Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008239

Physical Location & Seq

Genomic Coordinates Reverse (-)

56031856 .. 56034292

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAATGGTATAGTGGTAGTTTGCTTGGTCATGCAGATGCTATTCTTGCAAAGGCAGCCAAAATTTTGAAGAAGTATCAAGAAGACAAGCAAACTTCTATTCTGTTAGTGGCTAAAATTGGTGGAATATATTGGTGGTACCAGACAGTAGCACACCCTGCTGAACTCACAGCTGGATACTACAACACTGCTCTGAGGGATGGTTATGATCCTGTTGCTTCAATTTTTTCTCGTCATGGAGCTGCTTTGCATGTGTCCTGCTTGGAAATGATGGATGGTGAAACACCAGAATCCTATCTCTGCAGCCCAGAAGGATTACTGCAACAGTTATGGAGTGTTTCGAAGAAAAGGATAATACATTTGATCGGGAGAAACACCAACGAACGATTTGACAGGGTTAGTTTATGGCAAATACATGACAACTGTTACCATTCACAGGCGGAAGTTGTAAGATCATTTACTTATTTCAGGATGAATGATAAGATCTTTAGGGCTGAAAACTGGAGTAACTTCGTTCCTTTTGTTAAAAAAATGAGCACAAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

182

Amino Acids

21.0

Weight (kDa)

8.38

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 174	2.1e-35	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55700 AT5G55700
fragaria_vesca	FvH4_3g29220 FvH4_3g29220 FvH4_3g29220 FvH4_3g29220
malus_domestica	MD11G1199700.v1.1 MD11G1199800.v1.1
prunus_persica	Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1
pyrus_communis	pycom11g17260
rosa_chinensis	RchiOBHm_Chr5g0053641 RchiOBHm_Chr5g0053651
rosa_multiflora	Rmu_co8304649.1_g000001 Rmu_sc0032104.1_g000001 Rmu_sc0039621.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026910
rosa_rugosa	Rorug05G0280700
rosa_samantha	Rh5CG388600
rosa_wichuraiana	Rw5G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	63
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	70, 222
AluBI	AGCT	2 cut(s)	173, 242
AluI	AGCT	2 cut(s)	173, 242
Alw21I	GWGCWC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	203
ApeKI	GCWGC	3 cut(s)	56, 242, 303
ApoI	RAATTY	1 cut(s)	63
Asp718I	GGTACC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	3 cut(s)	68, 229, 315
BccI	CCATC	3 cut(s)	194, 265, 269
BciVI	GTATCC	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	3 cut(s)	57, 243, 304
BlsI	GCNGC	3 cut(s)	58, 244, 305
BmiI	GGNNCC	1 cut(s)	140
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	523
Bpu14I	TTCGAA	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	506
BseGI	GGATG	3 cut(s)	205, 280, 477
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	68, 229, 315
BshNI	GGYRCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	208, 363, 452, 483
BspACI	CCGC	1 cut(s)	440
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	140
BspMAI	CTGCAG	1 cut(s)	305
BspPI	GGATC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	506
BssMI	GATC	4 cut(s)	208, 363, 452, 483
Bst4CI	ACNGT	3 cut(s)	148, 327, 425
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	3 cut(s)	205, 280, 477
BstKTI	GATC	4 cut(s)	211, 366, 455, 486
BstMBI	GATC	4 cut(s)	208, 363, 452, 483
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 158
BstNSI	RCATGY	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	68, 229, 315
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	205, 280, 477
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	4 cut(s)	32, 236, 251, 416
CviJI	RGCY	6 cut(s)	59, 113, 173, 242, 306, 494
CviKI_1	RGCY	6 cut(s)	59, 113, 173, 242, 306, 494
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	4 cut(s)	210, 365, 454, 485
DpnII	GATC	4 cut(s)	208, 363, 452, 483
EciI	GGCGGA	1 cut(s)	455
FaeI	CATG	4 cut(s)	35, 239, 254, 419
FaiI	YATR	9 cut(s)	12, 33, 130, 207, 237, 252, 331, 406, 417
FatI	CATG	4 cut(s)	31, 235, 250, 415
Fnu4HI	GCNGC	3 cut(s)	57, 243, 304
FokI	GGATG	3 cut(s)	212, 287, 484
Fsp4HI	GCNGC	3 cut(s)	57, 243, 304
GluI	GCNGC	3 cut(s)	57, 243, 304
GsuI	CTGGAG	1 cut(s)	523
Hin1II	CATG	4 cut(s)	35, 239, 254, 419
HinfI	GANTC	1 cut(s)	290
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	80, 367, 469
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	3 cut(s)	148, 327, 425
HpyCH4V	TGCA	5 cut(s)	35, 50, 250, 303, 322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 158
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	4 cut(s)	35, 239, 254, 419
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	208, 363, 452, 483
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	3 cut(s)	68, 229, 315
LweI	GCATC	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	425, 506
MalI	GATC	4 cut(s)	210, 365, 454, 485
MboI	GATC	4 cut(s)	208, 363, 452, 483
MboII	GAAGA	3 cut(s)	82, 95, 355
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	3 cut(s)	63, 117, 222
MnlI	CCTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 158
NdeII	GATC	4 cut(s)	208, 363, 452, 483
NlaIII	CATG	4 cut(s)	35, 239, 254, 419
NlaIV	GGNNCC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	58, 244, 305
PspN4I	GGNNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	483
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	57, 243, 304
Sau3AI	GATC	4 cut(s)	208, 363, 452, 483
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	2 cut(s)	175, 244
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	301
SfuI	TTCGAA	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	3 cut(s)	63, 117, 222
SsiI	CCGC	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	148, 327, 425
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	63, 117, 222
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	3 cut(s)	56, 242, 303
TspDTI	ATGAA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.