pycom11g16840

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011351
Physical Location & Seq
Reverse (-)
18670378 .. 18671545
1168 bp
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UTR
Exon/CDS
Intron
pycom11g16840.1

Sequence Viewer

Length: 825 bp
ATGAAAGTGCTCCGAGAATATATTACTGAGTATTCTAAATACTTGCTTATTAGTGTAGTTGTTAAATTTTCTGATGGCGGTGATGGCCGTGAAATGGGTTCAAAGCGTCAGCGGCTAGGCGAGCCAGGATCTTCATTCTATGGAACCTCCCCAGGCTCAAGTTATATGTACAATCCTACACCTTATGCATATGTTGGACAGCCTCCGCCTTTCCCTGTCGTCAAGCTCCGTGGTCTACCATTTGATTGCACGGAAGTTGATGTTGCTGAGTTCTTCCATGGTCTTGATGTTGTTGATGTTCTTTTTGTCCACAAGAATAGCAAGTTCACTGGGGAAGCATTTTGTGTTTTGGGGTATCCTCTACAGGTTGATTTTGCCCTTCAAAAGAATAGGCACAACATGGGCAGGAGATATGTTGAAGTGTTCAGAAGTAAAAGGCAGGAATATTACAAGGCAATAGCACAAGAAGTTTCTGATTCTCGTGGTGGTTCCCCTCGCAGAAATGCCCCAAGGGCCAAATCTTATGATGAAGGGAAGGACTCAGCGGAGCACACGGGGGTATTGCGGCTGAGGGGATTGCCATTTTCAGTTGGCAAGGATGATATAATGGATTTCTTTAAGGACTATGTGTTGTCTGAGAACTCAATTCATTTTACAATGAATTCGGAAGGGAGGCCCACTGGGGAAGGGTTTGTGGAGTTTGCAAGTGCGGAAGACTCCAAGGCAGCTATGGCCAAGGATAGGATGACGCTTGGAAGTCGATACATAGAGTTGTTCCCCTCCACGCATGATGAGTTGGATGAAGCAATATCAAGAGGACGGTGA

Protein Analysis

275

Amino Acids

30.89

Weight (kDa)

