCC 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 2 cut(s) 76, 315
EcoT14I CCWWGG 4 cut(s) 229, 461, 672, 687
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 4 cut(s) 229, 461, 672, 687
FaeI CATG 3 cut(s) 233, 355, 743
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 229, 351, 739
FauI CCCGC 1 cut(s) 455
FauNDI CATATG 1 cut(s) 142
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 65, 678
FokI GGATG 3 cut(s) 563, 709, 764
Fsp4HI GCNGC 2 cut(s) 65, 678
FspBI CTAG 1 cut(s) 657
GluI GCNGC 2 cut(s) 65, 678
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 4 cut(s) 39, 467, 628, 686
HapII CCGG 4 cut(s) 40, 105, 507, 633
HgaI GACGC 2 cut(s) 47, 709
Hin1II CATG 3 cut(s) 233, 355, 743
HindIII AAGCTT 2 cut(s) 176, 288
HinfI GANTC 4 cut(s) 428, 491, 590, 668
HpaII CCGG 4 cut(s) 40, 105, 507, 633
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 188, 262, 279
Hpy188I TCNGA 4 cut(s) 380, 427, 589, 619
Hpy188III TCNNGA 2 cut(s) 236, 765
Hpy8I GTNNAC 3 cut(s) 188, 262, 279
HpyAV CCTTC 5 cut(s) 476, 481, 541, 614, 632
HpyCH4III ACNGT 1 cut(s) 774
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 3 cut(s) 140, 201, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 73, 464, 683
HpyF3I CTNAG 2 cut(s) 68, 219
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 3 cut(s) 233, 355, 743
Kzo9I GATC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 1 cut(s) 689
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 579
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 4 cut(s) 75, 217, 559, 677
MflI RGATCY 1 cut(s) 80
MlsI TGGCCA 1 cut(s) 686
MluCI AATT 3 cut(s) 17, 597, 613
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 1 cut(s) 662
MmeI TCCRAC 3 cut(s) 127, 152, 729
Mox20I TGGCCA 1 cut(s) 686
Mph1103I ATGCAT 1 cut(s) 142
MscI TGGCCA 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 3 cut(s) 64, 497, 542
MspI CCGG 4 cut(s) 40, 105, 507, 633
MspR9I CCNGG 6 cut(s) 41, 78, 105, 317, 508, 634
MvaI CCWGG 2 cut(s) 78, 317
MwoI GCNNNNNNNGC 4 cut(s) 64, 73, 464, 683
NciI CCSGG 4 cut(s) 41, 105, 508, 634
NcoI CCATGG 1 cut(s) 229
NdeI CATATG 1 cut(s) 142
NdeII GATC 1 cut(s) 80
NlaIII CATG 3 cut(s) 233, 355, 743
NlaIV GGNNCC 2 cut(s) 97, 442
NsiI ATGCAT 1 cut(s) 142
PfeI GAWTC 3 cut(s) 428, 491, 590
PkrI GCNGC 2 cut(s) 66, 679
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
Ppu21I YACGTR 1 cut(s) 580
PpuMI RGGWCCY 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 76, 315
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 76, 315
PspN4I GGNNCC 2 cut(s) 97, 442
PspPI GGNCC 2 cut(s) 96, 465
PspPPI RGGWCCY 1 cut(s) 96
PsuI RGATCY 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 2 cut(s) 65, 678
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 2 cut(s) 96, 465
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 6 cut(s) 41, 78, 105, 317, 508, 634
SfcI CTRYAG 1 cut(s) 7
SinI GGWCC 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 3 cut(s) 17, 597, 613
SsiI CCGC 4 cut(s) 64, 448, 497, 517
SspI AATATT 1 cut(s) 398
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 6 cut(s) 39, 76, 103, 315, 506, 632
StyI CCWWGG 4 cut(s) 229, 461, 672, 687
TaaI ACNGT 1 cut(s) 774
TaiI ACGT 1 cut(s) 582
TaqI TCGA 1 cut(s) 712
TasI AATT 3 cut(s) 17, 597, 613
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 428, 491, 590
TscAI CASTG 1 cut(s) 286
TseI GCWGC 1 cut(s) 677
TspDTI ATGAA 5 cut(s) 75, 495, 590, 626, 768
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 2 cut(s) 17, 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.