FvH4_3g29220
NAC Family

Inactive beta-amylase 4

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
22355669 .. 22360161
4493 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29220.t1

Sequence Viewer

Length: 1551 bp
ATGGCAATGGCTGAGAATGGTGGAGTTGTCTGCAAATGCTCACCCAGAAGGAGCTTCCGCTTCCGCTTCAGACAACCCAATCTCCGAAACGTTTCCAGCATTCCTCTCTTCAAACACGCCCTCTTCACTCGCTCCCCATCTCTCGCCGGAAAAGCTTCTACCATACTCAGCATGAGTGCACAAAAGAAACCGAGGCCTTCGATACTGTCGTCTTCGAGACATAAGAGAATTCCCATTTATGTGATGATGCCTGTTGATGCATTCTGCATAGATGGTTCTGGGATTCCAAGGATTAGGAGAGTCAAGGCCTTGACAGTATCTTTGAAAGCGCTCAAGCTGGCAGGTGTCCATGGAGTTGCAGTTGAGGTTTGGTGGGGAGTCGTAGAACGTTTCTCTCCCCTTGCATATGACTGGTCTCTATATGAACAGCTATTTAAGCTGATTTCTGAGTCAGGGTTGAAGGTGCATGTTGCCTTGTCTTTTCACTCAAATGTAAACTCTTCTTCTAGCAGATATGTGGGTGTAAGTCTTCCACTTTGGATCATGCAGATTGGTGCTAGCAATAAGCATATATTCTATCGAGACAAAAATGGGTTTTCAAGTGATGATTATCTTACGCTAGGGGTTGATCACCTTCCTCTGTTTTGTGGCCGGACTGCCCTTCAATGTTATGAAGATTTTATGACCAGCTTTGTTAAGAAATTTGAATCCCATATTGGAAGTGTGATAGAGGAAATTTGTGTCGGTCTTGGTCCTTCTGGCGAACTTAGGTATCCTGCACACTTTGGTGATGGTAAATGGAAGTTCCCTGGAATTGGCGAGTTCCAGTGCTATGACCAGTACATGCTGGACAACCTAAAGATGGCCGCATGTGAGGAAGGGAAGCCTCAATGGGGAGAAAGGGGACCACCAAATGCAGGCTGTTATAATAGTATGCCATCTGGAGTTCCTTTCTTTGAAGAGGGAGAGGAAAACTTTCTTTCTGATTATGGGTGCTTTTTCCTTGAATGGTATAGTGGTTGTTTGCTTGGTCATGCAGATGCTATTCTTGCAAAGGCAGCCAAAATTTTGAAAAAGTATCAAGAAGACAAGCAAGCTTCTATTCTGTTAGTGGCTAAAATTGGTGGAATATATTGGTGGTACCAGACAGTAGCACACCCTGCTGAACTCACAGCTGGATACTACAACACTGCTCTTAGGGATGGTTATGATCCTGTTGCTTCACTTTTGTCTCGTCATGGAGCTGCTTTGCATGTTTCCTGCTTGGAGATGATGGACAGTGAATCACCAGCATCCTATCTTTGCAGCCCAGAAGGATTACGGCAACAGATATGGAGTGCTTCAAAGAAAAGGATAATACATTTGACTGGAAGAAACACCAATGAACGATGTGACAAGGTTAGTTTATGGCAAATACATGCCAACTGTTACCATTCACAGGCGGAAGCTGTAAGATCATTTACTTATTTCAGGATGAATGATAAGATCTTTAGGGCCGAAAACTGGAGTAACTTTGTTCCTTTTGTTAGAAAGATGAGCACAAGTTGGTGA

Protein Analysis

517

Amino Acids

58.16

Weight (kDa)

