Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008239

Physical Location & Seq

Genomic Coordinates Forward (+)

31904996 .. 31905983

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0280700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAGCGTTTTTACATGACCCTCGGACACAAATTAGTATCCGGACCTAAAAAACTTTTGAGGATACCTACTAATGGGCGTGTCATCGGTCTTGATCTCAGCACCGAATCTATCTCAAGTGGCGTTGACAATTCCAGCAGTCTCTTCGATCTTCAAGATCTTCAAAGCCTTAATTTGGCCTACAATTATGACTTCAGTGGCTCTCAGATCCCAACTGCCATTGGAAAGCTCACAAACTTGAGGTATCTAAACTTATCTCACAATTCTTACTTCGGGCAAATTCCCATTGAGATTTCATACTTGACAAGGTTGGTTATCTTTGATATTTCTGGCAATTTCTTCTCAACCGATCAGTTAAAACTTGAGAACCCAAATTTAACCAAGCTAGTTCAGAACCTCACAGAGCTAACAGAGTTGTATCTTGATGATGTCAATATATCAGCACAGGGCAGTGACTGGTCCCAAGCAATATCTTTACTGCCAAACATGAGGGTGCTGAGCTTGTATGCTTGTGATCTTTCAGGCCCTATTCATGACTCATTTGCTAAGCTTCATTCTCTATCTGTGATTATATTGGATCATAACCAAATCTCTGCTCCAGTTCCAGGATTCTTTGCCAATTTTTCAAACTTGACTTACTTAAGTCTTGTTGATTGTGGGTTGCAAGGAACATTTCCCAAAGAGATATTCCAGTTATCTACATTACAGAGTATTGACCTGACATTAAATCCACAGCTTCAAGGTTCCTTGCCAGAGTTACCCGAAAATGGATCTCTTCAGTCATTGGTTCTAAGCCAGACAAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

269

Amino Acids

29.75

Weight (kDa)

