Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032104.1

Orthogroup ID

OG0008239

Physical Location & Seq

Genomic Coordinates Forward (+)

322 .. 1230

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032104.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggccgcatgtgaggaagggaagcctcaatggggagaagggggaccaccaaatgctggctattacaatagtcttccatctggagctcctttctttgaagagggagaggaaagctttctttctgattatgggtgctttttccttgaatggtatagtggtagtttgcttggtcatgcagatgctattcttgcaaaggcagccaaaattttgaagaagtatcaagaagacaagcaaacttctattctgttagtggctaaaattggtggaatatattggtggtaccagacagtagcacaccctgctgaactcacagctggatactacaacactgctctgagggatggttatgatcctgttgcttcaattttttctcgtcatggagctgctttacatgtgtcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

133

Amino Acids

14.55

Weight (kDa)

5.06

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55700 AT5G55700
fragaria_vesca	FvH4_3g29220 FvH4_3g29220 FvH4_3g29220 FvH4_3g29220
malus_domestica	MD11G1199700.v1.1 MD11G1199800.v1.1
prunus_persica	Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1 Prupe.4G243300_v2.0.a1
pyrus_communis	pycom11g17260
rosa_chinensis	RchiOBHm_Chr5g0053641 RchiOBHm_Chr5g0053651
rosa_multiflora	Rmu_co8304649.1_g000001 Rmu_sc0032104.1_g000001 Rmu_sc0039621.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026910
rosa_rugosa	Rorug05G0280700
rosa_samantha	Rh5CG388600
rosa_wichuraiana	Rw5G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	56
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	204
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	32, 56
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	98, 146, 211, 363
AluBI	AGCT	4 cut(s)	86, 114, 314, 383
AluI	AGCT	4 cut(s)	86, 114, 314, 383
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	197, 383
ApoI	RAATTY	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	65, 231
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	209, 370
BccI	CCATC	2 cut(s)	85, 335
BciVI	GTATCC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	311
BisI	GCNGC	3 cut(s)	6, 198, 384
BlsI	GCNGC	3 cut(s)	7, 199, 385
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	45, 281
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	65, 231
BpmI	CTGGAG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 56
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	32, 56
BseMII	CTCAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	209, 370
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	32, 56
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	45, 281
BspPI	GGATC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	279
BssMI	GATC	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 299
BstNSI	RCATGY	2 cut(s)	12, 395
BstV1I	GCAGC	2 cut(s)	209, 370
BstV2I	GAAGAC	2 cut(s)	65, 231
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	9, 173, 377, 392
CviJI	RGCY	9 cut(s)	5, 25, 60, 86, 114, 200, 254, 314, 383
CviKI_1	RGCY	9 cut(s)	5, 25, 60, 86, 114, 200, 254, 314, 383
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	4 cut(s)	12, 176, 380, 395
FaiI	YATR	8 cut(s)	10, 129, 153, 174, 271, 348, 378, 393
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	8, 172, 376, 391
Fnu4HI	GCNGC	3 cut(s)	6, 198, 384
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	6, 198, 384
GluI	GCNGC	3 cut(s)	6, 198, 384
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	12, 176, 380, 395
HindIII	AAGCTT	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	124, 336
Hpy188III	TCNNGA	2 cut(s)	81, 221
HpyAV	CCTTC	2 cut(s)	11, 32
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	176, 191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 299
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	12, 176, 380, 395
KpnI	GGTACC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	3 cut(s)	83, 91, 380
LpnPI	CCDG	6 cut(s)	42, 66, 296, 300, 312, 366
Lsp1109I	GCAGC	2 cut(s)	209, 370
LweI	GCATC	1 cut(s)	169
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	65, 110, 223, 236
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	3 cut(s)	204, 258, 363
MnlI	CCTC	5 cut(s)	7, 36, 94, 100, 330
MroXI	GAANNNNTTC	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 299
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	4 cut(s)	12, 176, 380, 395
NlaIV	GGNNCC	2 cut(s)	45, 281
NspI	RCATGY	2 cut(s)	12, 395
PciI	ACATGT	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	7, 199, 385
PscI	ACATGT	1 cut(s)	391
Psp124BI	GAGCTC	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	45, 281
PspPI	GGNCC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	88
SatI	GCNGC	3 cut(s)	6, 198, 384
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	4 cut(s)	88, 116, 316, 385
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	3 cut(s)	204, 258, 363
SsiI	CCGC	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	3 cut(s)	204, 258, 363
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	2 cut(s)	197, 383
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	2 cut(s)	12, 395
XmnI	GAANNNNTTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.