8.99

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 81 - 508 2.7e-104 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 927
AarI CACCTGC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 332
Acc65I GGTACC 1 cut(s) 1140
AccB1I GGYRCC 1 cut(s) 1140
AciI CCGC 4 cut(s) 58, 64, 867, 1442
AclI AACGTT 2 cut(s) 90, 388
AclWI GGATC 2 cut(s) 548, 1205
AcoI YGGCCR 2 cut(s) 649, 864
AcsI RAATTY 4 cut(s) 228, 701, 735, 1065
AcuI CTGAAG 1 cut(s) 52
AfaI GTAC 2 cut(s) 842, 1142
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 6 cut(s) 815, 862, 893, 917, 1438, 1503
AjnI CCWGG 1 cut(s) 808
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AleI CACNNNNGTG 1 cut(s) 786
Alw21I GWGCWC 2 cut(s) 181, 1541
Alw26I GTCTC 4 cut(s) 211, 420, 576, 1236
Alw44I GTGCAC 1 cut(s) 177
AlwI GGATC 2 cut(s) 548, 1205
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 5 cut(s) 194, 306, 649, 864, 1494
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 1058, 1244, 1305
ApoI RAATTY 4 cut(s) 228, 701, 735, 1065
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
Asp700I GAANNNNTTC 3 cut(s) 91, 154, 975
Asp718I GGTACC 1 cut(s) 1140
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 3 cut(s) 752, 905, 1494
AsuHPI GGTGA 4 cut(s) 33, 623, 800, 1278
AsuNHI GCTAGC 1 cut(s) 557
AvaII GGWCC 2 cut(s) 752, 905
BaeGI GKGCMC 1 cut(s) 181
BaeI ACNNNNGTAYC 4 cut(s) 194, 227, 755, 788
BanI GGYRCC 1 cut(s) 1140
BbsI GAAGAC 3 cut(s) 204, 521, 1092
Bbv12I GWGCWC 2 cut(s) 181, 1541
BbvI GCAGC 3 cut(s) 1070, 1231, 1317
BccI CCATC 7 cut(s) 145, 266, 785, 856, 946, 1196, 1267
BceAI ACGGC 1 cut(s) 1337
BciT130I CCWGG 1 cut(s) 810
BciVI GTATCC 2 cut(s) 783, 1172
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 4 cut(s) 211, 420, 576, 1236
BfaI CTAG 3 cut(s) 507, 558, 620
BfoI RGCGCY 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 332
BfuI GTATCC 2 cut(s) 783, 1172
BglII AGATCT 1 cut(s) 1485
BisI GCNGC 4 cut(s) 867, 1059, 1245, 1306
BlsI GCNGC 4 cut(s) 868, 1060, 1246, 1307
Bme1390I CCNGG 1 cut(s) 810
Bme18I GGWCC 2 cut(s) 752, 905
BmgT120I GGNCC 3 cut(s) 752, 905, 1494
BmiI GGNNCC 2 cut(s) 906, 1142
BmrFI CCNGG 1 cut(s) 810
BmsI GCATC 4 cut(s) 237, 247, 1030, 1301
BmtI GCTAGC 1 cut(s) 561
BpiI GAAGAC 3 cut(s) 204, 521, 1092
BpmI CTGGAG 2 cut(s) 963, 1525
BpuEI CTTGAG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 4 cut(s) 191, 287, 349, 808
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 345, 375
Bsc4I CCNNNNNNNGG 6 cut(s) 815, 862, 893, 917, 1438, 1503
Bse1I ACTGG 5 cut(s) 416, 826, 838, 1372, 1508
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 4 cut(s) 191, 287, 349, 808
BseGI GGATG 3 cut(s) 1207, 1292, 1479
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 6 cut(s) 815, 862, 893, 917, 1438, 1503
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 181, 438
BseNI ACTGG 5 cut(s) 416, 826, 838, 1372, 1508
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 3 cut(s) 1070, 1231, 1317
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 5 cut(s) 196, 308, 651, 866, 1496
BshNI GGYRCC 1 cut(s) 1140
BsiHKAI GWGCWC 2 cut(s) 181, 1541
BsiSI CCGG 2 cut(s) 147, 652
BslFI GGGAC 1 cut(s) 918
BslI CCNNNNNNNGG 6 cut(s) 815, 862, 893, 917, 1438, 1503
BsmAI GTCTC 4 cut(s) 211, 420, 576, 1236
BsmFI GGGAC 1 cut(s) 918
BsmI GAATGC 2 cut(s) 99, 260
BsnI GGCC 5 cut(s) 196, 308, 651, 866, 1496
Bso31I GGTCTC 1 cut(s) 420
Bsp1286I GDGCHC 2 cut(s) 181, 1541
Bsp143I GATC 5 cut(s) 540, 628, 1210, 1454, 1485
