Rh5AG346800

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011351
Physical Location & Seq
Reverse (-)
57200653 .. 57203931
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG346800.1

Sequence Viewer

Length: 786 bp
ATGCTACATCCAAAGAAATGTGATGGCCGTGAAATGGGAGCAAAGCGTCAGCGGCTTGATCACCGTATTGACCACCGGCTTGACCAGGGATCTTCATTCTATGGGAGTTCCCCTGGTTCAAGTTATATGTTCAATCCAACTCCTTCTGCATATGCTGGACAACCTCCACCTTTTCCTGTCGTCAAACTTCGTGGTCTTCCATTTGATTGCACAGAAGCTGATGTTGCTGAGTTCTTCCATGGTCTTGACATCGTTGATATTCTTTTTGTTCACAAGAATAGCAAGGTCACAGGGGAAGCCTATTGTGTTTTGGGATATCCCCTTCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAGAACATGGGGAGGAGATATGTTGAGGTGTTCAGAAGCAAGAGGCAGGAATATTACAAGGCAATAGCAAATGAAGTTTCTGATCCTCGTGGTGCTTCTCCTCGCAGAAATGTCCCAAGGGCTAAATCTTATGATGAAGGGAAGGACTCAGCAGAACATACAGGGGTATTGCGGTTGAGGGGATTGCCATTTTCAGCAGGCAAAGATGATATAATGGATTTTTTCAAGGATTTTGTGTTGTCAGAGGACTCAATTCATTTTACAATGAATTCAGAAGGGAGGCCAACTGGGGAAGCATTTGTGGAGTTTGCAAGTGCAGAAGATTCCAGAGCAGCTATGGCTAAGGATAGGATGACTCTTGGAAGTCGATATATAGAGTTGTTCCCCTCATCACATGAGGATTTGGATGAAGCAGTTTCAAAAGGACGATGA

Protein Analysis

261

Amino Acids

29.43

Weight (kDa)

