Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008252

Physical Location & Seq

Genomic Coordinates Reverse (-)

11934118 .. 11935553

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGACGCCGAAACAGATGTGGGAGCAGCAGCAATTGCAGGTGCAGCGAGTGAAGAACTCCGGTATCATCAGTTACAATGGGAGTCCAGTAGCTGATGATAAGGAAGAAGAAATGTCAAGGTCTGCATTGGCTTTGTTCCGGGCAAAGGAGGAAGAGATTGAGAGGAAGAAGTCGGAGGTGAAAGACAAGGTTCAGGCTCAGTTGGGACGCGTTGAAGAAGCAACCAAACGTTTGTCTGAGATTCAGGATGAGCTTGAAGCGCTACCAGATCCAATGAGAAAGGAACTTGCAATTATTCGCAAGAGGATAGACGTTGTTCACAAAGAGTTAAAGCCGCTAGGCCAGAGCTGCCAAAGGAAGGAGAAAGAATACAAGGAAGCTCTTGAGGCTTTAAACGAGAAAAGCAGAGAGAAATCTCAACTAGTTTCCAAATTGAAGGAGCTTGTGGGTGAAAGTGAGAAAATGAGGATGAAGAAGCTGGAGGAGCTCAACAAACATCTCGAAACTCTGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

Transcrip_act

Protein Analysis

173

Amino Acids

20.08

Weight (kDa)

8.82

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27740
fragaria_vesca	FvH4_3g29660 FvH4_3g29660 FvH4_3g29660
malus_domestica	MD03G1136300.v1.1 MD11G1158600.v1.1
prunus_persica	Prupe.6G121000_v2.0.a1 Prupe.6G121000_v2.0.a1 Prupe.6G121000_v2.0.a1
pyrus_communis	pycom03g09210 pycom11g12920
rosa_chinensis	RchiOBHm_Chr5g0055021
rosa_laevigata	RLG00000034957
rosa_multiflora	Rmu_co7999198.1_g000001 Rmu_sc0003653.1_g000033 Rmu_sc0031933.1_g000004
rosa_roxburghii	Rroxscaffold_1G00025480
rosa_rugosa	Rorug05G0290100
rosa_samantha	Rh5AG360100 Rh5BG371100 Rh5CG393400 Rh5DG384900
rosa_wichuraiana	Rw5G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	31
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	338
AclI	AACGTT	1 cut(s)	232
AclWI	GGATC	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	8
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	148, 361
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	218, 260, 439
AhlI	ACTAGT	1 cut(s)	424
AluBI	AGCT	7 cut(s)	95, 256, 351, 383, 445, 481, 490
AluI	AGCT	7 cut(s)	95, 256, 351, 383, 445, 481, 490
Alw21I	GWGCWC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	266
AlwNI	CAGNNNCTG	1 cut(s)	95
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	4 cut(s)	28, 31, 46, 351
AspLEI	GCGC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	193, 464
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BanII	GRGCYC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	4 cut(s)	40, 43, 58, 338
BcnI	CCSGG	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	2 cut(s)	341, 425
BfoI	RGCGCY	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	5 cut(s)	29, 32, 47, 338, 352
BlsI	GCNGC	5 cut(s)	30, 33, 48, 339, 353
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 361
Bse1I	ACTGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	256, 477
BseLI	CCNNNNNNNGG	2 cut(s)	148, 361
BseMII	CTCAG	2 cut(s)	215, 231
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	4 cut(s)	40, 43, 58, 338
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	2 cut(s)	63, 142
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	148, 361
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	214, 232
BspFNI	CGCG	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	201, 240
BstF5I	GGATG	2 cut(s)	256, 477
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 46, 262, 351, 389, 487
BstSCI	CCNGG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	4 cut(s)	40, 43, 58, 338
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	256, 477
BveI	ACCTGC	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	265
CseI	GACGC	2 cut(s)	16, 219
DdeI	CTNAG	2 cut(s)	201, 240
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	492
Eco47III	AGCGCT	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	492
FaqI	GGGAC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	29, 32, 47, 338, 352
FokI	GGATG	2 cut(s)	263, 484
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	5 cut(s)	29, 32, 47, 338, 352
FspBI	CTAG	2 cut(s)	341, 425
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	5 cut(s)	29, 32, 47, 338, 352
GsuI	CTGGAG	1 cut(s)	503
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	2 cut(s)	63, 142
HgaI	GACGC	2 cut(s)	16, 219
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	85, 244
HpaII	CCGG	2 cut(s)	63, 142
HphI	GGTGA	2 cut(s)	193, 464
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	178, 241
Hpy188III	TCNNGA	3 cut(s)	248, 386, 503
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	355, 433
HpyCH4IV	ACGT	2 cut(s)	232, 315
HpyCH4V	TGCA	4 cut(s)	40, 46, 128, 293
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 46, 262, 351, 389, 487
HpyF3I	CTNAG	2 cut(s)	201, 240
HpySE526I	ACGT	2 cut(s)	232, 315
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	3 cut(s)	25, 442, 487
LpnPI	CCDG	9 cut(s)	26, 76, 102, 155, 182, 233, 282, 359, 467
Lsp1109I	GCAGC	4 cut(s)	40, 43, 58, 338
MaeI	CTAG	2 cut(s)	341, 425
MaeII	ACGT	2 cut(s)	232, 315
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	7 cut(s)	67, 119, 122, 167, 181, 230, 487
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	3 cut(s)	35, 294, 434
MluI	ACGCGT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	145, 159, 172, 300, 382, 462, 478
MseI	TTAA	3 cut(s)	332, 395, 517
MspI	CCGG	2 cut(s)	63, 142
MspR9I	CCNGG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	6 cut(s)	37, 46, 262, 351, 389, 487
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	5 cut(s)	30, 33, 48, 339, 353
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	332, 395, 517
SatI	GCNGC	5 cut(s)	29, 32, 47, 338, 352
Sau3AI	GATC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	3 cut(s)	35, 294, 434
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	341, 425
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	141
TaiI	ACGT	2 cut(s)	235, 318
TaqI	TCGA	1 cut(s)	504
TasI	AATT	3 cut(s)	35, 294, 434
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	3 cut(s)	332, 395, 517
Tru9I	TTAA	3 cut(s)	332, 395, 517
TseI	GCWGC	4 cut(s)	28, 31, 46, 351
TspDTI	ATGAA	1 cut(s)	488
XspI	CTAG	2 cut(s)	341, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.