MD11G1192900.v1.1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011351
Physical Location & Seq
Reverse (-)
27412153 .. 27416547
4395 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1192900.v1.1.491

Sequence Viewer

Length: 777 bp
ATGTTCTACAGAGGTAAATTTTCTGATGGTGGTGATGGCCGTGAAATGGGCTCAAAGCGTCAGCGGCTAGGCGAGCCAGGATCTTCATTCTATGGAACCTCCCCAGGCTCAAGTTATATGTACAATCCTACTCCTTATGCATATGTTGGACAGCCTCCGCCTTTCCCTGTCGTTAAGCTTCGTGGTCTACCATTTGATTGCACGGAAGTTGATGTTGCTGAGTTCTTCCATGGTCTTGACATCATTGATGTTCTTTTTGTCCACAAGAATAGCAAGTTCACTGGGGAAGCATTTTGTGTTTTGGGGTATCCTCTCCAGGTTGATTTTGCCCTTCAAAAGAATAGGCACAACATGGGCAGGAGATATGTTGAAGTGTTCAGAAGTAAAAGGCAGGAATATTACAAGGCAATAGCACAAGAAGTTTCTGATTCTCGTGGTGGTTCCCCTCGCAGAAATGCCCCAAGGGCCAAATCTTATGATGAAGGGAAGGACTCAGCGGAGCACACGGGGGTATTGCGGTTGAGGGGATTGCCATTTTCAGTTGGCAAGGATGATATAATGGATTTCTTTAAGGACTATGTGTTGTCTGAGAACTCAATTCATTTTACAATGAATTCGGAAGGGAGGCCCACTGGGGAAGGGTTTGTGGAGTTTGCAAGTGCGGAAGACTCCAAGGCAGCTATGGCCAAGGATAGGATGACGCTTGGAAGTCGATACATAGAGTTGTTCCCCTCCACGCATGATGAGTTGGATGAAGCAATATCAAGAGGACGGTGA

Protein Analysis

259

Amino Acids

29.05

Weight (kDa)

