Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011351

Physical Location & Seq

Genomic Coordinates Forward (+)

31009733 .. 31010857

Gene Structure 1125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0274400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCAGACCACCTTCCTGAGGGAACCATACATGAAATCCTTAAAAGGTTGCCCATAAAATCTGTAATCCGTTGCTGCTTAGTGTGTAGGTCATGGAAATCTCTGATCGAAAGCTCTACCCACCTCAGCCGCAAAGTCCAATCCAACAACCAAAACGACCCTCACTTCCTTCTAGTAAACCCTCCGCTCAACTGGTGTCTTTGGGACGTTGGTGACTATATCAACATCGAAAATCCTTACCTTTACCTTACAGAATCAATTTTCCCCAAAGGTGAAAGACTTGTAGTCAAGAATTTCAATGTGGTGGGAACTTGTAACGGGCTAGTGTGCTTTGCTTTTGACTTTGCCTATTATGGCTCCATAGCAGTAATTTGGAACCCTTGTATCAGAAAGTATGTGACTTTGCCTAAGCGTCGTGTTTCAAACCCTAAGGGTGGCAGTGACTTTAACGTAGCAAGTTATGCTTTTGGCTATGATTCGCGGACCAAGGACTACAAGGTTTTGAGAACTGTCAGTGATTTTGGTGGCGAAACAGAGATTTGGTCCTTGGCTACGGGCAACTGGAAAATCCTTCGTGCTCCTATGCCAAAGGATTTTCCGCGTCACGGTGATAATGTCAGATATGCTTATGTCAATGGTGCAGTGCATTGGGTGCATCACCGTCGTAGGGGTCGAAGGCATAAGGCCATTGTGGATACTGCTATTGTGTTGTTTGATATGGCCAGTGAGTTATTTCGCGAGATGATGATGATGCCAGAAGATTTGAGAGGAAAGCATTGCCATATTTCAAGATACATGGAGTCCATTGGTTTATTTACGGGGACAGATTTGGAGAGTTTCGGTACTATTGATGTCGACATGTGGGTGATGAGAGATTATGGAGCTGTGGAATCCTGGACAAAATTATTTACCATACGTCTGGAAGGACCTCAGCTACAGCCATTTGGTTTTAAAAAGAATGGTAGTGAAGCAGTGTTCAAAATGAGTGGTGGACGGTTACTAACAGTGGATCTTAAGACAAAGAAAGTTGGAGAATTTGCAATCAATAATGAATACGAGTACTACGGCTTCTTGGACTGCTTTGCAGAGAGCCTTGCCTTACTTGGCCATGCTAAATCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0008150 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043484 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

374

Amino Acids

42.92

Weight (kDa)

