Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006157.1

Orthogroup ID

OG0011351

Physical Location & Seq

Genomic Coordinates Forward (+)

37797 .. 38549

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006157.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgggagcaaagcgtcagcggcttgaccaccgtattgaccaccggcttgaccagggatcttcattctatgggagttcccctggttcaagttatatgttcaatccgaccccttctgcatatgctggacaacctccaccttttcctgttgtcaaacttcgtggtcttccatttgattgcacagaagctgatgttgctgagttcttccatggtcttgacatcgttgatattctttttgttcacaagaatagcaaggtcacaggggaagcctattgtgttttgggatatccccttcaggttgattttgcccttcaaaggaataggcagaacatggggaggagatatgttgaggtgttcagaagcaagaggcaggaatattacaaggcaatagcaaatgaagtttctgatcctcgtggtgcttctcctcgcagaaatgtcccaagggctaaatcttatgatgaagggaaggactcagcagaacatacaggggtattgcggttgaggggattgccattttcagcaggcaaagatgatataatggactttttcaaggattttgtgttgtcagaggactcgattcattttacaatgaactcagaagggaggccaactggggaagcatttgtggagtttgcaagtgcagaagattccagagcagctatggctaaggataggatgacccttggaagtcgatatatagagttgttcccctcatcacatgaggatttggatgaagcagtttcaaaaggacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0008150 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043484 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

250

Amino Acids

28.14

Weight (kDa)

6.4

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20890
fragaria_vesca	FvH4_3g28820 FvH4_3g28820
malus_domestica	MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica	Prupe.4G249700_v2.0.a1
pyrus_communis	pycom03g13230 pycom11g16840
rosa_chinensis	RchiOBHm_Chr5g0052191
rosa_laevigata	RLG00000034838
rosa_multiflora	Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00028000
rosa_rugosa	Rorug05G0274300 Rorug05G0274400
rosa_samantha	Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana	Rw5G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	19, 493
AclWI	GGATC	2 cut(s)	64, 398
AcuI	CTGAAG	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	5 cut(s)	87, 100, 311, 547, 741
AjnI	CCWGG	2 cut(s)	51, 79
AluBI	AGCT	2 cut(s)	185, 656
AluI	AGCT	2 cut(s)	185, 656
AlwI	GGATC	2 cut(s)	64, 398
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	1 cut(s)	653
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	665
BciT130I	CCWGG	2 cut(s)	53, 81
BisI	GCNGC	2 cut(s)	20, 654
BlsI	GCNGC	2 cut(s)	21, 655
Bme1390I	CCNGG	2 cut(s)	53, 81
BmrFI	CCNGG	2 cut(s)	53, 81
BmrI	ACTGGG	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	663
BsaJI	CCNNGG	5 cut(s)	52, 79, 205, 437, 679
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	53, 81
BseDI	CCNNGG	5 cut(s)	52, 79, 205, 437, 679
BseGI	GGATG	2 cut(s)	678, 733
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	186, 483, 606
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	2 cut(s)	349, 411
BseXI	GCAGC	1 cut(s)	665
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	604
Bsp143I	GATC	2 cut(s)	56, 403
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	2 cut(s)	19, 493
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	3 cut(s)	187, 482, 605
BspPI	GGATC	2 cut(s)	64, 398
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	5 cut(s)	52, 79, 205, 437, 679
BssMI	GATC	2 cut(s)	56, 403
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	3 cut(s)	205, 437, 679
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	53, 81
Bst4CI	ACNGT	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	4 cut(s)	195, 469, 592, 663
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	678, 733
BstKTI	GATC	2 cut(s)	59, 406
BstMBI	GATC	2 cut(s)	56, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 191, 659
BstNI	CCWGG	2 cut(s)	53, 81
BstSCI	CCNGG	2 cut(s)	51, 79
BstV1I	GCAGC	1 cut(s)	665
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	604
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	678, 733
Cac8I	GCNNGC	1 cut(s)	520
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	42
CseI	GACGC	1 cut(s)	2
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	3 cut(s)	206, 328, 716
CviJI	RGCY	8 cut(s)	22, 46, 185, 266, 443, 604, 656, 662
CviKI_1	RGCY	8 cut(s)	22, 46, 185, 266, 443, 604, 656, 662
DdeI	CTNAG	4 cut(s)	195, 469, 592, 663
DpnI	GATC	2 cut(s)	58, 405
DpnII	GATC	2 cut(s)	56, 403
Eco130I	CCWWGG	3 cut(s)	205, 437, 679
Eco32I	GATATC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	51, 79
EcoRV	GATATC	1 cut(s)	284
EcoT14I	CCWWGG	3 cut(s)	205, 437, 679
ErhI	CCWWGG	3 cut(s)	205, 437, 679
FaeI	CATG	3 cut(s)	209, 331, 719
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	205, 327, 715
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	20, 654
FokI	GGATG	2 cut(s)	685, 740
Fsp4HI	GCNGC	2 cut(s)	20, 654
GluI	GCNGC	2 cut(s)	20, 654
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	2
Hin1II	CATG	3 cut(s)	209, 331, 719
HinfI	GANTC	4 cut(s)	467, 569, 574, 644
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	5 cut(s)	105, 356, 403, 565, 595
Hpy188III	TCNNGA	2 cut(s)	212, 648
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	6 cut(s)	120, 299, 317, 452, 457, 590
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	116, 177, 632, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 191, 659
HpyF3I	CTNAG	4 cut(s)	195, 469, 592, 663
Hsp92II	CATG	3 cut(s)	209, 331, 719
Kzo9I	GATC	2 cut(s)	56, 403
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	665
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	58, 405
MboI	GATC	2 cut(s)	56, 403
MboII	GAAGA	4 cut(s)	51, 155, 193, 653
MflI	RGATCY	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	461, 563
MmeI	TCCRAC	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	53, 81
MvaI	CCWGG	2 cut(s)	53, 81
MwoI	GCNNNNNNNGC	3 cut(s)	19, 191, 659
NcoI	CCATGG	1 cut(s)	205
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	2 cut(s)	56, 403
NlaIII	CATG	3 cut(s)	209, 331, 719
NmuCI	GTSAC	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	574, 644
PkrI	GCNGC	2 cut(s)	21, 655
PleI	GAGTC	2 cut(s)	461, 563
PpsI	GAGTC	2 cut(s)	461, 563
Psp6I	CCWGG	2 cut(s)	51, 79
PspGI	CCWGG	2 cut(s)	51, 79
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	56
SatI	GCNGC	2 cut(s)	20, 654
Sau3AI	GATC	2 cut(s)	56, 403
SchI	GAGTC	2 cut(s)	461, 563
ScrFI	CCNGG	2 cut(s)	53, 81
SetI	ASST	7 cut(s)	133, 139, 187, 255, 297, 351, 658
SsiI	CCGC	2 cut(s)	19, 493
SspI	AATATT	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	51, 79
StyI	CCWWGG	3 cut(s)	205, 437, 679
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	2 cut(s)	572, 688
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	574, 644
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	6 cut(s)	51, 408, 471, 566, 602, 744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.