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 4 cut(s) 58, 64, 867, 1442
BspANI GGCC 5 cut(s) 196, 308, 651, 866, 1496
BspCNI CTCAG 3 cut(s) 4, 180, 439
BspLI GGNNCC 2 cut(s) 906, 1142
BspMI ACCTGC 1 cut(s) 332
BspOI GCTAGC 1 cut(s) 561
BspPI GGATC 2 cut(s) 548, 1205
BspT107I GGYRCC 1 cut(s) 1140
BspTNI GGTCTC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 5 cut(s) 416, 826, 838, 1372, 1508
BssECI CCNNGG 4 cut(s) 191, 287, 349, 808
BssMI GATC 5 cut(s) 540, 628, 1210, 1454, 1485
BssT1I CCWWGG 2 cut(s) 287, 349
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 5 cut(s) 207, 316, 1150, 1280, 1427
Bst6I CTCTTC 4 cut(s) 113, 128, 505, 954
BstAPI GCANNNNNTGC 1 cut(s) 1160
BstC8I GCNNGC 4 cut(s) 339, 559, 919, 1095
BstDEI CTNAG 5 cut(s) 12, 167, 447, 767, 1196
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 3 cut(s) 1207, 1292, 1479
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 5 cut(s) 543, 631, 1213, 1457, 1488
BstMAI GTCTC 4 cut(s) 211, 420, 576, 1236
BstMBI GATC 5 cut(s) 540, 628, 1210, 1454, 1485
BstMWI GCNNNNNNNGC 5 cut(s) 152, 436, 1049, 1058, 1160
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 5 cut(s) 470, 847, 873, 1256, 1421
BstSCI CCNGG 1 cut(s) 808
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 3 cut(s) 1070, 1231, 1317
BstV2I GAAGAC 3 cut(s) 204, 521, 1092
BstX2I RGATCY 1 cut(s) 1485
BstYI RGATCY 1 cut(s) 1485
BsuI GTATCC 2 cut(s) 783, 1172
BsuRI GGCC 5 cut(s) 196, 308, 651, 866, 1496
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 3 cut(s) 1207, 1292, 1479
BtsI GCAGTG 1 cut(s) 1188
BtsIMutI CAGTG 3 cut(s) 833, 1188, 1285
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 4 cut(s) 339, 559, 919, 1095
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 752, 905, 1494
Csp6I GTAC 2 cut(s) 841, 1141
CviQI GTAC 2 cut(s) 841, 1141
DdeI CTNAG 5 cut(s) 12, 167, 447, 767, 1196
DpnI GATC 5 cut(s) 542, 630, 1212, 1456, 1487
DpnII GATC 5 cut(s) 540, 628, 1210, 1454, 1485
EaeI YGGCCR 2 cut(s) 649, 864
Eam1104I CTCTTC 4 cut(s) 113, 128, 505, 954
EarI CTCTTC 4 cut(s) 113, 128, 505, 954
EciI GGCGGA 1 cut(s) 1457
Eco130I CCWWGG 2 cut(s) 287, 349
Eco147I AGGCCT 2 cut(s) 196, 308
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 752, 905
Eco47III AGCGCT 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 808
EcoT14I CCWWGG 2 cut(s) 287, 349
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 2 cut(s) 287, 349
FaqI GGGAC 1 cut(s) 918
FauNDI CATATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 4 cut(s) 867, 1059, 1245, 1306
FokI GGATG 3 cut(s) 1214, 1279, 1486
Fsp4HI GCNGC 4 cut(s) 867, 1059, 1245, 1306
FspBI CTAG 3 cut(s) 507, 558, 620
GlaI GCGC 1 cut(s) 330
GluI GCNGC 4 cut(s) 867, 1059, 1245, 1306
GsuI CTGGAG 2 cut(s) 963, 1525
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 5 cut(s) 196, 308, 651, 866, 1496
HapII CCGG 2 cut(s) 147, 652
HhaI GCGC 1 cut(s) 331
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HindIII AAGCTT 2 cut(s) 153, 1095
HinfI GANTC 6 cut(s) 283, 300, 378, 449, 707, 1283
HpaII CCGG 2 cut(s) 147, 652
HphI GGTGA 4 cut(s) 33, 623, 800, 1278
Hpy166II GTNNAC 2 cut(s) 179, 496
Hpy188I TCNGA 4 cut(s) 71, 86, 448, 985
Hpy188III TCNNGA 5 cut(s) 216, 581, 942, 1082, 1471
Hpy8I GTNNAC 2 cut(s) 179, 496
HpyAV CCTTC 8 cut(s) 42, 207, 454, 644, 671, 765, 872, 1307
HpyCH4III ACNGT 5 cut(s) 207, 316, 1150, 1280, 1427
HpyCH4IV ACGT 2 cut(s) 90, 388
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 436, 1049, 1058, 1160