4.98

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	39 - 261	4.1e-11	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55700 AT5G55700
fragaria_vesca	FvH4_3g29220 FvH4_3g29220 FvH4_3g29220 FvH4_3g29220
malus_domestica	MD11G1199700.v1.1 MD11G1199800.v1.1
prunus_persica	Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1
pyrus_communis	pycom11g17260
rosa_chinensis	RchiOBHm_Chr5g0053641 RchiOBHm_Chr5g0053651
rosa_multiflora	Rmu_co8304649.1_g000001 Rmu_sc0032104.1_g000001 Rmu_sc0039621.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026910
rosa_rugosa	Rorug05G0280700
rosa_samantha	Rh5CG388600
rosa_wichuraiana	Rw5G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	41
AclWI	GGATC	3 cut(s)	202, 585, 778
AcsI	RAATTY	3 cut(s)	279, 373, 802
AcuI	CTGAAG	2 cut(s)	178, 761
AfiI	CCNNNNNNNGG	4 cut(s)	74, 175, 605, 767
AflII	CTTAAG	1 cut(s)	640
AgsI	TTSAA	4 cut(s)	155, 164, 627, 740
AjnI	CCWGG	1 cut(s)	604
AjuI	GAANNNNNNNTTGG	2 cut(s)	671, 703
AluBI	AGCT	6 cut(s)	229, 385, 406, 501, 550, 736
AluI	AGCT	6 cut(s)	229, 385, 406, 501, 550, 736
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	202, 585, 778
AlwNI	CAGNNNCTG	1 cut(s)	456
Aor13HI	TCCGGA	1 cut(s)	41
AoxI	GGCC	2 cut(s)	177, 523
ApoI	RAATTY	3 cut(s)	279, 373, 802
AspS9I	GGNCC	3 cut(s)	44, 459, 524
AvaII	GGWCC	2 cut(s)	44, 459
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	606
BciVI	GTATCC	2 cut(s)	49, 57
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	640
BfuI	GTATCC	2 cut(s)	49, 57
BglII	AGATCT	1 cut(s)	157
BlpI	GCTNAGC	2 cut(s)	497, 546
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	2 cut(s)	44, 459
BmgT120I	GGNCC	3 cut(s)	44, 459, 524
BmiI	GGNNCC	2 cut(s)	461, 745
BmrFI	CCNGG	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	582
Bpu1102I	GCTNAGC	2 cut(s)	497, 546
BpuEI	CTTGAG	3 cut(s)	100, 259, 383
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 175, 605, 767
Bse1I	ACTGG	3 cut(s)	461, 599, 691
BseAI	TCCGGA	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	4 cut(s)	74, 175, 605, 767
BseMII	CTCAG	3 cut(s)	112, 218, 488
BseNI	ACTGG	3 cut(s)	461, 599, 691
BshFI	GGCC	2 cut(s)	179, 525
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	4 cut(s)	74, 175, 605, 767
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	179, 525
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	8 cut(s)	94, 148, 157, 207, 349, 514, 577, 770
Bsp1720I	GCTNAGC	2 cut(s)	497, 546
BspANI	GGCC	2 cut(s)	179, 525
BspCNI	CTCAG	3 cut(s)	111, 217, 489
BspEI	TCCGGA	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	461, 745
BspPI	GGATC	3 cut(s)	202, 585, 778
BspTI	CTTAAG	1 cut(s)	640
BsrI	ACTGG	3 cut(s)	461, 599, 691
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	8 cut(s)	94, 148, 157, 207, 349, 514, 577, 770
Bst2UI	CCWGG	1 cut(s)	606
Bst6I	CTCTTC	2 cut(s)	149, 780
BstAFI	CTTAAG	1 cut(s)	640
BstDEI	CTNAG	5 cut(s)	98, 204, 497, 546, 791
BstKTI	GATC	8 cut(s)	97, 151, 160, 210, 352, 517, 580, 773
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	8 cut(s)	94, 148, 157, 207, 349, 514, 577, 770
BstNI	CCWGG	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	604
BstX2I	RGATCY	3 cut(s)	157, 207, 770
BstYI	RGATCY	3 cut(s)	157, 207, 770
BsuI	GTATCC	2 cut(s)	49, 57
BsuRI	GGCC	2 cut(s)	179, 525
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	202, 457
CaiI	CAGNNNCTG	1 cut(s)	456
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	44, 459, 524
CviAII	CATG	3 cut(s)	16, 487, 533
DdeI	CTNAG	5 cut(s)	98, 204, 497, 546, 791
DpnI	GATC	8 cut(s)	96, 150, 159, 209, 351, 516, 579, 772
DpnII	GATC	8 cut(s)	94, 148, 157, 207, 349, 514, 577, 770
Eam1104I	CTCTTC	2 cut(s)	149, 780
EarI	CTCTTC	2 cut(s)	149, 780
Eco47I	GGWCC	2 cut(s)	44, 459
Eco57I	CTGAAG	2 cut(s)	178, 761
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	604
FaeI	CATG	3 cut(s)	19, 490, 536
FaiI	YATR	9 cut(s)	17, 189, 298, 437, 488, 507, 534, 572, 582
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	15, 486, 532
FspBI	CTAG	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	179, 525
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	3 cut(s)	19, 490, 536
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	3 cut(s)	107, 536, 609
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	3 cut(s)	26, 207, 393
Hpy188III	TCNNGA	5 cut(s)	42, 92, 155, 422, 533
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	664
HpyF3I	CTNAG	5 cut(s)	98, 204, 497, 546, 791
Hsp92II	CATG	3 cut(s)	19, 490, 536
Kpn2I	TCCGGA	1 cut(s)	41
Kzo9I	GATC	8 cut(s)	94, 148, 157, 207, 349, 514, 577, 770
LmnI	GCTCC	1 cut(s)	601
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	2 cut(s)	452, 756
MalI	GATC	8 cut(s)	96, 150, 159, 209, 351, 516, 579, 772
MboI	GATC	8 cut(s)	94, 148, 157, 207, 349, 514, 577, 770
MboII	GAAGA	5 cut(s)	136, 143, 152, 331, 767
MflI	RGATCY	3 cut(s)	157, 207, 770
MlyI	GAGTC	1 cut(s)	530
MnlI	CCTC	5 cut(s)	32, 54, 234, 407, 483
MroI	TCCGGA	1 cut(s)	41
MseI	TTAA	5 cut(s)	171, 356, 377, 641, 725
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	640
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
NdeII	GATC	8 cut(s)	94, 148, 157, 207, 349, 514, 577, 770
NlaIII	CATG	3 cut(s)	19, 490, 536
NlaIV	GGNNCC	2 cut(s)	461, 745
NmuCI	GTSAC	1 cut(s)	452
PagI	TCATGA	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	107, 609
PfoI	TCCNGGA	1 cut(s)	604
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	461, 745
PspPI	GGNCC	3 cut(s)	44, 459, 524
PstNI	CAGNNNCTG	1 cut(s)	456
PsuI	RGATCY	3 cut(s)	157, 207, 770
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	5 cut(s)	171, 356, 377, 641, 725
Sau3AI	GATC	8 cut(s)	94, 148, 157, 207, 349, 514, 577, 770
Sau96I	GGNCC	3 cut(s)	44, 459, 524
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	606
SinI	GGWCC	2 cut(s)	44, 459
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	4 cut(s)	115, 238, 362, 640
SmoI	CTYRAG	4 cut(s)	115, 238, 362, 640
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	604
TaqI	TCGA	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	107, 609
Tru1I	TTAA	5 cut(s)	171, 356, 377, 641, 725
Tru9I	TTAA	5 cut(s)	171, 356, 377, 641, 725
TscAI	CASTG	2 cut(s)	202, 457
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	4 cut(s)	17, 285, 521, 542
TspRI	CASTG	2 cut(s)	202, 457
Vha464I	CTTAAG	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	44, 459
XapI	RAATTY	3 cut(s)	279, 373, 802
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.