6.61

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 173 - 240 3e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 187
AciI CCGC 5 cut(s) 64, 158, 497, 517, 662
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 2 cut(s) 37, 684
AcsI RAATTY 2 cut(s) 17, 613
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 46, 693
AgsI TTSAA 2 cut(s) 335, 371
AjnI CCWGG 3 cut(s) 76, 103, 315
AluBI AGCT 2 cut(s) 178, 680
AluI AGCT 2 cut(s) 178, 680
Alw21I GWGCWC 1 cut(s) 504
AlwI GGATC 1 cut(s) 88
AoxI GGCC 4 cut(s) 37, 465, 626, 684
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 2 cut(s) 17, 613
AspS9I GGNCC 2 cut(s) 465, 627
AsuHPI GGTGA 1 cut(s) 44
BalI TGGCCA 1 cut(s) 686
BanII GRGCYC 1 cut(s) 53
BauI CACGAG 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 689
BccI CCATC 2 cut(s) 20, 29
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 3 cut(s) 78, 105, 317
BciVI GTATCC 1 cut(s) 318
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 7
BfuI GTATCC 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 2 cut(s) 65, 678
BlsI GCNGC 2 cut(s) 66, 679
Bme1390I CCNGG 3 cut(s) 78, 105, 317
BmgT120I GGNCC 2 cut(s) 465, 627
BmiI GGNNCC 2 cut(s) 97, 442
BmrFI CCNGG 3 cut(s) 78, 105, 317
BmrI ACTGGG 2 cut(s) 291, 642
BmuI ACTGGG 2 cut(s) 291, 642
BpiI GAAGAC 1 cut(s) 672
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 94
BsaJI CCNNGG 5 cut(s) 103, 229, 461, 672, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 693
Bse1I ACTGG 2 cut(s) 286, 637
BseBI CCWGG 3 cut(s) 78, 105, 317
BseDI CCNNGG 5 cut(s) 103, 229, 461, 672, 687
BseGI GGATG 3 cut(s) 556, 702, 757
BseLI CCNNNNNNNGG 2 cut(s) 46, 693
BseMII CTCAG 3 cut(s) 210, 507, 579
BseNI ACTGG 2 cut(s) 286, 637
BseXI GCAGC 1 cut(s) 689
BshFI GGCC 4 cut(s) 39, 467, 628, 686
BsiHKAI GWGCWC 1 cut(s) 504
BslI CCNNNNNNNGG 2 cut(s) 46, 693
BsnI GGCC 4 cut(s) 39, 467, 628, 686
Bsp1286I GDGCHC 2 cut(s) 53, 504
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 80
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 5 cut(s) 64, 158, 497, 517, 662
BspANI GGCC 4 cut(s) 39, 467, 628, 686
BspCNI CTCAG 3 cut(s) 211, 506, 580
BspLI GGNNCC 2 cut(s) 97, 442
BspPI GGATC 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 2 cut(s) 286, 637
BssECI CCNNGG 5 cut(s) 103, 229, 461, 672, 687
BssMI GATC 1 cut(s) 80
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 4 cut(s) 229, 461, 672, 687
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 78, 105, 317
Bst4CI ACNGT 1 cut(s) 774
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 219, 493, 588
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 3 cut(s) 556, 702, 757
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 4 cut(s) 64, 73, 464, 683
BstNI CCWGG 3 cut(s) 78, 105, 317
BstSCI CCNGG 3 cut(s) 76, 103, 315
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 689
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 4 cut(s) 39, 467, 628, 686
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 3 cut(s) 556, 702, 757
BtsIMutI CAGTG 2 cut(s) 279, 630
Cac8I GCNNGC 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 465, 627
CseI GACGC 2 cut(s) 47, 709
Csp6I GTAC 1 cut(s) 121
CviAII CATG 3 cut(s) 230, 352, 740
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 3 cut(s) 219, 493, 588
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EaeI YGGCCR 2 cut(s) 37, 684
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 4 cut(s) 229, 461, 672, 687
Eco24I GRGCYC 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 3 cut(s) 76, 103, 315
EcoT14I CCWWGG 4 cut(s) 229, 461, 672, 687
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 4 cut(s) 229, 461, 672, 687
FaeI CATG 3 cut(s) 233, 355, 743
FatI CATG 3 cut(s) 229, 351, 739
FauNDI CATATG 1 cut(s) 142
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 65, 678
FokI GGATG 3 cut(s) 563, 709, 764
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 65, 678
FspBI CTAG 1 cut(s) 68
GluI GCNGC 2 cut(s) 65, 678
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 4 cut(s) 39, 467, 628, 686
HgaI GACGC 2 cut(s) 47, 709
Hin1II CATG 3 cut(s) 233, 355, 743
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 3 cut(s) 428, 491, 668
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 188, 262, 279
Hpy188I TCNGA 5 cut(s) 25, 380, 427, 589, 619
Hpy188III TCNNGA 2 cut(s) 236, 765
Hpy8I GTNNAC 3 cut(s) 188, 262, 279
HpyAV CCTTC 5 cut(s) 341, 476, 481, 614, 632
HpyCH4III ACNGT 1 cut(s) 774
HpyCH4V TGCA 3 cut(s) 140, 201, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 73, 464, 683
HpyF3I CTNAG 3 cut(s) 219, 493, 588
Hsp92II CATG 3 cut(s) 233, 355, 743
Kzo9I GATC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 1 cut(s) 689
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 3 cut(s) 75, 217, 677
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 53, 504
MlsI TGGCCA 1 cut(s) 686
MluCI AATT 3 cut(s) 17, 597, 613
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 2 cut(s) 485, 662
MmeI TCCRAC 2 cut(s) 127, 729
MnlI CCTC 9 cut(s) 5, 109, 165, 321, 456, 516, 618, 742, 761
Mox20I TGGCCA 1 cut(s) 686
Mph1103I ATGCAT 1 cut(s) 142
MscI TGGCCA 1 cut(s) 686
MseI TTAA 2 cut(s) 174, 570
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 2 cut(s) 64, 497
MspR9I CCNGG 3 cut(s) 78, 105, 317
MvaI CCWGG 3 cut(s) 78, 105, 317
MwoI GCNNNNNNNGC 4 cut(s) 64, 73, 464, 683
NcoI CCATGG 1 cut(s) 229
NdeI CATATG 1 cut(s) 142
NdeII GATC 1 cut(s) 80
NlaIII CATG 3 cut(s) 233, 355, 743
NlaIV GGNNCC 2 cut(s) 97, 442
NsiI ATGCAT 1 cut(s) 142
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 2 cut(s) 66, 679
PleI GAGTC 2 cut(s) 485, 662
PpsI GAGTC 2 cut(s) 485, 662
Psp6I CCWGG 3 cut(s) 76, 103, 315
PspGI CCWGG 3 cut(s) 76, 103, 315
PspN4I GGNNCC 2 cut(s) 97, 442
PspPI GGNCC 2 cut(s) 465, 627
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 2 cut(s) 174, 570
SatI GCNGC 2 cut(s) 65, 678
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 2 cut(s) 465, 627
SchI GAGTC 2 cut(s) 485, 662
ScrFI CCNGG 3 cut(s) 78, 105, 317
SduI GDGCHC 2 cut(s) 53, 504
SetI ASST 5 cut(s) 16, 101, 180, 321, 682
SfcI CTRYAG 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 3 cut(s) 17, 597, 613
SsiI CCGC 5 cut(s) 64, 158, 497, 517, 662
SspI AATATT 1 cut(s) 398
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 3 cut(s) 76, 103, 315
StyI CCWWGG 4 cut(s) 229, 461, 672, 687
TaaI ACNGT 1 cut(s) 774
TaqI TCGA 1 cut(s) 712
TasI AATT 3 cut(s) 17, 597, 613
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 174, 570
Tru9I TTAA 2 cut(s) 174, 570
TscAI CASTG 2 cut(s) 286, 637
TseI GCWGC 1 cut(s) 677
TspDTI ATGAA 5 cut(s) 75, 495, 590, 626, 768
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 2 cut(s) 286, 637
XapI RAATTY 2 cut(s) 17, 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.