6.62

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 189 - 256 3.4e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AciI CCGC 6 cut(s) 78, 112, 206, 545, 565, 710
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 2 cut(s) 85, 732
AcsI RAATTY 2 cut(s) 65, 661
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 94, 741
AgsI TTSAA 3 cut(s) 102, 383, 419
AjnI CCWGG 2 cut(s) 124, 151
AluBI AGCT 2 cut(s) 226, 728
AluI AGCT 2 cut(s) 226, 728
Alw21I GWGCWC 2 cut(s) 12, 552
AlwI GGATC 1 cut(s) 136
AoxI GGCC 4 cut(s) 85, 513, 674, 732
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 2 cut(s) 65, 661
AspS9I GGNCC 2 cut(s) 513, 675
AsuHPI GGTGA 1 cut(s) 92
BalI TGGCCA 1 cut(s) 734
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 720
Bbv12I GWGCWC 2 cut(s) 12, 552
BbvCI CCTCAGC 1 cut(s) 569
BbvI GCAGC 1 cut(s) 737
BccI CCATC 2 cut(s) 68, 77
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 126, 153
BciVI GTATCC 1 cut(s) 366
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 362
BfuI GTATCC 1 cut(s) 366
BglI GCCNNNNNGGC 1 cut(s) 512
BisI GCNGC 3 cut(s) 113, 566, 726
BlsI GCNGC 3 cut(s) 114, 567, 727
Bme1390I CCNGG 2 cut(s) 126, 153
BmgT120I GGNCC 2 cut(s) 513, 675
BmiI GGNNCC 2 cut(s) 145, 490
BmrFI CCNGG 2 cut(s) 126, 153
BmrI ACTGGG 2 cut(s) 339, 690
BmuI ACTGGG 2 cut(s) 339, 690
BpiI GAAGAC 1 cut(s) 720
Bpu10I CCTNAGC 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 142
BsaJI CCNNGG 6 cut(s) 151, 229, 277, 509, 720, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 741
Bse1I ACTGG 2 cut(s) 334, 685
BseBI CCWGG 2 cut(s) 126, 153
BseDI CCNNGG 6 cut(s) 151, 229, 277, 509, 720, 735
BseGI GGATG 3 cut(s) 604, 750, 805
BseLI CCNNNNNNNGG 2 cut(s) 94, 741
BseMII CTCAG 5 cut(s) 18, 258, 555, 560, 627
BseNI ACTGG 2 cut(s) 334, 685
BseXI GCAGC 1 cut(s) 737
BshFI GGCC 4 cut(s) 87, 515, 676, 734
BsiHKAI GWGCWC 2 cut(s) 12, 552
BslI CCNNNNNNNGG 2 cut(s) 94, 741
BsnI GGCC 4 cut(s) 87, 515, 676, 734
Bsp1286I GDGCHC 2 cut(s) 12, 552
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 6 cut(s) 78, 112, 206, 545, 565, 710
BspANI GGCC 4 cut(s) 87, 515, 676, 734
BspCNI CTCAG 5 cut(s) 19, 259, 554, 561, 628
BspLI GGNNCC 2 cut(s) 145, 490
BspPI GGATC 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 2 cut(s) 334, 685
BssECI CCNNGG 6 cut(s) 151, 229, 277, 509, 720, 735
BssMI GATC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 4 cut(s) 277, 509, 720, 735
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 126, 153
Bst4CI ACNGT 1 cut(s) 822
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 5 cut(s) 27, 267, 541, 569, 636
BstDSI CCRYGG 2 cut(s) 229, 277
BstF5I GGATG 3 cut(s) 604, 750, 805
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 5 cut(s) 84, 112, 121, 512, 731
BstNI CCWGG 2 cut(s) 126, 153
BstSCI CCNGG 2 cut(s) 124, 151
BstSFI CTRYAG 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 737
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuI GTATCC 1 cut(s) 366
BsuRI GGCC 4 cut(s) 87, 515, 676, 734
BtgI CCRYGG 2 cut(s) 229, 277
BtsCI GGATG 3 cut(s) 604, 750, 805
BtsIMutI CAGTG 2 cut(s) 327, 678
Cac8I GCNNGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 513, 675
CseI GACGC 2 cut(s) 95, 757
Csp6I GTAC 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 3 cut(s) 278, 400, 788
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 5 cut(s) 27, 267, 541, 569, 636
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 85, 732
EciI GGCGGA 1 cut(s) 195
Eco130I CCWWGG 4 cut(s) 277, 509, 720, 735
EcoRI GAATTC 1 cut(s) 661
EcoRII CCWGG 2 cut(s) 124, 151
EcoT14I CCWWGG 4 cut(s) 277, 509, 720, 735
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 4 cut(s) 277, 509, 720, 735
FaeI CATG 3 cut(s) 281, 403, 791
FatI CATG 3 cut(s) 277, 399, 787
FauNDI CATATG 1 cut(s) 190
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 113, 566, 726
FokI GGATG 3 cut(s) 611, 757, 812
Fsp4HI GCNGC 3 cut(s) 113, 566, 726
FspBI CTAG 1 cut(s) 116
GluI GCNGC 3 cut(s) 113, 566, 726
HaeIII GGCC 4 cut(s) 87, 515, 676, 734
HgaI GACGC 2 cut(s) 95, 757
Hin1II CATG 3 cut(s) 281, 403, 791
HinfI GANTC 3 cut(s) 476, 539, 716
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 3 cut(s) 236, 310, 327
Hpy188I TCNGA 6 cut(s) 14, 73, 428, 475, 637, 667
Hpy188III TCNNGA 2 cut(s) 284, 813
Hpy8I GTNNAC 3 cut(s) 236, 310, 327
HpyAV CCTTC 5 cut(s) 389, 524, 529, 662, 680
HpyCH4III ACNGT 1 cut(s) 822
HpyCH4V TGCA 3 cut(s) 188, 249, 704
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 112, 121, 512, 731
HpyF3I CTNAG 5 cut(s) 27, 267, 541, 569, 636
Hsp92II CATG 3 cut(s) 281, 403, 791
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 3 cut(s) 15, 231, 547
Lsp1109I GCAGC 1 cut(s) 737
MaeI CTAG 1 cut(s) 116
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 3 cut(s) 123, 265, 725
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 12, 552
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 3 cut(s) 65, 645, 661
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 2 cut(s) 533, 710
MmeI TCCRAC 2 cut(s) 175, 777
MnlI CCTC 8 cut(s) 157, 213, 369, 504, 564, 666, 790, 809
Mox20I TGGCCA 1 cut(s) 734
Mph1103I ATGCAT 1 cut(s) 190
MscI TGGCCA 1 cut(s) 734
MseI TTAA 2 cut(s) 63, 618
Msp20I TGGCCA 1 cut(s) 734
MspA1I CMGCKG 2 cut(s) 112, 545
MspR9I CCNGG 2 cut(s) 126, 153
MvaI CCWGG 2 cut(s) 126, 153
MwoI GCNNNNNNNGC 5 cut(s) 84, 112, 121, 512, 731
NcoI CCATGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 190
NdeII GATC 1 cut(s) 128
NlaIII CATG 3 cut(s) 281, 403, 791
NlaIV GGNNCC 2 cut(s) 145, 490
NsiI ATGCAT 1 cut(s) 190
PfeI GAWTC 1 cut(s) 476
PkrI GCNGC 3 cut(s) 114, 567, 727
PleI GAGTC 2 cut(s) 533, 710
PpsI GAGTC 2 cut(s) 533, 710
Psp6I CCWGG 2 cut(s) 124, 151
PspGI CCWGG 2 cut(s) 124, 151
PspN4I GGNNCC 2 cut(s) 145, 490
PspPI GGNCC 2 cut(s) 513, 675
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 63, 618
SatI GCNGC 3 cut(s) 113, 566, 726
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 2 cut(s) 513, 675
SchI GAGTC 2 cut(s) 533, 710
ScrFI CCNGG 2 cut(s) 126, 153
SduI GDGCHC 2 cut(s) 12, 552
SetI ASST 5 cut(s) 149, 184, 228, 369, 730
SfcI CTRYAG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 3 cut(s) 65, 645, 661
SsiI CCGC 6 cut(s) 78, 112, 206, 545, 565, 710
SspI AATATT 1 cut(s) 446
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 124, 151
StyI CCWWGG 4 cut(s) 277, 509, 720, 735
TaaI ACNGT 1 cut(s) 822
TaqI TCGA 1 cut(s) 760
TasI AATT 3 cut(s) 65, 645, 661
TatI WGTACW 1 cut(s) 168
TauI GCSGC 2 cut(s) 115, 568
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 2 cut(s) 63, 618
Tru9I TTAA 2 cut(s) 63, 618
TscAI CASTG 2 cut(s) 334, 685
TseI GCWGC 1 cut(s) 725
TspDTI ATGAA 6 cut(s) 17, 123, 543, 638, 674, 816
TspGWI ACGGA 2 cut(s) 218, 266
TspRI CASTG 2 cut(s) 334, 685
XapI RAATTY 2 cut(s) 65, 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.