FvH4_3g29660

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008252
Physical Location & Seq
Reverse (-)
22682419 .. 22684190
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29660.t2

Sequence Viewer

Length: 522 bp
ATGGCAACGCCAAAACAGTTATGGGAGCAGCAGCAATTGCAGATGCAGCGTGTCAATAAGAACTCCGGCGCCATTGTTAGTTACACCGGTAGTCCGGATGATGACAAGGAAGAAGAGATGTCAAGGTCTGCATTGGCTATTTTTCGTGTCAAGGAGGAAGAGATTGAGAGAAAGAAGTTGGAGGTGAGAGACAAGGTTCAGGCTCAGTTGGGACGAGCTGAAGAAGCAAGTAGGCGCTTAACTGAGATTCGTGAAGAGCTTGAAGCACTGACAGATCCCATGAGAAAGGAAGTTGCAAACATTCGGAAGAGGATAGATTTAGTTAACAGAGATTTAAAGCCGCTGGGACAGAGCTGCCAGAGGAAGGAAAAGGAATACAAGGAAGCAGTCGAGGCTTTGAACGAGAAGAACAGAGAAAAAGCTCAGCTACTTTCCAGATTGATGGAGCTTGTGGGTGAAAGTGAGAGATTGAGGATGAAGAAGCTGGAGGAGCTGAACAAACATGTCGAAACTCTGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

174

Amino Acids

20.36

Weight (kDa)

8.59

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 27 - 85 8.3e-22 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 1 cut(s) 341
AclWI GGATC 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 502
AgeI ACCGGT 1 cut(s) 86
AgsI TTSAA 2 cut(s) 263, 400
AluBI AGCT 8 cut(s) 218, 259, 354, 422, 427, 448, 484, 493
AluI AGCT 8 cut(s) 218, 259, 354, 422, 427, 448, 484, 493
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 94
ApeKI GCWGC 4 cut(s) 28, 31, 46, 354
AsiGI ACCGGT 1 cut(s) 86
AspLEI GCGC 2 cut(s) 71, 237
AsuHPI GGTGA 2 cut(s) 196, 467
BanI GGYRCC 1 cut(s) 68
BbvI GCAGC 4 cut(s) 40, 43, 58, 341
BccI CCATC 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 183
BfoI RGCGCY 2 cut(s) 72, 238
BisI GCNGC 5 cut(s) 29, 32, 47, 341, 355
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 5 cut(s) 30, 33, 48, 342, 356
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 69
BsaWI WCCGGW 2 cut(s) 86, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse118I RCCGGY 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 94
BseGI GGATG 2 cut(s) 103, 480
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 3 cut(s) 218, 234, 437
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 4 cut(s) 40, 43, 58, 341
BseYI CCCAGC 1 cut(s) 343
BshNI GGYRCC 1 cut(s) 68
BshTI ACCGGT 1 cut(s) 86
BsiSI CCGG 3 cut(s) 66, 87, 95
BslFI GGGAC 2 cut(s) 225, 360
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 225, 360
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 1 cut(s) 274
Bsp1720I GCTNAGC 1 cut(s) 423
BspACI CCGC 1 cut(s) 341
BspCNI CTCAG 3 cut(s) 217, 235, 436
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 4 cut(s) 108, 153, 249, 302
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 204, 243, 423
BstF5I GGATG 2 cut(s) 103, 480
BstH2I RGCGCY 2 cut(s) 72, 238
BstHHI GCGC 2 cut(s) 71, 237
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 5 cut(s) 37, 46, 224, 392, 490
BstNSI RCATGY 1 cut(s) 506
BstV1I GCAGC 4 cut(s) 40, 43, 58, 341
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 442
BstYI RGATCY 1 cut(s) 274
BtsCI GGATG 2 cut(s) 103, 480
BtsIMutI CAGTG 1 cut(s) 266
CfoI GCGC 2 cut(s) 71, 237
Cfr10I RCCGGY 1 cut(s) 86
CspAI ACCGGT 1 cut(s) 86
CviAII CATG 2 cut(s) 280, 503
DdeI CTNAG 3 cut(s) 204, 243, 423
DinI GGCGCC 1 cut(s) 70
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraI TTTAAA 1 cut(s) 336
Eam1104I CTCTTC 4 cut(s) 108, 153, 249, 302
EarI CTCTTC 4 cut(s) 108, 153, 249, 302
Eco57I CTGAAG 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
FaeI CATG 2 cut(s) 283, 506
FaiI YATR 3 cut(s) 22, 281, 504
FaqI GGGAC 2 cut(s) 225, 360
FatI CATG 2 cut(s) 279, 502
Fnu4HI GCNGC 5 cut(s) 29, 32, 47, 341, 355
FokI GGATG 2 cut(s) 110, 487
Fsp4HI GCNGC 5 cut(s) 29, 32, 47, 341, 355
GlaI GCGC 2 cut(s) 70, 236
GluI GCNGC 5 cut(s) 29, 32, 47, 341, 355
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 2 cut(s) 72, 238
HapII CCGG 3 cut(s) 66, 87, 95
HhaI GCGC 2 cut(s) 71, 237
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 2 cut(s) 283, 506
Hin6I GCGC 2 cut(s) 69, 235
HinP1I GCGC 2 cut(s) 69, 235
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 1 cut(s) 247
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 3 cut(s) 66, 87, 95
HphI GGTGA 2 cut(s) 196, 467
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 95, 251, 435
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 40, 46, 131, 296
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 46, 224, 392, 490
HpyF3I CTNAG 3 cut(s) 204, 243, 423
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 2 cut(s) 283, 506
HspAI GCGC 2 cut(s) 69, 235
KasI GGCGCC 1 cut(s) 68
Kpn2I TCCGGA 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 1 cut(s) 274
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 3 cut(s) 25, 445, 490
LpnPI CCDG 8 cut(s) 79, 100, 108, 185, 329, 371, 448, 470
Lsp1109I GCAGC 4 cut(s) 40, 43, 58, 341
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 8 cut(s) 122, 125, 170, 233, 266, 319, 418, 490
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 35
Mly113I GGCGCC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 7 cut(s) 148, 175, 303, 354, 385, 465, 481
MroI TCCGGA 1 cut(s) 94
MseI TTAA 4 cut(s) 239, 324, 335, 520
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 3 cut(s) 66, 87, 95
MunI CAATTG 1 cut(s) 35
MwoI GCNNNNNNNGC 5 cut(s) 37, 46, 224, 392, 490
NarI GGCGCC 1 cut(s) 69
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 283, 506
NlaIV GGNNCC 1 cut(s) 70
NspI RCATGY 1 cut(s) 506
PciI ACATGT 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 86
PkrI GCNGC 5 cut(s) 30, 33, 48, 342, 356
PluTI GGCGCC 1 cut(s) 72
PscI ACATGT 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 239, 324, 335, 520
SatI GCNGC 5 cut(s) 29, 32, 47, 341, 355
Sau3AI GATC 1 cut(s) 274
SfaNI GCATC 1 cut(s) 33
SfoI GGCGCC 1 cut(s) 70
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 341
SspDI GGCGCC 1 cut(s) 68
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 390, 507
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 4 cut(s) 239, 324, 335, 520
Tru9I TTAA 4 cut(s) 239, 324, 335, 520
TscAI CASTG 1 cut(s) 273
TseI GCWGC 4 cut(s) 28, 31, 46, 354
TspDTI ATGAA 1 cut(s) 491
TspRI CASTG 1 cut(s) 273
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.