Rh5BG357400

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011351
Physical Location & Seq
Reverse (-)
55600734 .. 55604032
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG357400.1

Sequence Viewer

Length: 780 bp
ATGTTCTACAGAGGTGATGGCCGTGAAATGGGAGCAAAGCGTCAGCGGCTTGACCACCGTATTGACCACCGGCTTGACCAGGGATCTTCATTCTATGGGAGTTCCCCTGGTTCAAGTTATATGTTCAATCCGACTCCTTCTGCATATGCTGGACAACCTCCACCTTTTCCTGTTGTCAAACTTCGTGGTCTTCCATTTGATTGCACAGAAGCTGATGTTGCTGAGTTCTTCCATGGTCTTGACATCGTTGATATTCTTTTTGTTCACAAGAATGGCAAGGTCACAGGGGAAGCCTATTGTGTTTTGGGATATCCCCTTCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAGAACATGGGGAGGAGATATGTTGAGGTGTTCAGAAGCAAGAGGCAGGAATATTACAAGGCAATAGCAAATGAAGTTTCTGATTCTCGTGGTGCTTCTCCTCGCAGAAATGTCCCAAGGGCTAAATCTTATGATGAAGGGAAGGACTCAGCAGAACATACAGGGGTATTGCGGTTGAGGGGATTGCCATTTTCAGCAGGCAAAGATGATATAATGGATTTTTTCAAGGATTTTGTGTTGTCAGAGGACTCGATTCATTTTACAATGAACTCAGAAGGGAGGCCAACTGGGGAAGCATTTGTGGAGTTTGCAAGTGCAGAAGATTCCAGAGCAGCTATGGCTAAGGATAGGATGACTCTTGGAAGTCGATATATAGAGTTGTTCCCCTCATCACATGAGGATTTGGATGAAGCAGTTTCAAAAGGACGATGA

Protein Analysis

259

Amino Acids

29.21

Weight (kDa)

6.4

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 174 - 241 1.3e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 46, 520
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 28, 339
AgsI TTSAA 5 cut(s) 114, 127, 338, 574, 768
AjnI CCWGG 2 cut(s) 78, 106
AluBI AGCT 2 cut(s) 212, 683
AluI AGCT 2 cut(s) 212, 683
AlwI GGATC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 2 cut(s) 19, 629
ApeKI GCWGC 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 26
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 692
BccI CCATC 1 cut(s) 11
BceAI ACGGC 1 cut(s) 6
BciT130I CCWGG 2 cut(s) 80, 108
BfmI CTRYAG 1 cut(s) 7
BisI GCNGC 2 cut(s) 47, 681
BlsI GCNGC 2 cut(s) 48, 682
Bme1390I CCNGG 2 cut(s) 80, 108
BmrFI CCNGG 2 cut(s) 80, 108
BmrI ACTGGG 1 cut(s) 645
BmuI ACTGGG 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 690
BsaJI CCNNGG 4 cut(s) 79, 106, 232, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 339
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 640
BseBI CCWGG 2 cut(s) 80, 108
BseDI CCNNGG 4 cut(s) 79, 106, 232, 464
BseGI GGATG 2 cut(s) 705, 760
BseLI CCNNNNNNNGG 2 cut(s) 28, 339
BseMII CTCAG 3 cut(s) 213, 510, 633
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 2 cut(s) 376, 438
BseXI GCAGC 1 cut(s) 692
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 2 cut(s) 21, 631
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 28, 339
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 2 cut(s) 21, 631
Bsp143I GATC 1 cut(s) 83
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 2 cut(s) 46, 520
BspANI GGCC 2 cut(s) 21, 631
BspCNI CTCAG 3 cut(s) 214, 509, 632
BspPI GGATC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 69
BsrI ACTGG 1 cut(s) 640
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 4 cut(s) 79, 106, 232, 464
BssMI GATC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 232, 464
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 80, 108
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 4 cut(s) 222, 496, 619, 690
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 705, 760
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 3 cut(s) 46, 218, 686
BstNI CCWGG 2 cut(s) 80, 108
BstSCI CCNGG 2 cut(s) 78, 106
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 2 cut(s) 21, 631
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 2 cut(s) 705, 760
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 69
CseI GACGC 1 cut(s) 29
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 3 cut(s) 233, 355, 743
CviJI RGCY 9 cut(s) 21, 49, 73, 212, 293, 470, 631, 683, 689
CviKI_1 RGCY 9 cut(s) 21, 49, 73, 212, 293, 470, 631, 683, 689
DdeI CTNAG 4 cut(s) 222, 496, 619, 690
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 19
Eco130I CCWWGG 2 cut(s) 232, 464
Eco32I GATATC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 78, 106
EcoRV GATATC 1 cut(s) 311
EcoT14I CCWWGG 2 cut(s) 232, 464
ErhI CCWWGG 2 cut(s) 232, 464
FaeI CATG 3 cut(s) 236, 358, 746
FaqI GGGAC 1 cut(s) 446
FatI CATG 3 cut(s) 232, 354, 742
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 47, 681
FokI GGATG 2 cut(s) 712, 767
Fsp4HI GCNGC 2 cut(s) 47, 681
GluI GCNGC 2 cut(s) 47, 681
HaeIII GGCC 2 cut(s) 21, 631
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 236, 358, 746
HinfI GANTC 7 cut(s) 133, 431, 494, 596, 601, 671, 703
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 5 cut(s) 132, 383, 430, 592, 622
Hpy188III TCNNGA 2 cut(s) 239, 675
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 6 cut(s) 147, 326, 344, 479, 484, 617
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 143, 204, 659, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 218, 686
HpyF3I CTNAG 4 cut(s) 222, 496, 619, 690
Hsp92II CATG 3 cut(s) 236, 358, 746
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 692
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 4 cut(s) 78, 182, 220, 680
MflI RGATCY 1 cut(s) 83
MlyI GAGTC 4 cut(s) 127, 488, 590, 697
MmeI TCCRAC 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 2 cut(s) 80, 108
MvaI CCWGG 2 cut(s) 80, 108
MwoI GCNNNNNNNGC 3 cut(s) 46, 218, 686
NcoI CCATGG 1 cut(s) 232
NdeI CATATG 1 cut(s) 145
NdeII GATC 1 cut(s) 83
NlaIII CATG 3 cut(s) 236, 358, 746
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 3 cut(s) 431, 601, 671
PkrI GCNGC 2 cut(s) 48, 682
PleI GAGTC 4 cut(s) 127, 488, 590, 697
PpsI GAGTC 4 cut(s) 127, 488, 590, 697
Psp6I CCWGG 2 cut(s) 78, 106
PspGI CCWGG 2 cut(s) 78, 106
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 270
SatI GCNGC 2 cut(s) 47, 681
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 4 cut(s) 127, 488, 590, 697
ScrFI CCNGG 2 cut(s) 80, 108
SetI ASST 8 cut(s) 16, 160, 166, 214, 282, 324, 378, 685
SfcI CTRYAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 270
SsiI CCGC 2 cut(s) 46, 520
SspI AATATT 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 78, 106
StyI CCWWGG 2 cut(s) 232, 464
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 599, 715
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 3 cut(s) 431, 601, 671
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 6 cut(s) 78, 435, 498, 593, 629, 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.