8.82

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 45	3.6e-08	F-box-like
F-box	PF00646	4 - 39	6e-10	F-box domain
FBA_1	PF07734	77 - 322	3e-20	F-box associated beta propeller domain
FBA_3	PF08268	99 - 302	7.7e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20890
fragaria_vesca	FvH4_3g28820 FvH4_3g28820
malus_domestica	MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica	Prupe.4G249700_v2.0.a1
pyrus_communis	pycom03g13230 pycom11g16840
rosa_chinensis	RchiOBHm_Chr5g0052191
rosa_laevigata	RLG00000034838
rosa_multiflora	Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00028000
rosa_rugosa	Rorug05G0274300 Rorug05G0274400
rosa_samantha	Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana	Rw5G032760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	855
AccII	CGCG	3 cut(s)	481, 601, 738
AciI	CCGC	4 cut(s)	130, 185, 481, 599
AclWI	GGATC	1 cut(s)	1017
AcoI	YGGCCR	2 cut(s)	720, 1105
AcsI	RAATTY	2 cut(s)	292, 1034
AfaI	GTAC	2 cut(s)	844, 1061
AfiI	CCNNNNNNNGG	4 cut(s)	19, 434, 605, 667
AflII	CTTAAG	1 cut(s)	1013
AflIII	ACRYGT	1 cut(s)	858
AgsI	TTSAA	4 cut(s)	298, 423, 789, 979
AhdI	GACNNNNNGTC	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	893
AluBI	AGCT	3 cut(s)	114, 884, 934
AluI	AGCT	3 cut(s)	114, 884, 934
Alw21I	GWGCWC	1 cut(s)	580
AlwI	GGATC	1 cut(s)	1017
AoxI	GGCC	3 cut(s)	684, 720, 1105
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	2 cut(s)	292, 1034
AspS9I	GGNCC	3 cut(s)	483, 543, 926
AsuHPI	GGTGA	5 cut(s)	224, 284, 620, 650, 877
AvaII	GGWCC	3 cut(s)	483, 543, 926
AxyI	CCTNAGG	2 cut(s)	18, 429
BaeI	ACNNNNGTAYC	2 cut(s)	367, 400
BalI	TGGCCA	2 cut(s)	722, 1107
BarI	GAAGNNNNNNTAC	2 cut(s)	1052, 1084
Bbv12I	GWGCWC	1 cut(s)	580
BbvCI	CCTCAGC	2 cut(s)	125, 930
BbvI	GCAGC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	1081
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	1 cut(s)	895
BciVI	GTATCC	1 cut(s)	688
BfaI	CTAG	2 cut(s)	173, 323
BfmI	CTRYAG	1 cut(s)	935
BfrI	CTTAAG	1 cut(s)	1013
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	2 cut(s)	76, 130
BlsI	GCNGC	2 cut(s)	77, 131
BmcAI	AGTACT	1 cut(s)	1061
Bme1390I	CCNGG	1 cut(s)	895
Bme18I	GGWCC	3 cut(s)	483, 543, 926
BmeRI	GACNNNNNGTC	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	483, 543, 926
BmiI	GGNNCC	3 cut(s)	25, 358, 377
BmrFI	CCNGG	1 cut(s)	895
BmsI	GCATC	2 cut(s)	664, 741
Bpu10I	CCTNAGC	3 cut(s)	125, 408, 930
BsaJI	CCNNGG	2 cut(s)	486, 546
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 434, 605, 667
Bse1I	ACTGG	3 cut(s)	197, 566, 723
Bse21I	CCTNAGG	2 cut(s)	18, 429
Bse3DI	GCAATG	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	895
BseDI	CCNNGG	2 cut(s)	486, 546
BseLI	CCNNNNNNNGG	4 cut(s)	19, 434, 605, 667
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	3 cut(s)	9, 139, 944
BseNI	ACTGG	3 cut(s)	197, 566, 723
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	3 cut(s)	481, 601, 738
BshFI	GGCC	3 cut(s)	686, 722, 1107
BsiHKAI	GWGCWC	1 cut(s)	580
BslFI	GGGAC	2 cut(s)	218, 835
BslI	CCNNNNNNNGG	4 cut(s)	19, 434, 605, 667
BsmFI	GGGAC	2 cut(s)	218, 835
BsnI	GGCC	3 cut(s)	686, 722, 1107
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	2 cut(s)	105, 1009
Bsp68I	TCGCGA	1 cut(s)	738
BspACI	CCGC	4 cut(s)	130, 185, 481, 599
