Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039621.1

Orthogroup ID

OG0008239

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1476

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039621.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcaatggctgagaatggtggagtagtctgcaaatgcacagccaggaggagtttccgcttcaggcaacccaagcactccaatctccgaaacctttccagaattcctctcttcactcgccgcccatctcttgccggaaaactcacccttctcagcacgagtgcacaagagaaatcaaggcctgcggtattgtcatctacgagacataagagaattcccatatatgtgatgatgcctgttgatgcattctgcatagatggttttgggattccaaggattaggagactcaaggccttaactgcatctctaaaagcactcaagttggcaggtgtccatggaattgcagttgaggtttggtggggaatcgtagaacgtttctctccccttgcatatgactggtctctatatgaaaagctatttgagctgatttctgagtcagggttaaaggtgcatgttgccttgtcttttcactcaaatgtaaactcttcttcttgcagaaatgggggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

169

Amino Acids

18.86

Weight (kDa)

10.62

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55700 AT5G55700
fragaria_vesca	FvH4_3g29220 FvH4_3g29220 FvH4_3g29220 FvH4_3g29220
malus_domestica	MD11G1199700.v1.1 MD11G1199800.v1.1
prunus_persica	Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1
pyrus_communis	pycom11g17260
rosa_chinensis	RchiOBHm_Chr5g0053641 RchiOBHm_Chr5g0053651
rosa_multiflora	Rmu_co8304649.1_g000001 Rmu_sc0032104.1_g000001 Rmu_sc0039621.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026910
rosa_rugosa	Rorug05G0280700
rosa_samantha	Rh5CG388600
rosa_wichuraiana	Rw5G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	317
AciI	CCGC	3 cut(s)	58, 121, 185
AclI	AACGTT	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	102, 213
AcuI	CTGAAG	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	415, 424
AluI	AGCT	2 cut(s)	415, 424
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	3 cut(s)	196, 277, 405
Alw44I	GTGCAC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	179, 291
ApaLI	GTGCAC	1 cut(s)	162
ApoI	RAATTY	2 cut(s)	102, 213
Asp700I	GAANNNNTTC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	166
BccI	CCATC	2 cut(s)	133, 251
BciT130I	CCWGG	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	196, 277, 405
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	3 cut(s)	222, 232, 311
BpuEI	CTTGAG	2 cut(s)	272, 302
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	272, 334
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	272, 334
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	166, 423
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	166
BshFI	GGCC	2 cut(s)	181, 293
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	3 cut(s)	196, 277, 405
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	181, 293
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	3 cut(s)	58, 121, 185
BspANI	GGCC	2 cut(s)	181, 293
BspCNI	CTCAG	3 cut(s)	4, 165, 424
BspMI	ACCTGC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	272, 334
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	2 cut(s)	272, 334
Bst2BI	CACGAG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	116, 490
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	12, 152, 432
BstDSI	CCRYGG	1 cut(s)	334
BstMAI	GTCTC	3 cut(s)	196, 277, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 299, 421
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	181, 293
BtgI	CCRYGG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	183
CviAII	CATG	2 cut(s)	335, 452
CviJI	RGCY	6 cut(s)	11, 44, 181, 293, 415, 424
CviKI_1	RGCY	6 cut(s)	11, 44, 181, 293, 415, 424
DdeI	CTNAG	3 cut(s)	12, 152, 432
Eam1104I	CTCTTC	2 cut(s)	116, 490
EarI	CTCTTC	2 cut(s)	116, 490
Eco130I	CCWWGG	2 cut(s)	272, 334
Eco147I	AGGCCT	2 cut(s)	181, 293
Eco31I	GGTCTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	46
EcoRI	GAATTC	2 cut(s)	102, 213
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	2 cut(s)	272, 334
EcoT22I	ATGCAT	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	272, 334
FaeI	CATG	2 cut(s)	338, 455
FatI	CATG	2 cut(s)	334, 451
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	181, 293
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	2 cut(s)	338, 455
HinfI	GANTC	4 cut(s)	268, 285, 363, 434
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	164, 481
Hpy188I	TCNGA	2 cut(s)	89, 433
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	2 cut(s)	164, 481
HpyAV	CCTTC	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 299, 421
HpyF3I	CTNAG	3 cut(s)	12, 152, 432
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	338, 455
LweI	GCATC	3 cut(s)	222, 232, 311
MaeII	ACGT	1 cut(s)	373
MboII	GAAGA	3 cut(s)	103, 477, 480
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	3 cut(s)	102, 213, 339
MlyI	GAGTC	2 cut(s)	279, 443
MnlI	CCTC	3 cut(s)	42, 117, 343
Mph1103I	ATGCAT	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	2 cut(s)	296, 443
MslI	CAYNNNNRTG	2 cut(s)	224, 474
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	46
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	73, 299, 421
NcoI	CCATGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	391
NlaIII	CATG	2 cut(s)	338, 455
NsiI	ATGCAT	1 cut(s)	247
NspI	RCATGY	1 cut(s)	455
PaqCI	CACCTGC	1 cut(s)	317
PceI	AGGCCT	2 cut(s)	181, 293
PctI	GAATGC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	268, 363
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	2 cut(s)	279, 442
PpsI	GAGTC	2 cut(s)	279, 442
Psp1406I	AACGTT	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
RseI	CAYNNNNRTG	2 cut(s)	224, 474
SaqAI	TTAA	2 cut(s)	296, 443
SatI	GCNGC	1 cut(s)	121
SchI	GAGTC	2 cut(s)	279, 443
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	7 cut(s)	96, 331, 354, 376, 417, 426, 450
SfaNI	GCATC	3 cut(s)	222, 232, 311
SmiMI	CAYNNNNRTG	2 cut(s)	224, 474
SmlI	CTYRAG	2 cut(s)	287, 317
SmoI	CTYRAG	2 cut(s)	287, 317
Sse9I	AATT	3 cut(s)	102, 213, 339
SseBI	AGGCCT	2 cut(s)	181, 293
SsiI	CCGC	3 cut(s)	58, 121, 185
StuI	AGGCCT	2 cut(s)	181, 293
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	2 cut(s)	272, 334
TaiI	ACGT	1 cut(s)	376
TasI	AATT	3 cut(s)	102, 213, 339
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	268, 363
Tru1I	TTAA	2 cut(s)	296, 443
Tru9I	TTAA	2 cut(s)	296, 443
TspDTI	ATGAA	1 cut(s)	423
VneI	GTGCAC	1 cut(s)	162
XapI	RAATTY	2 cut(s)	102, 213
XceI	RCATGY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.