HpyF3I CTNAG 5 cut(s) 12, 167, 447, 767, 1196
HpySE526I ACGT 2 cut(s) 90, 388
HspAI GCGC 1 cut(s) 329
KpnI GGTACC 1 cut(s) 1144
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 5 cut(s) 540, 628, 1210, 1454, 1485
LmnI GCTCC 3 cut(s) 51, 137, 1241
Lsp1109I GCAGC 3 cut(s) 1070, 1231, 1317
LweI GCATC 4 cut(s) 237, 247, 1030, 1301
MaeI CTAG 3 cut(s) 507, 558, 620
MaeII ACGT 2 cut(s) 90, 388
MaeIII GTNAC 3 cut(s) 1391, 1427, 1508
MalI GATC 5 cut(s) 542, 630, 1212, 1456, 1487
MboI GATC 5 cut(s) 540, 628, 1210, 1454, 1485
MflI RGATCY 1 cut(s) 1485
MhlI GDGCHC 2 cut(s) 181, 1541
MluCI AATT 6 cut(s) 228, 701, 735, 813, 1065, 1119
MlyI GAGTC 3 cut(s) 309, 387, 458
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 3 cut(s) 91, 154, 975
MseI TTAA 2 cut(s) 435, 696
MslI CAYNNNNRTG 4 cut(s) 239, 489, 786, 1038
MspA1I CMGCKG 1 cut(s) 1175
MspI CCGG 2 cut(s) 147, 652
MspR9I CCNGG 1 cut(s) 810
Mva1269I GAATGC 2 cut(s) 99, 260
MvaI CCWGG 1 cut(s) 810
MwoI GCNNNNNNNGC 5 cut(s) 152, 436, 1049, 1058, 1160
NcoI CCATGG 1 cut(s) 349
NdeI CATATG 1 cut(s) 406
NdeII GATC 5 cut(s) 540, 628, 1210, 1454, 1485
NheI GCTAGC 1 cut(s) 557
NlaIV GGNNCC 2 cut(s) 906, 1142
NmuCI GTSAC 1 cut(s) 1391
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 5 cut(s) 470, 847, 873, 1256, 1421
OliI CACNNNNGTG 1 cut(s) 786
PaqCI CACCTGC 1 cut(s) 332
PceI AGGCCT 2 cut(s) 196, 308
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PctI GAATGC 2 cut(s) 99, 260
PdmI GAANNNNTTC 3 cut(s) 91, 154, 975
PfeI GAWTC 3 cut(s) 283, 707, 1283
PkrI GCNGC 4 cut(s) 868, 1060, 1246, 1307
PleI GAGTC 3 cut(s) 308, 386, 457
PpsI GAGTC 3 cut(s) 308, 386, 457
PsiI TTATAA 1 cut(s) 927
Psp1406I AACGTT 2 cut(s) 90, 388
Psp6I CCWGG 1 cut(s) 808
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 2 cut(s) 906, 1142
PspPI GGNCC 3 cut(s) 752, 905, 1494
PsuI RGATCY 1 cut(s) 1485
PvuII CAGCTG 1 cut(s) 1175
RsaI GTAC 2 cut(s) 842, 1142
RsaNI GTAC 2 cut(s) 841, 1141
RseI CAYNNNNRTG 4 cut(s) 239, 489, 786, 1038
SaqAI TTAA 2 cut(s) 435, 696
SatI GCNGC 4 cut(s) 867, 1059, 1245, 1306
Sau3AI GATC 5 cut(s) 540, 628, 1210, 1454, 1485
Sau96I GGNCC 3 cut(s) 752, 905, 1494
SchI GAGTC 3 cut(s) 309, 387, 458
ScrFI CCNGG 1 cut(s) 810
SduI GDGCHC 2 cut(s) 181, 1541
SfaNI GCATC 4 cut(s) 237, 247, 1030, 1301
SinI GGWCC 2 cut(s) 752, 905
SmiMI CAYNNNNRTG 4 cut(s) 239, 489, 786, 1038
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 6 cut(s) 228, 701, 735, 813, 1065, 1119
SseBI AGGCCT 2 cut(s) 196, 308
SsiI CCGC 4 cut(s) 58, 64, 867, 1442
SspMI CTAG 3 cut(s) 507, 558, 620
StuI AGGCCT 2 cut(s) 196, 308
StyD4I CCNGG 1 cut(s) 808
StyI CCWWGG 2 cut(s) 287, 349
TaaI ACNGT 5 cut(s) 207, 316, 1150, 1280, 1427
TaiI ACGT 2 cut(s) 93, 391
TaqI TCGA 3 cut(s) 200, 215, 580
TaqII GACCGA 1 cut(s) 734
TasI AATT 6 cut(s) 228, 701, 735, 813, 1065, 1119
TatI WGTACW 1 cut(s) 840
TauI GCSGC 1 cut(s) 869
TfiI GAWTC 3 cut(s) 283, 707, 1283
Tru1I TTAA 2 cut(s) 435, 696
Tru9I TTAA 2 cut(s) 435, 696
TscAI CASTG 3 cut(s) 833, 1195, 1285
TseFI GTSAC 1 cut(s) 1391
TseI GCWGC 3 cut(s) 1058, 1244, 1305
Tsp45I GTSAC 1 cut(s) 1391
TspDTI ATGAA 4 cut(s) 438, 687, 1398, 1490
TspRI CASTG 3 cut(s) 833, 1195, 1285
VneI GTGCAC 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 752, 905
XapI RAATTY 4 cut(s) 228, 701, 735, 1065
XceI RCATGY 5 cut(s) 470, 847, 873, 1256, 1421
XmnI GAANNNNTTC 3 cut(s) 91, 154, 975
XspI CTAG 3 cut(s) 507, 558, 620
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.