BspANI	GGCC	3 cut(s)	686, 722, 1107
BspCNI	CTCAG	3 cut(s)	10, 138, 943
BspFNI	CGCG	3 cut(s)	481, 601, 738
BspLI	GGNNCC	3 cut(s)	25, 358, 377
BspPI	GGATC	1 cut(s)	1017
BspTI	CTTAAG	1 cut(s)	1013
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	775
BsrI	ACTGG	3 cut(s)	197, 566, 723
BssECI	CCNNGG	2 cut(s)	486, 546
BssMI	GATC	2 cut(s)	105, 1009
BssT1I	CCWWGG	2 cut(s)	486, 546
Bst2UI	CCWGG	1 cut(s)	895
Bst4CI	ACNGT	5 cut(s)	511, 608, 662, 996, 1006
BstAFI	CTTAAG	1 cut(s)	1013
BstAPI	GCANNNNNTGC	2 cut(s)	461, 652
BstDEI	CTNAG	6 cut(s)	18, 79, 125, 408, 429, 930
BstENI	CCTNNNNNAGG	1 cut(s)	17
BstFNI	CGCG	3 cut(s)	481, 601, 738
BstKTI	GATC	2 cut(s)	108, 1012
BstMBI	GATC	2 cut(s)	105, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 652
BstNI	CCWGG	1 cut(s)	895
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	1 cut(s)	893
BstSFI	CTRYAG	1 cut(s)	935
BstUI	CGCG	3 cut(s)	481, 601, 738
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	1009
BstXI	CCANNNNNNTGG	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	1009
Bsu36I	CCTNAGG	2 cut(s)	18, 429
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	686, 722, 1107
BtsI	GCAGTG	3 cut(s)	445, 648, 978
BtsIMutI	CAGTG	6 cut(s)	445, 520, 648, 730, 978, 1011
BtuMI	TCGCGA	1 cut(s)	738
Cfr13I	GGNCC	3 cut(s)	483, 543, 926
CseI	GACGC	2 cut(s)	401, 590
Csp6I	GTAC	2 cut(s)	843, 1060
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviAII	CATG	5 cut(s)	32, 93, 796, 859, 1109
CviQI	GTAC	2 cut(s)	843, 1060
DdeI	CTNAG	6 cut(s)	18, 79, 125, 408, 429, 930
DpnI	GATC	2 cut(s)	107, 1011
DpnII	GATC	2 cut(s)	105, 1009
DraI	TTTAAA	1 cut(s)	952
DriI	GACNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	2 cut(s)	720, 1105
Eam1105I	GACNNNNNGTC	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	486, 546
Eco47I	GGWCC	3 cut(s)	483, 543, 926
Eco81I	CCTNAGG	2 cut(s)	18, 429
EcoNI	CCTNNNNNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	926
EcoRII	CCWGG	1 cut(s)	893
EcoT14I	CCWWGG	2 cut(s)	486, 546
ErhI	CCWWGG	2 cut(s)	486, 546
FaeI	CATG	5 cut(s)	35, 96, 799, 862, 1112
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	2 cut(s)	218, 835
FatI	CATG	5 cut(s)	31, 92, 795, 858, 1108
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	2 cut(s)	76, 130
Fsp4HI	GCNGC	2 cut(s)	76, 130
FspBI	CTAG	2 cut(s)	173, 323
GluI	GCNGC	2 cut(s)	76, 130
HaeIII	GGCC	3 cut(s)	686, 722, 1107
HgaI	GACGC	2 cut(s)	401, 590
Hin1II	CATG	5 cut(s)	35, 96, 799, 862, 1112
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	4 cut(s)	254, 476, 800, 890
HphI	GGTGA	5 cut(s)	224, 284, 620, 650, 877
Hpy166II	GTNNAC	3 cut(s)	178, 856, 992
Hpy188I	TCNGA	4 cut(s)	7, 105, 389, 620
Hpy188III	TCNNGA	5 cut(s)	17, 289, 737, 789, 920
Hpy8I	GTNNAC	3 cut(s)	178, 856, 992
Hpy99I	CGWCG	2 cut(s)	417, 666
HpyAV	CCTTC	5 cut(s)	23, 179, 581, 669, 917
HpyCH4III	ACNGT	5 cut(s)	511, 608, 662, 996, 1006
HpyCH4IV	ACGT	3 cut(s)	207, 450, 916
HpyCH4V	TGCA	5 cut(s)	641, 646, 655, 1040, 1085
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 652
HpyF3I	CTNAG	6 cut(s)	18, 79, 125, 408, 429, 930
HpySE526I	ACGT	3 cut(s)	207, 450, 916
Hsp92II	CATG	5 cut(s)	35, 96, 799, 862, 1112
Kzo9I	GATC	2 cut(s)	105, 1009
LmnI	GCTCC	3 cut(s)	362, 583, 881
LpnPI	CCDG	8 cut(s)	30, 178, 547, 736, 768, 880, 905, 907