6.72

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 176 - 243 1.3e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 52, 526
AclWI GGATC 2 cut(s) 97, 431
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 34, 345
AgsI TTSAA 5 cut(s) 120, 133, 344, 580, 774
AjnI CCWGG 2 cut(s) 84, 112
AluBI AGCT 2 cut(s) 218, 689
AluI AGCT 2 cut(s) 218, 689
AlwI GGATC 2 cut(s) 97, 431
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 2 cut(s) 25, 635
ApeKI GCWGC 1 cut(s) 686
ApoI RAATTY 1 cut(s) 622
AsuHPI GGTGA 1 cut(s) 53
BauI CACGAG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 698
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 12
BciT130I CCWGG 2 cut(s) 86, 114
BclI TGATCA 1 cut(s) 58
BisI GCNGC 2 cut(s) 53, 687
BlsI GCNGC 2 cut(s) 54, 688
Bme1390I CCNGG 2 cut(s) 86, 114
BmrFI CCNGG 2 cut(s) 86, 114
BmrI ACTGGG 1 cut(s) 651
BmuI ACTGGG 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 696
BsaJI CCNNGG 4 cut(s) 85, 112, 238, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 345
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 646
BseBI CCWGG 2 cut(s) 86, 114
BseDI CCNNGG 4 cut(s) 85, 112, 238, 470
BseGI GGATG 3 cut(s) 7, 711, 766
BseLI CCNNNNNNNGG 2 cut(s) 34, 345
BseMII CTCAG 2 cut(s) 219, 516
BseNI ACTGG 1 cut(s) 646
BseRI GAGGAG 2 cut(s) 382, 444
BseXI GCAGC 1 cut(s) 698
BsgI GTGCAG 1 cut(s) 690
BshFI GGCC 2 cut(s) 27, 637
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 34, 345
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 2 cut(s) 27, 637
Bsp143I GATC 3 cut(s) 58, 89, 436
Bsp19I CCATGG 1 cut(s) 238
BspACI CCGC 2 cut(s) 52, 526
BspANI GGCC 2 cut(s) 27, 637
BspCNI CTCAG 2 cut(s) 220, 515
BspPI GGATC 2 cut(s) 97, 431
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 1 cut(s) 646
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 4 cut(s) 85, 112, 238, 470
BssMI GATC 3 cut(s) 58, 89, 436
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 238, 470
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 86, 114
Bst4CI ACNGT 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 3 cut(s) 228, 502, 696
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 3 cut(s) 7, 711, 766
BstKTI GATC 3 cut(s) 61, 92, 439
BstMBI GATC 3 cut(s) 58, 89, 436
BstMWI GCNNNNNNNGC 3 cut(s) 52, 224, 692
BstNI CCWGG 2 cut(s) 86, 114
BstSCI CCNGG 2 cut(s) 84, 112
BstV1I GCAGC 1 cut(s) 698
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 2 cut(s) 27, 637
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 3 cut(s) 7, 711, 766
Cac8I GCNNGC 1 cut(s) 553
CaiI CAGNNNCTG 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 75
CseI GACGC 1 cut(s) 35
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 3 cut(s) 239, 361, 749
CviJI RGCY 9 cut(s) 27, 55, 79, 218, 299, 476, 637, 689, 695
CviKI_1 RGCY 9 cut(s) 27, 55, 79, 218, 299, 476, 637, 689, 695
DdeI CTNAG 3 cut(s) 228, 502, 696
DpnI GATC 3 cut(s) 60, 91, 438
DpnII GATC 3 cut(s) 58, 89, 436
EaeI YGGCCR 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 238, 470
Eco32I GATATC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 622
EcoRII CCWGG 2 cut(s) 84, 112
EcoRV GATATC 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 238, 470
ErhI CCWWGG 2 cut(s) 238, 470
FaeI CATG 3 cut(s) 242, 364, 752
FaqI GGGAC 1 cut(s) 452
FatI CATG 3 cut(s) 238, 360, 748
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 53, 687
FokI GGATG 2 cut(s) 718, 773
Fsp4HI GCNGC 2 cut(s) 53, 687
GluI GCNGC 2 cut(s) 53, 687
HaeIII GGCC 2 cut(s) 27, 637
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 242, 364, 752
HinfI GANTC 4 cut(s) 500, 602, 677, 709
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 4 cut(s) 389, 436, 598, 628
Hpy188III TCNNGA 2 cut(s) 245, 681
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 6 cut(s) 153, 332, 350, 485, 490, 623
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 149, 210, 665, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 224, 692
HpyF3I CTNAG 3 cut(s) 228, 502, 696
Hsp92II CATG 3 cut(s) 242, 364, 752
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 58, 89, 436
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 698
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 60, 91, 438
MboI GATC 3 cut(s) 58, 89, 436
MboII GAAGA 4 cut(s) 84, 188, 226, 686
MflI RGATCY 1 cut(s) 89
MluCI AATT 2 cut(s) 606, 622
MlyI GAGTC 3 cut(s) 494, 596, 703
MmeI TCCRAC 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 86, 114
MvaI CCWGG 2 cut(s) 86, 114
MwoI GCNNNNNNNGC 3 cut(s) 52, 224, 692
NcoI CCATGG 1 cut(s) 238
NdeI CATATG 1 cut(s) 151
NdeII GATC 3 cut(s) 58, 89, 436
NlaIII CATG 3 cut(s) 242, 364, 752
NmuCI GTSAC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 677
PkrI GCNGC 2 cut(s) 54, 688
PleI GAGTC 3 cut(s) 494, 596, 703
PpsI GAGTC 3 cut(s) 494, 596, 703
Psp6I CCWGG 2 cut(s) 84, 112
PspGI CCWGG 2 cut(s) 84, 112
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 89
SatI GCNGC 2 cut(s) 53, 687
Sau3AI GATC 3 cut(s) 58, 89, 436
SchI GAGTC 3 cut(s) 494, 596, 703
ScrFI CCNGG 2 cut(s) 86, 114
SetI ASST 7 cut(s) 166, 172, 220, 288, 330, 384, 691
Sse9I AATT 2 cut(s) 606, 622
SsiI CCGC 2 cut(s) 52, 526
SspI AATATT 1 cut(s) 407
StyD4I CCNGG 2 cut(s) 84, 112
StyI CCWWGG 2 cut(s) 238, 470
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 721
TasI AATT 2 cut(s) 606, 622
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 677
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 686
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 6 cut(s) 84, 441, 504, 599, 635, 777
XapI RAATTY 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.