Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008239

Physical Location & Seq

Genomic Coordinates Reverse (-)

28834795 .. 28836949

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1199700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAATGGTACAGTGGTAGGTTGCTCCGTCATGCAGATGATATTCTTGCAAAGGCAGCCAACATTCTGAAGAAATATCAAGAAAACAAGCAAACTAATATTCTATTGGCGGCTAAAATTGGTGGAATATATTGGTGGTACCAGACAGTATCACACCCTGCTGAACTTACAGCTGGATACTACAACACTGCTCTTAGAGATGGTTATGATCCTGTTGCTTCAATTTTGTCTCGTCATGGAGCTGCTTTGCATGTTTCCTGCTTAGAAATGACAGATGGTGATAATCCGGCATCCTATCTTTGCAGCCCAGAAGGATTACTCCAGCAGATATGGACTGTTTCAAAGAAAAGGATACATTTGATCGGGAGAAATACCCATGAACGATTTGACAGGGTTGGTTTATGGCAAATACATGCTAACTGTTACCATTCCCAGGCTGAACCTGTAAGATCATTTACGTATTTCAGAATGAATGATAAGATCTTTAGGGCCGAAAATTGGAATAACTTTGTTCCTTTCGTTAGAAAGATGAGCACAAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

182

Amino Acids

21.02

Weight (kDa)

9.13

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 173	1.1e-33	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55700 AT5G55700
fragaria_vesca	FvH4_3g29220 FvH4_3g29220 FvH4_3g29220 FvH4_3g29220
malus_domestica	MD11G1199700.v1.1 MD11G1199800.v1.1
prunus_persica	Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1
pyrus_communis	pycom11g17260
rosa_chinensis	RchiOBHm_Chr5g0053641 RchiOBHm_Chr5g0053651
rosa_multiflora	Rmu_co8304649.1_g000001 Rmu_sc0032104.1_g000001 Rmu_sc0039621.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026910
rosa_rugosa	Rorug05G0280700
rosa_samantha	Rh5CG388600
rosa_wichuraiana	Rw5G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	11, 140
AfiI	CCNNNNNNNGG	2 cut(s)	433, 498
AgsI	TTSAA	2 cut(s)	222, 342
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	2 cut(s)	173, 242
AluI	AGCT	2 cut(s)	173, 242
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	3 cut(s)	56, 242, 303
Asp718I	GGTACC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	290
BaeI	ACNNNNGTAYC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	68, 229, 315
BccI	CCATC	2 cut(s)	194, 269
BciT130I	CCWGG	1 cut(s)	434
BciVI	GTATCC	2 cut(s)	170, 345
BcoDI	GTCTC	1 cut(s)	234
BfuI	GTATCC	2 cut(s)	170, 345
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	4 cut(s)	57, 111, 243, 304
BlsI	GCNGC	4 cut(s)	58, 112, 244, 305
Bme1390I	CCNGG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 498
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	2 cut(s)	433, 498
BseXI	GCAGC	3 cut(s)	68, 229, 315
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	433, 498
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	4 cut(s)	208, 360, 449, 480
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	491
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	4 cut(s)	208, 360, 449, 480
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	4 cut(s)	14, 148, 337, 422
BstBAI	YACGTR	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	194, 262
BstF5I	GGATG	1 cut(s)	290
BstKTI	GATC	4 cut(s)	211, 363, 452, 483
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	4 cut(s)	208, 360, 449, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	254, 416
BstSCI	CCNGG	1 cut(s)	432
BstSNI	TACGTA	1 cut(s)	459
BstV1I	GCAGC	3 cut(s)	68, 229, 315
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuI	GTATCC	2 cut(s)	170, 345
BsuRI	GGCC	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	290
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	19, 186
Cfr13I	GGNCC	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	10, 139
CviAII	CATG	5 cut(s)	32, 236, 251, 377, 413
CviJI	RGCY	7 cut(s)	59, 113, 173, 242, 306, 437, 491
CviKI_1	RGCY	7 cut(s)	59, 113, 173, 242, 306, 437, 491
CviQI	GTAC	2 cut(s)	10, 139
DdeI	CTNAG	2 cut(s)	194, 262
DpnI	GATC	4 cut(s)	210, 362, 451, 482
DpnII	GATC	4 cut(s)	208, 360, 449, 480
Eco105I	TACGTA	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	432
FaeI	CATG	5 cut(s)	35, 239, 254, 380, 416
FaiI	YATR	9 cut(s)	33, 130, 207, 237, 252, 331, 378, 403, 414
FatI	CATG	5 cut(s)	31, 235, 250, 376, 412
Fnu4HI	GCNGC	4 cut(s)	57, 111, 243, 304
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	4 cut(s)	57, 111, 243, 304
GluI	GCNGC	4 cut(s)	57, 111, 243, 304
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	5 cut(s)	35, 239, 254, 380, 416
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	69, 467
Hpy188III	TCNNGA	2 cut(s)	80, 364
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	4 cut(s)	14, 148, 337, 422
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	4 cut(s)	35, 50, 250, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	194, 262
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	5 cut(s)	35, 239, 254, 380, 416
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	208, 360, 449, 480
LmnI	GCTCC	2 cut(s)	30, 239
Lsp1109I	GCAGC	3 cut(s)	68, 229, 315
LweI	GCATC	1 cut(s)	299
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	210, 362, 451, 482
MboI	GATC	4 cut(s)	208, 360, 449, 480
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	4 cut(s)	117, 222, 496, 538
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	4 cut(s)	208, 360, 449, 480
NlaIII	CATG	5 cut(s)	35, 239, 254, 380, 416
NlaIV	GGNNCC	1 cut(s)	140
NspI	RCATGY	2 cut(s)	254, 416
PkrI	GCNGC	4 cut(s)	58, 112, 244, 305
Ppu21I	YACGTR	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	480
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	11, 140
RsaNI	GTAC	2 cut(s)	10, 139
RseI	CAYNNNNRTG	1 cut(s)	36
SatI	GCNGC	4 cut(s)	57, 111, 243, 304
Sau3AI	GATC	4 cut(s)	208, 360, 449, 480
Sau96I	GGNCC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	536
SetI	ASST	5 cut(s)	23, 175, 244, 445, 461
SfaNI	GCATC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	36
SnaBI	TACGTA	1 cut(s)	459
Sse9I	AATT	4 cut(s)	117, 222, 496, 538
SsiI	CCGC	1 cut(s)	110
SspI	AATATT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	4 cut(s)	14, 148, 337, 422
TaiI	ACGT	1 cut(s)	461
TasI	AATT	4 cut(s)	117, 222, 496, 538
TauI	GCSGC	1 cut(s)	113
TscAI	CASTG	2 cut(s)	19, 193
TseI	GCWGC	3 cut(s)	56, 242, 303
TspDTI	ATGAA	2 cut(s)	393, 485
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	19, 193
XceI	RCATGY	2 cut(s)	254, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.