Rh5CG383000

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011351
Physical Location & Seq
Reverse (-)
50131904 .. 50134709
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG383000.1

Sequence Viewer

Length: 780 bp
ATGTTCTACAGAGGTGATGGCCGTGAAATGGGAGCAAAGCGTCAGCGGCTTGACCACCGTATTGACCACCGGCTTGACCAGGGATCTTCATTCTATGGGAGTTCCCCTGGTTCAAGTTATATGTTCAATCCGACTCCTTCTGCATATGCTGGACAGCCTCCACCTTTTCCTGTTGTCAAACTTCGTGGTCTTCCATTTGATTGCACAGAAGCTGATGTTGCTGAGTTCTTCCATGGTCTTGACATCGTTGATATTCTTTTTGTTCACAAGAATAGCAAGGTCACAGGGGAAGCCTATTGTGTTTTGGGATATCCCCTTCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAGAACATGGGGAGGAGATATGTTGAGGTGTTCAGAAGCAAGAGGCAGGAATATTACAAGGCAATAGCAAATGAAGTTTCTGATTCTCGTGGTGCTTCTCCTCGGAGAAATGTCCCAAGGGCTAAATCTTATGATGAAGGGAAGGACTCAGCAGAACATACAGGGGTATTGCGGTTGAGGGGATTGCCATTTTCAGCAGGCAAAGATGATATAATGGATTTTTTCAAGGATTTTGTGTTGTCAGAGGATTCGATTCATTTTACAATGAACTCAGAAGGGAGGCCAACTGGGGAAGCATTTGTGGAGTTTGCAAGTGCAGAAGATTCCAGAGCAGCTATGGCCAAGGATAGGATGACTCTTGGAAGTCGATATATAGAGTTGTTCCCCTCATCACATGAGGATTTGGATGAAGCAGTTTCAAAAGGACGATGA

Protein Analysis

259

Amino Acids

29.24

Weight (kDa)

6.4

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 174 - 241 1.3e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 46, 520
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 2 cut(s) 19, 687
AcuI CTGAAG 1 cut(s) 302
AfiI CCNNNNNNNGG 3 cut(s) 28, 339, 696
AgsI TTSAA 5 cut(s) 114, 127, 338, 574, 768
AjnI CCWGG 2 cut(s) 78, 106
AluBI AGCT 2 cut(s) 212, 683
AluI AGCT 2 cut(s) 212, 683
AlwI GGATC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 3 cut(s) 19, 629, 687
ApeKI GCWGC 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 26
BalI TGGCCA 1 cut(s) 689
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 692
BccI CCATC 1 cut(s) 11
BceAI ACGGC 1 cut(s) 6
BciT130I CCWGG 2 cut(s) 80, 108
BfmI CTRYAG 1 cut(s) 7
BisI GCNGC 2 cut(s) 47, 681
BlsI GCNGC 2 cut(s) 48, 682
Bme1390I CCNGG 2 cut(s) 80, 108
BmrFI CCNGG 2 cut(s) 80, 108
BmrI ACTGGG 1 cut(s) 645
BmuI ACTGGG 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 182
BsaJI CCNNGG 6 cut(s) 79, 106, 232, 449, 464, 690
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 339, 696
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 640
BseBI CCWGG 2 cut(s) 80, 108
BseDI CCNNGG 6 cut(s) 79, 106, 232, 449, 464, 690
BseGI GGATG 2 cut(s) 705, 760
BseLI CCNNNNNNNGG 3 cut(s) 28, 339, 696
BseMII CTCAG 3 cut(s) 213, 510, 633
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 2 cut(s) 376, 438
BseXI GCAGC 1 cut(s) 692
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 3 cut(s) 21, 631, 689
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 3 cut(s) 28, 339, 696
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 3 cut(s) 21, 631, 689
Bsp143I GATC 1 cut(s) 83
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 2 cut(s) 46, 520
BspANI GGCC 3 cut(s) 21, 631, 689
BspCNI CTCAG 3 cut(s) 214, 509, 632
BspPI GGATC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 69
BsrI ACTGG 1 cut(s) 640
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 6 cut(s) 79, 106, 232, 449, 464, 690
BssMI GATC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 3 cut(s) 232, 464, 690
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 80, 108
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 3 cut(s) 222, 496, 619
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 705, 760
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 3 cut(s) 46, 218, 686
BstNI CCWGG 2 cut(s) 80, 108
BstSCI CCNGG 2 cut(s) 78, 106
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 3 cut(s) 21, 631, 689
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 2 cut(s) 705, 760
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 69
CseI GACGC 1 cut(s) 29
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 3 cut(s) 233, 355, 743
DdeI CTNAG 3 cut(s) 222, 496, 619
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 2 cut(s) 19, 687
Eco130I CCWWGG 3 cut(s) 232, 464, 690
Eco32I GATATC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 78, 106
EcoRV GATATC 1 cut(s) 311
EcoT14I CCWWGG 3 cut(s) 232, 464, 690
ErhI CCWWGG 3 cut(s) 232, 464, 690
FaeI CATG 3 cut(s) 236, 358, 746
FaqI GGGAC 1 cut(s) 446
FatI CATG 3 cut(s) 232, 354, 742
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 47, 681
FokI GGATG 2 cut(s) 712, 767
Fsp4HI GCNGC 2 cut(s) 47, 681
GluI GCNGC 2 cut(s) 47, 681
HaeIII GGCC 3 cut(s) 21, 631, 689
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 236, 358, 746
HinfI GANTC 7 cut(s) 133, 431, 494, 596, 601, 671, 703
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 6 cut(s) 132, 383, 430, 453, 592, 622
Hpy188III TCNNGA 2 cut(s) 239, 675
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 6 cut(s) 147, 326, 344, 479, 484, 617
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 143, 204, 659, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 218, 686
HpyF3I CTNAG 3 cut(s) 222, 496, 619
Hsp92II CATG 3 cut(s) 236, 358, 746
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 692
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 4 cut(s) 78, 182, 220, 680
MflI RGATCY 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 689
MluNI TGGCCA 1 cut(s) 689
MlyI GAGTC 3 cut(s) 127, 488, 697
MmeI TCCRAC 1 cut(s) 155
Mox20I TGGCCA 1 cut(s) 689
MscI TGGCCA 1 cut(s) 689
Msp20I TGGCCA 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 2 cut(s) 80, 108
MvaI CCWGG 2 cut(s) 80, 108
MwoI GCNNNNNNNGC 3 cut(s) 46, 218, 686
NcoI CCATGG 1 cut(s) 232
NdeI CATATG 1 cut(s) 145
NdeII GATC 1 cut(s) 83
NlaIII CATG 3 cut(s) 236, 358, 746
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 4 cut(s) 431, 596, 601, 671
PkrI GCNGC 2 cut(s) 48, 682
PleI GAGTC 3 cut(s) 127, 488, 697
PpsI GAGTC 3 cut(s) 127, 488, 697
Psp6I CCWGG 2 cut(s) 78, 106
PspGI CCWGG 2 cut(s) 78, 106
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 83
SatI GCNGC 2 cut(s) 47, 681
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 3 cut(s) 127, 488, 697
ScrFI CCNGG 2 cut(s) 80, 108
SetI ASST 7 cut(s) 16, 166, 214, 282, 324, 378, 685
SfcI CTRYAG 1 cut(s) 7
SsiI CCGC 2 cut(s) 46, 520
SspI AATATT 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 78, 106
StyI CCWWGG 3 cut(s) 232, 464, 690
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 599, 715
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 4 cut(s) 431, 596, 601, 671
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 6 cut(s) 78, 435, 498, 593, 629, 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.