Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000098.1

Orthogroup ID

OG0011351

Physical Location & Seq

Genomic Coordinates Forward (+)

92074 .. 94892

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000098.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgttctacagaggtgatggccgtgaaatgggagcaaagcgtcagcggcttgaccaccgtattgaccaccggcttgaccagggatcttcattctatgggagttcccctggttcaagttatatgttcaatccgactccttctgcatatgctggacaacctccaccttttcctgttgtcaaacttcgtggtcttccatttgattgcacagaagctgatgttgctgagttcttccatggtcttgacatcgttgatattctttttgttcacaagaatagcaaggtcacaggggaagcctattgtgttttgggatatccccttcaggttgattttgcccttcaaaggaataggcagaacatggggaggagatatgttgaggtgttcagaagcaagaggcaggaatattacaaggcaatagcaaatgaagtttctgatcctcgtggtgcttctcctcgcagaaatgtcccaagggctaaatcttatgatgaagggaaggactcagcagaacatacaggggtattgcggttgaggggattgccattttcagcaggcaaagatgatataatggattttttcaaggattttgtgttgtcagaggactcgattcattttacaatgaactcagaagggaggccaactggggaagcatttgtggagtttgcaagtgcagaagattccagagcagctatggctaaggataggatgacccttggaagtcgatatatagagttgttcccctcatcacatgaggatttggatgaagcagtttcaaaaggacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0008150 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043484 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

29.25

Weight (kDa)

6.4

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20890
fragaria_vesca	FvH4_3g28820 FvH4_3g28820
malus_domestica	MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica	Prupe.4G249700_v2.0.a1
pyrus_communis	pycom03g13230 pycom11g16840
rosa_chinensis	RchiOBHm_Chr5g0052191
rosa_laevigata	RLG00000034838
rosa_multiflora	Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00028000
rosa_rugosa	Rorug05G0274300 Rorug05G0274400
rosa_samantha	Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana	Rw5G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	46, 520
AclWI	GGATC	2 cut(s)	91, 425
AcoI	YGGCCR	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	28, 339
AgsI	TTSAA	5 cut(s)	114, 127, 338, 574, 768
AjnI	CCWGG	2 cut(s)	78, 106
AluBI	AGCT	2 cut(s)	212, 683
AluI	AGCT	2 cut(s)	212, 683
AlwI	GGATC	2 cut(s)	91, 425
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	19, 629
ApeKI	GCWGC	1 cut(s)	680
AsuHPI	GGTGA	1 cut(s)	26
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	692
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	2 cut(s)	80, 108
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	2 cut(s)	47, 681
BlsI	GCNGC	2 cut(s)	48, 682
Bme1390I	CCNGG	2 cut(s)	80, 108
BmrFI	CCNGG	2 cut(s)	80, 108
BmrI	ACTGGG	1 cut(s)	645
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	690
BsaJI	CCNNGG	5 cut(s)	79, 106, 232, 464, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 339
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	80, 108
BseDI	CCNNGG	5 cut(s)	79, 106, 232, 464, 706
BseGI	GGATG	2 cut(s)	705, 760
BseLI	CCNNNNNNNGG	2 cut(s)	28, 339
BseMII	CTCAG	3 cut(s)	213, 510, 633
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	2 cut(s)	376, 438
BseXI	GCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	2 cut(s)	21, 631
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	28, 339
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	21, 631
Bsp143I	GATC	2 cut(s)	83, 430
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	2 cut(s)	46, 520
BspANI	GGCC	2 cut(s)	21, 631
BspCNI	CTCAG	3 cut(s)	214, 509, 632
BspPI	GGATC	2 cut(s)	91, 425
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	5 cut(s)	79, 106, 232, 464, 706
BssMI	GATC	2 cut(s)	83, 430
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	232, 464, 706
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	2 cut(s)	80, 108
Bst4CI	ACNGT	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	4 cut(s)	222, 496, 619, 690
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	705, 760
BstKTI	GATC	2 cut(s)	86, 433
BstMBI	GATC	2 cut(s)	83, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 218, 686
BstNI	CCWGG	2 cut(s)	80, 108
BstSCI	CCNGG	2 cut(s)	78, 106
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	692
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	21, 631
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	705, 760
Cac8I	GCNNGC	1 cut(s)	547
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	69
CseI	GACGC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	3 cut(s)	233, 355, 743
CviJI	RGCY	9 cut(s)	21, 49, 73, 212, 293, 470, 631, 683, 689
CviKI_1	RGCY	9 cut(s)	21, 49, 73, 212, 293, 470, 631, 683, 689
DdeI	CTNAG	4 cut(s)	222, 496, 619, 690
DpnI	GATC	2 cut(s)	85, 432
DpnII	GATC	2 cut(s)	83, 430
EaeI	YGGCCR	1 cut(s)	19
Eco130I	CCWWGG	3 cut(s)	232, 464, 706
Eco32I	GATATC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	78, 106
EcoRV	GATATC	1 cut(s)	311
EcoT14I	CCWWGG	3 cut(s)	232, 464, 706
ErhI	CCWWGG	3 cut(s)	232, 464, 706
FaeI	CATG	3 cut(s)	236, 358, 746
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	3 cut(s)	232, 354, 742
FauNDI	CATATG	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	47, 681
FokI	GGATG	2 cut(s)	712, 767
Fsp4HI	GCNGC	2 cut(s)	47, 681
GluI	GCNGC	2 cut(s)	47, 681
HaeIII	GGCC	2 cut(s)	21, 631
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	236, 358, 746
HinfI	GANTC	5 cut(s)	133, 494, 596, 601, 671
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	5 cut(s)	132, 383, 430, 592, 622
Hpy188III	TCNNGA	2 cut(s)	239, 675
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	6 cut(s)	147, 326, 344, 479, 484, 617
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	143, 204, 659, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 218, 686
HpyF3I	CTNAG	4 cut(s)	222, 496, 619, 690
Hsp92II	CATG	3 cut(s)	236, 358, 746
Kzo9I	GATC	2 cut(s)	83, 430
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	692
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	85, 432
MboI	GATC	2 cut(s)	83, 430
MboII	GAAGA	4 cut(s)	78, 182, 220, 680
MflI	RGATCY	1 cut(s)	83
MlyI	GAGTC	3 cut(s)	127, 488, 590
MmeI	TCCRAC	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	80, 108
MvaI	CCWGG	2 cut(s)	80, 108
MwoI	GCNNNNNNNGC	3 cut(s)	46, 218, 686
NcoI	CCATGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	2 cut(s)	83, 430
NlaIII	CATG	3 cut(s)	236, 358, 746
NmuCI	GTSAC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	601, 671
PkrI	GCNGC	2 cut(s)	48, 682
PleI	GAGTC	3 cut(s)	127, 488, 590
PpsI	GAGTC	3 cut(s)	127, 488, 590
Psp6I	CCWGG	2 cut(s)	78, 106
PspGI	CCWGG	2 cut(s)	78, 106
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	83
SatI	GCNGC	2 cut(s)	47, 681
Sau3AI	GATC	2 cut(s)	83, 430
SchI	GAGTC	3 cut(s)	127, 488, 590
ScrFI	CCNGG	2 cut(s)	80, 108
SetI	ASST	8 cut(s)	16, 160, 166, 214, 282, 324, 378, 685
SfcI	CTRYAG	1 cut(s)	7
SsiI	CCGC	2 cut(s)	46, 520
SspI	AATATT	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	78, 106
StyI	CCWWGG	3 cut(s)	232, 464, 706
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	599, 715
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	601, 671
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	6 cut(s)	78, 435, 498, 593, 629, 771
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.