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	664, 741
MaeI	CTAG	2 cut(s)	173, 323
MaeII	ACGT	3 cut(s)	207, 450, 916
MaeIII	GTNAC	6 cut(s)	212, 314, 397, 440, 602, 996
MalI	GATC	2 cut(s)	107, 1011
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	2 cut(s)	105, 1009
MboII	GAAGA	1 cut(s)	770
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	1 cut(s)	580
MlsI	TGGCCA	2 cut(s)	722, 1107
MluCI	AATT	5 cut(s)	258, 292, 369, 902, 1034
MluNI	TGGCCA	2 cut(s)	722, 1107
MlyI	GAGTC	1 cut(s)	809
MmeI	TCCRAC	2 cut(s)	168, 1009
MnlI	CCTC	6 cut(s)	13, 134, 171, 192, 761, 939
Mox20I	TGGCCA	2 cut(s)	722, 1107
MscI	TGGCCA	2 cut(s)	722, 1107
MseI	TTAA	5 cut(s)	42, 447, 951, 1014, 1123
MslI	CAYNNNNRTG	1 cut(s)	863
Msp20I	TGGCCA	2 cut(s)	722, 1107
MspCI	CTTAAG	1 cut(s)	1013
MspR9I	CCNGG	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	895
MvnI	CGCG	3 cut(s)	481, 601, 738
MwoI	GCNNNNNNNGC	2 cut(s)	461, 652
NdeII	GATC	2 cut(s)	105, 1009
NlaIII	CATG	5 cut(s)	35, 96, 799, 862, 1112
NlaIV	GGNNCC	3 cut(s)	25, 358, 377
NmuCI	GTSAC	4 cut(s)	212, 397, 440, 602
NruI	TCGCGA	1 cut(s)	738
NspI	RCATGY	1 cut(s)	862
PciI	ACATGT	1 cut(s)	858
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	254, 476, 890
PfoI	TCCNGGA	1 cut(s)	893
PkrI	GCNGC	2 cut(s)	77, 131
PleI	GAGTC	1 cut(s)	808
PpsI	GAGTC	1 cut(s)	808
PpuMI	RGGWCCY	1 cut(s)	926
PscI	ACATGT	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	926
Psp6I	CCWGG	1 cut(s)	893
PspGI	CCWGG	1 cut(s)	893
PspN4I	GGNNCC	3 cut(s)	25, 358, 377
PspPI	GGNCC	3 cut(s)	483, 543, 926
PspPPI	RGGWCCY	1 cut(s)	926
PsuI	RGATCY	1 cut(s)	1009
RruI	TCGCGA	1 cut(s)	738
RsaI	GTAC	2 cut(s)	844, 1061
RsaNI	GTAC	2 cut(s)	843, 1060
RseI	CAYNNNNRTG	1 cut(s)	863
SalI	GTCGAC	1 cut(s)	854
SaqAI	TTAA	5 cut(s)	42, 447, 951, 1014, 1123
SatI	GCNGC	2 cut(s)	76, 130
Sau3AI	GATC	2 cut(s)	105, 1009
Sau96I	GGNCC	3 cut(s)	483, 543, 926
ScaI	AGTACT	1 cut(s)	1061
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	1 cut(s)	895
SduI	GDGCHC	1 cut(s)	580
SfaNI	GCATC	2 cut(s)	664, 741
SfcI	CTRYAG	1 cut(s)	935
SinI	GGWCC	3 cut(s)	483, 543, 926
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	5 cut(s)	258, 292, 369, 902, 1034
SsiI	CCGC	4 cut(s)	130, 185, 481, 599
SspMI	CTAG	2 cut(s)	173, 323
StyD4I	CCNGG	1 cut(s)	893
StyI	CCWWGG	2 cut(s)	486, 546
TaaI	ACNGT	5 cut(s)	511, 608, 662, 996, 1006
TaiI	ACGT	3 cut(s)	210, 453, 919
TaqI	TCGA	4 cut(s)	108, 228, 673, 855
TasI	AATT	5 cut(s)	258, 292, 369, 902, 1034
TatI	WGTACW	1 cut(s)	1059
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	254, 476, 890
Tru1I	TTAA	5 cut(s)	42, 447, 951, 1014, 1123
Tru9I	TTAA	5 cut(s)	42, 447, 951, 1014, 1123
TscAI	CASTG	6 cut(s)	445, 520, 648, 730, 978, 1011
TseFI	GTSAC	4 cut(s)	212, 397, 440, 602
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	4 cut(s)	212, 397, 440, 602
TspDTI	ATGAA	2 cut(s)	48, 1065
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	6 cut(s)	445, 520, 648, 730, 978, 1011
Vha464I	CTTAAG	1 cut(s)	1013
VpaK11BI	GGWCC	3 cut(s)	483, 543, 926
XagI	CCTNNNNNAGG	1 cut(s)	17
XapI	RAATTY	2 cut(s)	292, 1034
XceI	RCATGY	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	855
XspI	CTAG	2 cut(s)	173, 323
ZrmI	AGTACT	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.