RLG00000034838

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011351
Physical Location & Seq
Reverse (-)
55623875 .. 55626695
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034838

Sequence Viewer

Length: 780 bp
ATGTTCTACAGAGGTGATGGCCGTGAAATGGGAGCAAAGCGTCAGCGGCTTGACCACCGTATTGACCACCGGCTTGACCAGGGATCTTCATTCTATGGGAGTTCCCCTGGTTCAAGTTATCTGTTCAATCCGACTCCTTCTGCATATGCTGGACAACCTCCACCTTTTCCTGTTGTCAAACTTCGTGGTCTTCCATTTGATTGCACAGAAGCTGATGTTGCTGAGTTCTTTCATGGTCTTGACATCGTTGATATTCTTTTTGTTCACAAGAATAGCAAGGTCACAGGGGAAGCCTATTGTGTTTTGGGATATCCCCTTCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAGAACATGGGGAGGAGATATGTTGAGGTGTTCAGAAGCAAGAGGCAGGAATATTACAAGGCAATAGCAAATGAAGTTTCTGATTCTCGTGGTGCTTCTCCTCGCAGAAATGTCCCAAGGGCTAAATCTTATGATGAAGGAAAGGACTCAGCAGAACATACAGGGGTATTGCGATTGAGGGGATTGCCATTTTCAGCTGGCAAAGATGATATAATGGACTTTTTCAAGGATTTTGTGTTGTCGGAGGACTCGATTCATTTTACAATGAACTCAGAAGGGAGGCCAACTGGGGAAGCATTTGTGGAGTTTGCGAGTTCAGAAGATTCCAAAGTAGCTATGGCTAAGGATAGGATGACTCTTGGAAGTCGATATATAGAGTTGTTCCCCTCATCACATGAGGATTTGGATGAAGCAGTTTCGAAAGGACGATGA

Protein Analysis

260

Amino Acids

29.24

Weight (kDa)

6.4

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 174 - 241 3.6e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 28, 339
AgsI TTSAA 4 cut(s) 114, 127, 338, 574
AjnI CCWGG 2 cut(s) 78, 106
AluBI AGCT 3 cut(s) 212, 545, 683
AluI AGCT 3 cut(s) 212, 545, 683
AlwI GGATC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 2 cut(s) 19, 629
AsuHPI GGTGA 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 767
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 182
BccI CCATC 1 cut(s) 11
BceAI ACGGC 1 cut(s) 6
BciT130I CCWGG 2 cut(s) 80, 108
BfmI CTRYAG 1 cut(s) 7
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 80, 108
BmrFI CCNGG 2 cut(s) 80, 108
BmrI ACTGGG 1 cut(s) 645
BmuI ACTGGG 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 690
Bpu14I TTCGAA 1 cut(s) 767
BsaJI CCNNGG 3 cut(s) 79, 106, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 339
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 640
BseBI CCWGG 2 cut(s) 80, 108
BseDI CCNNGG 3 cut(s) 79, 106, 464
BseGI GGATG 2 cut(s) 705, 760
BseLI CCNNNNNNNGG 2 cut(s) 28, 339
BseMII CTCAG 3 cut(s) 213, 510, 633
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 2 cut(s) 376, 438
BshFI GGCC 2 cut(s) 21, 631
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 28, 339
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 2 cut(s) 21, 631
Bsp119I TTCGAA 1 cut(s) 767
Bsp143I GATC 1 cut(s) 83
BspACI CCGC 1 cut(s) 46
BspANI GGCC 2 cut(s) 21, 631
BspCNI CTCAG 3 cut(s) 214, 509, 632
BspPI GGATC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 767
BsrFI RCCGGY 1 cut(s) 69
BsrI ACTGG 1 cut(s) 640
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 3 cut(s) 79, 106, 464
BssMI GATC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 464
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 80, 108
Bst4CI ACNGT 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 4 cut(s) 222, 496, 619, 690
BstF5I GGATG 2 cut(s) 705, 760
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 2 cut(s) 46, 218
BstNI CCWGG 2 cut(s) 80, 108
BstSCI CCNGG 2 cut(s) 78, 106
BstSFI CTRYAG 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 2 cut(s) 21, 631
BtsCI GGATG 2 cut(s) 705, 760
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 69
CseI GACGC 1 cut(s) 29
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 3 cut(s) 233, 355, 743
DdeI CTNAG 4 cut(s) 222, 496, 619, 690
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 464
Eco32I GATATC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 78, 106
EcoRV GATATC 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 3 cut(s) 236, 358, 746
FaqI GGGAC 1 cut(s) 446
FatI CATG 3 cut(s) 232, 354, 742
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 2 cut(s) 712, 767
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 2 cut(s) 21, 631
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 236, 358, 746
HinfI GANTC 7 cut(s) 133, 431, 494, 596, 601, 671, 703
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 6 cut(s) 132, 383, 430, 592, 622, 667
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 5 cut(s) 147, 326, 344, 479, 617
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 143, 204
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 218
HpyF3I CTNAG 4 cut(s) 222, 496, 619, 690
Hsp92II CATG 3 cut(s) 236, 358, 746
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 3 cut(s) 78, 182, 680
MflI RGATCY 1 cut(s) 83
MlyI GAGTC 4 cut(s) 127, 488, 590, 697
MmeI TCCRAC 2 cut(s) 155, 570
MspA1I CMGCKG 2 cut(s) 46, 545
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 2 cut(s) 80, 108
MvaI CCWGG 2 cut(s) 80, 108
MwoI GCNNNNNNNGC 2 cut(s) 46, 218
NdeI CATATG 1 cut(s) 145
NdeII GATC 1 cut(s) 83
NlaIII CATG 3 cut(s) 236, 358, 746
NmuCI GTSAC 1 cut(s) 280
NspV TTCGAA 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 596
PfeI GAWTC 3 cut(s) 431, 601, 671
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 4 cut(s) 127, 488, 590, 697
PpsI GAGTC 4 cut(s) 127, 488, 590, 697
Psp6I CCWGG 2 cut(s) 78, 106
PspGI CCWGG 2 cut(s) 78, 106
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 545
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 4 cut(s) 127, 488, 590, 697
ScrFI CCNGG 2 cut(s) 80, 108
SetI ASST 9 cut(s) 16, 160, 166, 214, 282, 324, 378, 547, 685
SfcI CTRYAG 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 767
SsiI CCGC 1 cut(s) 46
SspI AATATT 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 78, 106
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 599, 715, 767
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 3 cut(s) 431, 601, 671
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 7 cut(s) 78, 221, 435, 498, 593, 629, 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.