Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304649.1

Orthogroup ID

OG0008239

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 900

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

aacctttccagaattcctctcttcactcgccgcccatctcttgccggaaaactcacccttctcagcacgagtgcacaagagaaatcaaggcctgcggtattgtcatctacgagacataagagaattcccatatatgtgatgatgcctgttgatgcattctgcatagatggttttgggattccaaggattaggagactcaaggccttaactgcatctctaaaagcactcaagttggcaggtgtccatggaattgcagttgaggtttggtggggaatcgtagaacgtttctctccccttgcatatgactggtctctatatgaaaagctatttgagctgatttctgagtcagggttaaaggtgcatgttgccttgtcttttcactcaaatgtaaactcttcttcttgcagaaatgggggtgtaagtcttccgctttggatcacacaggtttgttactttgctattctgatttcatgcaaatcattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

161

Amino Acids

17.9

Weight (kDa)

9.97

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55700 AT5G55700
fragaria_vesca	FvH4_3g29220 FvH4_3g29220 FvH4_3g29220 FvH4_3g29220
malus_domestica	MD11G1199700.v1.1 MD11G1199800.v1.1
prunus_persica	Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1
pyrus_communis	pycom11g17260
rosa_chinensis	RchiOBHm_Chr5g0053641 RchiOBHm_Chr5g0053651
rosa_multiflora	Rmu_co8304649.1_g000001 Rmu_sc0032104.1_g000001 Rmu_sc0039621.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026910
rosa_rugosa	Rorug05G0280700
rosa_samantha	Rh5CG388600
rosa_wichuraiana	Rw5G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AciI	CCGC	3 cut(s)	31, 95, 428
AclI	AACGTT	1 cut(s)	283
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	2 cut(s)	12, 123
AluBI	AGCT	2 cut(s)	325, 334
AluI	AGCT	2 cut(s)	325, 334
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	3 cut(s)	106, 187, 315
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	2 cut(s)	89, 201
ApaLI	GTGCAC	1 cut(s)	72
ApoI	RAATTY	2 cut(s)	12, 123
AsuHPI	GGTGA	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	2 cut(s)	43, 161
BcoDI	GTCTC	3 cut(s)	106, 187, 315
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
BmsI	GCATC	3 cut(s)	132, 142, 221
BpiI	GAAGAC	1 cut(s)	416
BpuEI	CTTGAG	2 cut(s)	182, 212
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	182, 244
Bse1I	ACTGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	182, 244
BseMII	CTCAG	2 cut(s)	76, 333
BseNI	ACTGG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	76
BshFI	GGCC	2 cut(s)	91, 203
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	45
BsmAI	GTCTC	3 cut(s)	106, 187, 315
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	91, 203
Bso31I	GGTCTC	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	3 cut(s)	31, 95, 428
BspANI	GGCC	2 cut(s)	91, 203
BspCNI	CTCAG	2 cut(s)	75, 334
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	182, 244
BssMI	GATC	1 cut(s)	435
BssSI	CACGAG	1 cut(s)	67
BssT1I	CCWWGG	2 cut(s)	182, 244
Bst2BI	CACGAG	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	26, 400
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	62, 342
BstDSI	CCRYGG	1 cut(s)	244
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	3 cut(s)	106, 187, 315
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 331
BstNSI	RCATGY	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	91, 203
BtgI	CCRYGG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	93
CviAII	CATG	3 cut(s)	245, 362, 471
CviJI	RGCY	4 cut(s)	91, 203, 325, 334
CviKI_1	RGCY	4 cut(s)	91, 203, 325, 334
DdeI	CTNAG	2 cut(s)	62, 342
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	26, 400
EarI	CTCTTC	2 cut(s)	26, 400
Eco130I	CCWWGG	2 cut(s)	182, 244
Eco147I	AGGCCT	2 cut(s)	91, 203
Eco31I	GGTCTC	1 cut(s)	315
EcoRI	GAATTC	2 cut(s)	12, 123
EcoT14I	CCWWGG	2 cut(s)	182, 244
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	182, 244
FaeI	CATG	3 cut(s)	248, 365, 474
FatI	CATG	3 cut(s)	244, 361, 470
FauNDI	CATATG	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	91, 203
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	3 cut(s)	248, 365, 474
HinfI	GANTC	4 cut(s)	178, 195, 273, 344
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	74, 391
Hpy188I	TCNGA	2 cut(s)	343, 465
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	2 cut(s)	74, 391
HpyAV	CCTTC	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	9 cut(s)	74, 155, 162, 212, 254, 299, 361, 405, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 331
HpyF3I	CTNAG	2 cut(s)	62, 342
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	3 cut(s)	248, 365, 474
Kzo9I	GATC	1 cut(s)	435
LpnPI	CCDG	8 cut(s)	22, 58, 105, 159, 222, 292, 333, 428
LweI	GCATC	3 cut(s)	132, 142, 221
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	4 cut(s)	13, 387, 390, 416
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	12, 123, 249
MlyI	GAGTC	2 cut(s)	189, 353
MnlI	CCTC	2 cut(s)	27, 253
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	2 cut(s)	206, 353
MslI	CAYNNNNRTG	2 cut(s)	134, 384
MspI	CCGG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	209, 331
NcoI	CCATGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	3 cut(s)	248, 365, 474
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	365
PaqCI	CACCTGC	1 cut(s)	227
PceI	AGGCCT	2 cut(s)	91, 203
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	178, 273
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	2 cut(s)	189, 352
PpsI	GAGTC	2 cut(s)	189, 352
Psp1406I	AACGTT	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	134, 384
SaqAI	TTAA	2 cut(s)	206, 353
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	435
SchI	GAGTC	2 cut(s)	189, 353
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	8 cut(s)	6, 241, 264, 286, 327, 336, 360, 447
SfaNI	GCATC	3 cut(s)	132, 142, 221
SmiMI	CAYNNNNRTG	2 cut(s)	134, 384
SmlI	CTYRAG	2 cut(s)	197, 227
SmoI	CTYRAG	2 cut(s)	197, 227
Sse9I	AATT	3 cut(s)	12, 123, 249
SseBI	AGGCCT	2 cut(s)	91, 203
SsiI	CCGC	3 cut(s)	31, 95, 428
StuI	AGGCCT	2 cut(s)	91, 203
StyI	CCWWGG	2 cut(s)	182, 244
TaiI	ACGT	1 cut(s)	286
TasI	AATT	3 cut(s)	12, 123, 249
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	178, 273
Tru1I	TTAA	2 cut(s)	206, 353
Tru9I	TTAA	2 cut(s)	206, 353
TspDTI	ATGAA	2 cut(s)	333, 459
VneI	GTGCAC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	12, 123
XceI	RCATGY	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.